RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 NISCHQ9Y2I1 1504 aa34.34■■■■□ 3.09
VRK3-213ENST00000597215 CCDC180Q9P1Z9 1646 aa30.44■■■□□ 2.46
VRK3-213ENST00000597215 ABCC9O60706 1549 aa29.45■■■□□ 2.3
VRK3-213ENST00000597215 ZCCHC6Q5VYS8 1495 aaKnown RBP28.68■■■□□ 2.18
VRK3-213ENST00000597215 DCAF8L2P0C7V8 631 aa28.53■■■□□ 2.16
VRK3-213ENST00000597215 NACADO15069 1562 aa28.53■■■□□ 2.16
VRK3-213ENST00000597215 RB1CC1Q8TDY2 1594 aa28.5■■■□□ 2.15
VRK3-213ENST00000597215 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
VRK3-213ENST00000597215 DCAF1Q9Y4B6 1507 aa28.45■■■□□ 2.15
VRK3-213ENST00000597215 UNC13AQ9UPW8 1703 aa27.84■■■□□ 2.05
VRK3-213ENST00000597215 SCRIBQ14160 1630 aa27.78■■■□□ 2.04
VRK3-213ENST00000597215 BICRAQ9NZM4 1560 aa27.59■■■□□ 2.01
VRK3-213ENST00000597215 PABPN1Q86U42 306 aaKnown RBP eCLIP27.53■■■□□ 2
VRK3-213ENST00000597215 SHROOM4Q9ULL8 1493 aa27.38■■□□□ 1.97
VRK3-213ENST00000597215 EIF4G1Q04637 1599 aaKnown RBP26.85■■□□□ 1.89
VRK3-213ENST00000597215 CECR2Q9BXF3 1484 aa26.69■■□□□ 1.86
VRK3-213ENST00000597215 DNAJC5BQ9UF47 199 aa26.68■■□□□ 1.86
VRK3-213ENST00000597215 CC2D2AQ9P2K1 1620 aa26.66■■□□□ 1.86
VRK3-213ENST00000597215 BAZ1AQ9NRL2 1556 aaPredicted RBP26.62■■□□□ 1.85
VRK3-213ENST00000597215 SMARCA4P51532 1647 aa26.6■■□□□ 1.85
VRK3-213ENST00000597215 MROH2BQ7Z745 1585 aa26.46■■□□□ 1.83
VRK3-213ENST00000597215 SMARCA2P51531 1590 aa26.37■■□□□ 1.81
VRK3-213ENST00000597215 ATAD2BQ9ULI0 1458 aa26.36■■□□□ 1.81
VRK3-213ENST00000597215 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.81
VRK3-213ENST00000597215 NCAPD3P42695 1498 aa26.3■■□□□ 1.8
VRK3-213ENST00000597215 RSF1Q96T23 1441 aaPredicted RBP26.26■■□□□ 1.79
VRK3-213ENST00000597215 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
VRK3-213ENST00000597215 WIZO95785 1651 aa26.2■■□□□ 1.78
VRK3-213ENST00000597215 BAZ1BQ9UIG0 1483 aaKnown RBP26.17■■□□□ 1.78
VRK3-213ENST00000597215 TOP2AP11388 1531 aaKnown RBP25.96■■□□□ 1.75
VRK3-213ENST00000597215 SUPT5HO00267 1087 aaKnown RBP25.81■■□□□ 1.72
VRK3-213ENST00000597215 CCDC88BA6NC98 1476 aa25.62■■□□□ 1.69
VRK3-213ENST00000597215 LAMC3Q9Y6N6 1575 aa25.58■■□□□ 1.69
VRK3-213ENST00000597215 NESP48681 1621 aa25.55■■□□□ 1.68
VRK3-213ENST00000597215 CADPSQ9ULU8 1353 aa25.55■■□□□ 1.68
VRK3-213ENST00000597215 CFTRP13569 1480 aa25.47■■□□□ 1.67
VRK3-213ENST00000597215 PDS5BQ9NTI5 1447 aa25.39■■□□□ 1.66
VRK3-213ENST00000597215 ERCC6Q03468 1493 aa25.39■■□□□ 1.65
VRK3-213ENST00000597215 PRDM2Q13029 1718 aa25.35■■□□□ 1.65
VRK3-213ENST00000597215 KIF21AQ7Z4S6 1674 aa25.3■■□□□ 1.64
VRK3-213ENST00000597215 FANCD2Q9BXW9 1451 aa25.27■■□□□ 1.64
VRK3-213ENST00000597215 CEP164Q9UPV0 1460 aa25.22■■□□□ 1.63
VRK3-213ENST00000597215 THOC2Q8NI27 1593 aaKnown RBP25.14■■□□□ 1.62
VRK3-213ENST00000597215 MRC2Q9UBG0 1479 aa25.11■■□□□ 1.61
VRK3-213ENST00000597215 WDR62O43379 1518 aa25.02■■□□□ 1.6
VRK3-213ENST00000597215 CUX2O14529 1486 aa25.01■■□□□ 1.59
VRK3-213ENST00000597215 URB2Q14146 1524 aaKnown RBP24.98■■□□□ 1.59
VRK3-213ENST00000597215 ABCC8Q09428 1581 aa24.93■■□□□ 1.58
VRK3-213ENST00000597215 DNMBPQ6XZF7 1577 aa24.91■■□□□ 1.58
VRK3-213ENST00000597215 TOPBP1Q92547 1522 aa24.9■■□□□ 1.58
VRK3-213ENST00000597215 CUX1P39880 1505 aa24.81■■□□□ 1.56
VRK3-213ENST00000597215 WRNQ14191 1432 aaPredicted RBP eCLIP24.78■■□□□ 1.56
VRK3-213ENST00000597215 BIVM-ERCC5R4GMW8 1640 aa24.71■■□□□ 1.55
VRK3-213ENST00000597215 POLA1P09884 1462 aaPredicted RBP24.7■■□□□ 1.55
VRK3-213ENST00000597215 TOP2BQ02880 1626 aa24.7■■□□□ 1.54
VRK3-213ENST00000597215 SYNJ1O43426 1573 aa24.69■■□□□ 1.54
VRK3-213ENST00000597215 FGD5Q6ZNL6 1462 aa24.69■■□□□ 1.54
VRK3-213ENST00000597215 IFT140Q96RY7 1462 aa24.68■■□□□ 1.54
VRK3-213ENST00000597215 TARBP1Q13395 1621 aaKnown RBP24.61■■□□□ 1.53
VRK3-213ENST00000597215 SOGA1O94964 1423 aa24.6■■□□□ 1.53
VRK3-213ENST00000597215 RAD54L2Q9Y4B4 1467 aa24.57■■□□□ 1.52
VRK3-213ENST00000597215 ZNF608Q9ULD9 1512 aaPredicted RBP24.51■■□□□ 1.51
VRK3-213ENST00000597215 WDR97A6NE52 1622 aa24.5■■□□□ 1.51
VRK3-213ENST00000597215 ABCA10Q8WWZ4 1543 aa24.47■■□□□ 1.51
VRK3-213ENST00000597215 EIF4G3O43432 1585 aaKnown RBP24.46■■□□□ 1.51
VRK3-213ENST00000597215 TDRD9Q8NDG6 1382 aaKnown RBP24.41■■□□□ 1.5
VRK3-213ENST00000597215 AQRO60306 1485 aaKnown RBP eCLIP24.4■■□□□ 1.5
VRK3-213ENST00000597215 TRIM41Q8WV44 630 aa24.38■■□□□ 1.49
VRK3-213ENST00000597215 ABCA5Q8WWZ7 1642 aa24.35■■□□□ 1.49
VRK3-213ENST00000597215 GAPVD1Q14C86 1478 aa24.33■■□□□ 1.49
VRK3-213ENST00000597215 GRIN2BQ13224 1484 aa24.29■■□□□ 1.48
VRK3-213ENST00000597215 PBRM1Q86U86 1689 aa24.29■■□□□ 1.48
VRK3-213ENST00000597215 CHIC1Q5VXU3 224 aa24.26■■□□□ 1.47
VRK3-213ENST00000597215 KIF27Q86VH2 1401 aa24.24■■□□□ 1.47
VRK3-213ENST00000597215 SNAPC4Q5SXM2 1469 aa24.21■■□□□ 1.47
VRK3-213ENST00000597215 MAGI1Q96QZ7 1491 aaPredicted RBP24.2■■□□□ 1.47
VRK3-213ENST00000597215 ERICH3Q5RHP9 1530 aa24.2■■□□□ 1.46
VRK3-213ENST00000597215 ADAMTS12P58397 1594 aa24.11■■□□□ 1.45
VRK3-213ENST00000597215 SYNJ2O15056 1496 aa24.1■■□□□ 1.45
VRK3-213ENST00000597215 CHD1O14646 1710 aa24.1■■□□□ 1.45
VRK3-213ENST00000597215 IGF1RP08069 1367 aa24.07■■□□□ 1.44
VRK3-213ENST00000597215 RUSC2Q8N2Y8 1516 aa24.07■■□□□ 1.44
VRK3-213ENST00000597215 FHAD1B1AJZ9 1412 aa24.07■■□□□ 1.44
VRK3-213ENST00000597215 CUL7Q14999 1698 aa24.05■■□□□ 1.44
VRK3-213ENST00000597215 FBLN2P98095 1184 aa24.05■■□□□ 1.44
VRK3-213ENST00000597215 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
VRK3-213ENST00000597215 DNAJC5Q9H3Z4 198 aa24.03■■□□□ 1.44
VRK3-213ENST00000597215 EEA1Q15075 1411 aa24■■□□□ 1.43
VRK3-213ENST00000597215 OSCARQ8IYS5 282 aa23.99■■□□□ 1.43
VRK3-213ENST00000597215 GRIN2AQ12879 1464 aa23.98■■□□□ 1.43
VRK3-213ENST00000597215 CARMIL1Q5VZK9 1371 aa23.95■■□□□ 1.42
VRK3-213ENST00000597215 CSRNP3Q8WYN3 585 aa23.87■■□□□ 1.41
VRK3-213ENST00000597215 RAPGEF2Q9Y4G8 1499 aa23.86■■□□□ 1.41
VRK3-213ENST00000597215 NUP160Q12769 1436 aa23.85■■□□□ 1.41
VRK3-213ENST00000597215 CEP170Q5SW79 1584 aa23.84■■□□□ 1.41
VRK3-213ENST00000597215 PRXQ9BXM0 1461 aa23.84■■□□□ 1.41
VRK3-213ENST00000597215 FAM9AQ8IZU1 332 aaPredicted RBP23.84■■□□□ 1.41
VRK3-213ENST00000597215 CLASP1Q7Z460 1538 aa23.83■■□□□ 1.41
VRK3-213ENST00000597215 KIF21BO75037 1637 aa23.72■■□□□ 1.39
VRK3-213ENST00000597215 KIAA0586Q9BVV6 1533 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms