RNA–Protein interactions for RNA: ENST00000597047.1

ZNF548-206, Transcript of zinc finger protein 548, humanhuman

TSL 3

Gene ZNF548, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF548-206ENST00000597047 NISCHQ9Y2I1 1504 aa21.85■■□□□ 1.09
ZNF548-206ENST00000597047 CCDC180Q9P1Z9 1646 aa19.26■□□□□ 0.67
ZNF548-206ENST00000597047 ABCC9O60706 1549 aa18.82■□□□□ 0.6
ZNF548-206ENST00000597047 DCAF8L2P0C7V8 631 aa18.51■□□□□ 0.55
ZNF548-206ENST00000597047 ZCCHC6Q5VYS8 1495 aaKnown RBP18.21■□□□□ 0.51
ZNF548-206ENST00000597047 RB1CC1Q8TDY2 1594 aa18.09■□□□□ 0.49
ZNF548-206ENST00000597047 NACADO15069 1562 aa18.08■□□□□ 0.48
ZNF548-206ENST00000597047 DCAF1Q9Y4B6 1507 aa17.98■□□□□ 0.47
ZNF548-206ENST00000597047 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
ZNF548-206ENST00000597047 SCRIBQ14160 1630 aa17.77■□□□□ 0.44
ZNF548-206ENST00000597047 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
ZNF548-206ENST00000597047 UNC13AQ9UPW8 1703 aa17.71■□□□□ 0.43
ZNF548-206ENST00000597047 SHROOM4Q9ULL8 1493 aa17.68■□□□□ 0.42
ZNF548-206ENST00000597047 BICRAQ9NZM4 1560 aa17.5■□□□□ 0.39
ZNF548-206ENST00000597047 DNAJC5BQ9UF47 199 aa17.49■□□□□ 0.39
ZNF548-206ENST00000597047 CECR2Q9BXF3 1484 aa17.06■□□□□ 0.32
ZNF548-206ENST00000597047 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
ZNF548-206ENST00000597047 CC2D2AQ9P2K1 1620 aa16.96■□□□□ 0.31
ZNF548-206ENST00000597047 BAZ1AQ9NRL2 1556 aaPredicted RBP16.93■□□□□ 0.3
ZNF548-206ENST00000597047 SMARCA4P51532 1647 aa16.92■□□□□ 0.3
ZNF548-206ENST00000597047 MROH2BQ7Z745 1585 aa16.89■□□□□ 0.3
ZNF548-206ENST00000597047 SUPT5HO00267 1087 aaKnown RBP16.78■□□□□ 0.28
ZNF548-206ENST00000597047 WIZO95785 1651 aa16.77■□□□□ 0.28
ZNF548-206ENST00000597047 RSF1Q96T23 1441 aaPredicted RBP16.77■□□□□ 0.27
ZNF548-206ENST00000597047 ATAD2BQ9ULI0 1458 aa16.76■□□□□ 0.27
ZNF548-206ENST00000597047 SMARCA2P51531 1590 aa16.74■□□□□ 0.27
ZNF548-206ENST00000597047 BAZ1BQ9UIG0 1483 aaKnown RBP16.69■□□□□ 0.26
ZNF548-206ENST00000597047 NCAPD3P42695 1498 aa16.67■□□□□ 0.26
ZNF548-206ENST00000597047 PEG3Q9GZU2 1588 aa16.64■□□□□ 0.25
ZNF548-206ENST00000597047 HMGXB3Q12766 1538 aa16.6■□□□□ 0.25
ZNF548-206ENST00000597047 TOP2AP11388 1531 aaKnown RBP16.52■□□□□ 0.24
ZNF548-206ENST00000597047 DNAJC5Q9H3Z4 198 aa16.45■□□□□ 0.22
ZNF548-206ENST00000597047 CCDC88BA6NC98 1476 aa16.38■□□□□ 0.21
ZNF548-206ENST00000597047 NESP48681 1621 aa16.34■□□□□ 0.21
ZNF548-206ENST00000597047 CADPSQ9ULU8 1353 aa16.26■□□□□ 0.19
ZNF548-206ENST00000597047 LAMC3Q9Y6N6 1575 aa16.22■□□□□ 0.19
ZNF548-206ENST00000597047 ERCC6Q03468 1493 aa16.21■□□□□ 0.19
ZNF548-206ENST00000597047 CFTRP13569 1480 aa16.16■□□□□ 0.18
ZNF548-206ENST00000597047 PDS5BQ9NTI5 1447 aa16.16■□□□□ 0.18
ZNF548-206ENST00000597047 KIF21AQ7Z4S6 1674 aa16.13■□□□□ 0.17
ZNF548-206ENST00000597047 FANCD2Q9BXW9 1451 aa16.1■□□□□ 0.17
ZNF548-206ENST00000597047 PRDM2Q13029 1718 aa16.08■□□□□ 0.17
ZNF548-206ENST00000597047 CEP164Q9UPV0 1460 aa16.06■□□□□ 0.16
ZNF548-206ENST00000597047 MRC2Q9UBG0 1479 aa15.97■□□□□ 0.15
ZNF548-206ENST00000597047 THOC2Q8NI27 1593 aaKnown RBP15.93■□□□□ 0.14
ZNF548-206ENST00000597047 ABCC8Q09428 1581 aa15.92■□□□□ 0.14
ZNF548-206ENST00000597047 URB2Q14146 1524 aaKnown RBP15.91■□□□□ 0.14
ZNF548-206ENST00000597047 WDR62O43379 1518 aa15.85■□□□□ 0.13
ZNF548-206ENST00000597047 TOPBP1Q92547 1522 aa15.85■□□□□ 0.13
ZNF548-206ENST00000597047 WRNQ14191 1432 aaPredicted RBP eCLIP15.84■□□□□ 0.13
ZNF548-206ENST00000597047 DNMBPQ6XZF7 1577 aa15.83■□□□□ 0.13
ZNF548-206ENST00000597047 CUX1P39880 1505 aa15.83■□□□□ 0.12
ZNF548-206ENST00000597047 CUX2O14529 1486 aa15.8■□□□□ 0.12
ZNF548-206ENST00000597047 SYNJ1O43426 1573 aa15.78■□□□□ 0.12
ZNF548-206ENST00000597047 TRIM41Q8WV44 630 aa15.77■□□□□ 0.12
ZNF548-206ENST00000597047 FGD5Q6ZNL6 1462 aa15.76■□□□□ 0.11
ZNF548-206ENST00000597047 RAD54L2Q9Y4B4 1467 aa15.74■□□□□ 0.11
ZNF548-206ENST00000597047 POLA1P09884 1462 aaPredicted RBP15.73■□□□□ 0.11
ZNF548-206ENST00000597047 SOGA1O94964 1423 aa15.73■□□□□ 0.11
ZNF548-206ENST00000597047 TOP2BQ02880 1626 aa15.72■□□□□ 0.11
ZNF548-206ENST00000597047 BIVM-ERCC5R4GMW8 1640 aa15.71■□□□□ 0.11
ZNF548-206ENST00000597047 IFT140Q96RY7 1462 aa15.68■□□□□ 0.1
ZNF548-206ENST00000597047 CHIC1Q5VXU3 224 aa15.68■□□□□ 0.1
ZNF548-206ENST00000597047 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
ZNF548-206ENST00000597047 ZNF608Q9ULD9 1512 aaPredicted RBP15.64■□□□□ 0.09
ZNF548-206ENST00000597047 TARBP1Q13395 1621 aaKnown RBP15.63■□□□□ 0.09
ZNF548-206ENST00000597047 AQRO60306 1485 aaKnown RBP eCLIP15.62■□□□□ 0.094e-10■■■■■ 60.8
ZNF548-206ENST00000597047 FAM9AQ8IZU1 332 aaPredicted RBP15.56■□□□□ 0.08
ZNF548-206ENST00000597047 EIF4G3O43432 1585 aaKnown RBP15.55■□□□□ 0.08
ZNF548-206ENST00000597047 ABCA10Q8WWZ4 1543 aa15.54■□□□□ 0.08
ZNF548-206ENST00000597047 FBLN2P98095 1184 aa15.54■□□□□ 0.08
ZNF548-206ENST00000597047 WDR97A6NE52 1622 aa15.54■□□□□ 0.08
ZNF548-206ENST00000597047 GAPVD1Q14C86 1478 aa15.52■□□□□ 0.08
ZNF548-206ENST00000597047 KIF27Q86VH2 1401 aa15.49■□□□□ 0.07
ZNF548-206ENST00000597047 RUSC2Q8N2Y8 1516 aa15.48■□□□□ 0.07
ZNF548-206ENST00000597047 PBRM1Q86U86 1689 aa15.48■□□□□ 0.07
ZNF548-206ENST00000597047 GRIN2BQ13224 1484 aa15.46■□□□□ 0.07
ZNF548-206ENST00000597047 ABCA5Q8WWZ7 1642 aa15.46■□□□□ 0.06
ZNF548-206ENST00000597047 EHMT2Q96KQ7 1210 aa15.45■□□□□ 0.06
ZNF548-206ENST00000597047 SNAPC4Q5SXM2 1469 aa15.45■□□□□ 0.06
ZNF548-206ENST00000597047 CHMP7Q8WUX9 453 aaPredicted RBP15.44■□□□□ 0.06
ZNF548-206ENST00000597047 IGF1RP08069 1367 aa15.38■□□□□ 0.05
ZNF548-206ENST00000597047 ERICH3Q5RHP9 1530 aa15.37■□□□□ 0.05
ZNF548-206ENST00000597047 CHD1O14646 1710 aa15.37■□□□□ 0.05
ZNF548-206ENST00000597047 MAGI1Q96QZ7 1491 aaPredicted RBP15.36■□□□□ 0.05
ZNF548-206ENST00000597047 CSRNP3Q8WYN3 585 aa15.36■□□□□ 0.05
ZNF548-206ENST00000597047 CARMIL1Q5VZK9 1371 aa15.34■□□□□ 0.05
ZNF548-206ENST00000597047 OSCARQ8IYS5 282 aa15.33■□□□□ 0.04
ZNF548-206ENST00000597047 FHAD1B1AJZ9 1412 aa15.33■□□□□ 0.04
ZNF548-206ENST00000597047 ADAMTS12P58397 1594 aa15.32■□□□□ 0.04
ZNF548-206ENST00000597047 SYNJ2O15056 1496 aa15.32■□□□□ 0.04
ZNF548-206ENST00000597047 CUL7Q14999 1698 aa15.29■□□□□ 0.04
ZNF548-206ENST00000597047 EEA1Q15075 1411 aa15.29■□□□□ 0.04
ZNF548-206ENST00000597047 GRIN2AQ12879 1464 aa15.26■□□□□ 0.03
ZNF548-206ENST00000597047 RANGAP1P46060 587 aaPredicted RBP15.24■□□□□ 0.03
ZNF548-206ENST00000597047 RAPGEF2Q9Y4G8 1499 aa15.24■□□□□ 0.03
ZNF548-206ENST00000597047 UBTFP17480 764 aaKnown RBP15.22■□□□□ 0.03
ZNF548-206ENST00000597047 PRXQ9BXM0 1461 aa15.18■□□□□ 0.02
ZNF548-206ENST00000597047 CEP170Q5SW79 1584 aa15.18■□□□□ 0.02
ZNF548-206ENST00000597047 TTBK1Q5TCY1 1321 aaPredicted RBP15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms