RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 NISCHQ9Y2I1 1504 aa20■□□□□ 0.79
VRK3-211ENST00000596445 CCDC180Q9P1Z9 1646 aa17.73■□□□□ 0.43
VRK3-211ENST00000596445 ABCC9O60706 1549 aa17.14■□□□□ 0.33
VRK3-211ENST00000596445 ZCCHC6Q5VYS8 1495 aaKnown RBP16.69■□□□□ 0.26
VRK3-211ENST00000596445 DCAF8L2P0C7V8 631 aa16.62■□□□□ 0.25
VRK3-211ENST00000596445 NACADO15069 1562 aa16.62■□□□□ 0.25
VRK3-211ENST00000596445 RB1CC1Q8TDY2 1594 aa16.59■□□□□ 0.25
VRK3-211ENST00000596445 MYO15BQ96JP2 1530 aa16.58■□□□□ 0.24
VRK3-211ENST00000596445 DCAF1Q9Y4B6 1507 aa16.57■□□□□ 0.24
VRK3-211ENST00000596445 UNC13AQ9UPW8 1703 aa16.24■□□□□ 0.19
VRK3-211ENST00000596445 SCRIBQ14160 1630 aa16.16■□□□□ 0.18
VRK3-211ENST00000596445 BICRAQ9NZM4 1560 aa16.08■□□□□ 0.16
VRK3-211ENST00000596445 PABPN1Q86U42 306 aaKnown RBP eCLIP16.04■□□□□ 0.16
VRK3-211ENST00000596445 SHROOM4Q9ULL8 1493 aa15.94■□□□□ 0.14
VRK3-211ENST00000596445 EIF4G1Q04637 1599 aaKnown RBP15.63■□□□□ 0.09
VRK3-211ENST00000596445 DNAJC5BQ9UF47 199 aa15.57■□□□□ 0.08
VRK3-211ENST00000596445 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
VRK3-211ENST00000596445 CC2D2AQ9P2K1 1620 aa15.54■□□□□ 0.08
VRK3-211ENST00000596445 BAZ1AQ9NRL2 1556 aaPredicted RBP15.49■□□□□ 0.07
VRK3-211ENST00000596445 SMARCA4P51532 1647 aa15.49■□□□□ 0.07
VRK3-211ENST00000596445 MROH2BQ7Z745 1585 aa15.41■□□□□ 0.06
VRK3-211ENST00000596445 SMARCA2P51531 1590 aa15.36■□□□□ 0.05
VRK3-211ENST00000596445 ATAD2BQ9ULI0 1458 aa15.35■□□□□ 0.05
VRK3-211ENST00000596445 PEG3Q9GZU2 1588 aa15.34■□□□□ 0.05
VRK3-211ENST00000596445 NCAPD3P42695 1498 aa15.33■□□□□ 0.04
VRK3-211ENST00000596445 RSF1Q96T23 1441 aaPredicted RBP15.3■□□□□ 0.04
VRK3-211ENST00000596445 HMGXB3Q12766 1538 aa15.27■□□□□ 0.04
VRK3-211ENST00000596445 WIZO95785 1651 aa15.27■□□□□ 0.03
VRK3-211ENST00000596445 BAZ1BQ9UIG0 1483 aaKnown RBP15.24■□□□□ 0.03
VRK3-211ENST00000596445 TOP2AP11388 1531 aaKnown RBP15.11■□□□□ 0.01
VRK3-211ENST00000596445 SUPT5HO00267 1087 aaKnown RBP15.03■□□□□ -0
VRK3-211ENST00000596445 CCDC88BA6NC98 1476 aa14.93□□□□□ -0.02
VRK3-211ENST00000596445 LAMC3Q9Y6N6 1575 aa14.9□□□□□ -0.02
VRK3-211ENST00000596445 NESP48681 1621 aa14.88□□□□□ -0.03
VRK3-211ENST00000596445 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
VRK3-211ENST00000596445 CFTRP13569 1480 aa14.83□□□□□ -0.03
VRK3-211ENST00000596445 PDS5BQ9NTI5 1447 aa14.78□□□□□ -0.04
VRK3-211ENST00000596445 PRDM2Q13029 1718 aa14.78□□□□□ -0.04
VRK3-211ENST00000596445 ERCC6Q03468 1493 aa14.76□□□□□ -0.05
VRK3-211ENST00000596445 KIF21AQ7Z4S6 1674 aa14.74□□□□□ -0.05
VRK3-211ENST00000596445 FANCD2Q9BXW9 1451 aa14.7□□□□□ -0.06
VRK3-211ENST00000596445 CEP164Q9UPV0 1460 aa14.68□□□□□ -0.06
VRK3-211ENST00000596445 THOC2Q8NI27 1593 aaKnown RBP14.64□□□□□ -0.07
VRK3-211ENST00000596445 MRC2Q9UBG0 1479 aa14.62□□□□□ -0.07
VRK3-211ENST00000596445 CUX2O14529 1486 aa14.57□□□□□ -0.08
VRK3-211ENST00000596445 WDR62O43379 1518 aa14.56□□□□□ -0.08
VRK3-211ENST00000596445 URB2Q14146 1524 aaKnown RBP14.55□□□□□ -0.08
VRK3-211ENST00000596445 ABCC8Q09428 1581 aa14.52□□□□□ -0.08
VRK3-211ENST00000596445 DNMBPQ6XZF7 1577 aa14.5□□□□□ -0.09
VRK3-211ENST00000596445 TOPBP1Q92547 1522 aa14.5□□□□□ -0.09
VRK3-211ENST00000596445 CUX1P39880 1505 aa14.45□□□□□ -0.1
VRK3-211ENST00000596445 WRNQ14191 1432 aaPredicted RBP eCLIP14.41□□□□□ -0.1
VRK3-211ENST00000596445 TOP2BQ02880 1626 aa14.39□□□□□ -0.11
VRK3-211ENST00000596445 BIVM-ERCC5R4GMW8 1640 aa14.39□□□□□ -0.11
VRK3-211ENST00000596445 POLA1P09884 1462 aaPredicted RBP14.38□□□□□ -0.11
VRK3-211ENST00000596445 SYNJ1O43426 1573 aa14.38□□□□□ -0.11
VRK3-211ENST00000596445 FGD5Q6ZNL6 1462 aa14.37□□□□□ -0.11
VRK3-211ENST00000596445 IFT140Q96RY7 1462 aa14.36□□□□□ -0.11
VRK3-211ENST00000596445 TARBP1Q13395 1621 aaKnown RBP14.33□□□□□ -0.11
VRK3-211ENST00000596445 SOGA1O94964 1423 aa14.32□□□□□ -0.12
VRK3-211ENST00000596445 RAD54L2Q9Y4B4 1467 aa14.31□□□□□ -0.12
VRK3-211ENST00000596445 ZNF608Q9ULD9 1512 aaPredicted RBP14.27□□□□□ -0.12
VRK3-211ENST00000596445 WDR97A6NE52 1622 aa14.26□□□□□ -0.13
VRK3-211ENST00000596445 ABCA10Q8WWZ4 1543 aa14.25□□□□□ -0.13
VRK3-211ENST00000596445 EIF4G3O43432 1585 aaKnown RBP14.23□□□□□ -0.13
VRK3-211ENST00000596445 AQRO60306 1485 aaKnown RBP eCLIP14.22□□□□□ -0.13
VRK3-211ENST00000596445 TDRD9Q8NDG6 1382 aaKnown RBP14.22□□□□□ -0.13
VRK3-211ENST00000596445 TRIM41Q8WV44 630 aa14.2□□□□□ -0.14
VRK3-211ENST00000596445 ABCA5Q8WWZ7 1642 aa14.19□□□□□ -0.14
VRK3-211ENST00000596445 GAPVD1Q14C86 1478 aa14.17□□□□□ -0.14
VRK3-211ENST00000596445 PBRM1Q86U86 1689 aa14.14□□□□□ -0.15
VRK3-211ENST00000596445 GRIN2BQ13224 1484 aa14.14□□□□□ -0.15
VRK3-211ENST00000596445 CHIC1Q5VXU3 224 aa14.14□□□□□ -0.15
VRK3-211ENST00000596445 KIF27Q86VH2 1401 aa14.11□□□□□ -0.15
VRK3-211ENST00000596445 SNAPC4Q5SXM2 1469 aa14.09□□□□□ -0.15
VRK3-211ENST00000596445 MAGI1Q96QZ7 1491 aaPredicted RBP14.09□□□□□ -0.15
VRK3-211ENST00000596445 ERICH3Q5RHP9 1530 aa14.09□□□□□ -0.15
VRK3-211ENST00000596445 CHD1O14646 1710 aa14.04□□□□□ -0.16
VRK3-211ENST00000596445 IGF1RP08069 1367 aa14.03□□□□□ -0.16
VRK3-211ENST00000596445 SYNJ2O15056 1496 aa14.03□□□□□ -0.16
VRK3-211ENST00000596445 ADAMTS12P58397 1594 aa14.03□□□□□ -0.16
VRK3-211ENST00000596445 RUSC2Q8N2Y8 1516 aa14.02□□□□□ -0.16
VRK3-211ENST00000596445 FHAD1B1AJZ9 1412 aa14.01□□□□□ -0.17
VRK3-211ENST00000596445 FBLN2P98095 1184 aa14.01□□□□□ -0.17
VRK3-211ENST00000596445 CHMP7Q8WUX9 453 aaPredicted RBP14.01□□□□□ -0.17
VRK3-211ENST00000596445 CUL7Q14999 1698 aa14.01□□□□□ -0.17
VRK3-211ENST00000596445 OSCARQ8IYS5 282 aa13.99□□□□□ -0.17
VRK3-211ENST00000596445 EEA1Q15075 1411 aa13.96□□□□□ -0.18
VRK3-211ENST00000596445 GRIN2AQ12879 1464 aa13.95□□□□□ -0.18
VRK3-211ENST00000596445 CARMIL1Q5VZK9 1371 aa13.95□□□□□ -0.18
VRK3-211ENST00000596445 CSRNP3Q8WYN3 585 aa13.91□□□□□ -0.18
VRK3-211ENST00000596445 DNAJC5Q9H3Z4 198 aa13.9□□□□□ -0.18
VRK3-211ENST00000596445 RAPGEF2Q9Y4G8 1499 aa13.89□□□□□ -0.19
VRK3-211ENST00000596445 NUP160Q12769 1436 aa13.89□□□□□ -0.19
VRK3-211ENST00000596445 CEP170Q5SW79 1584 aa13.88□□□□□ -0.19
VRK3-211ENST00000596445 PRXQ9BXM0 1461 aa13.88□□□□□ -0.19
VRK3-211ENST00000596445 FAM9AQ8IZU1 332 aaPredicted RBP13.88□□□□□ -0.19
VRK3-211ENST00000596445 CLASP1Q7Z460 1538 aa13.87□□□□□ -0.19
VRK3-211ENST00000596445 KIF21BO75037 1637 aa13.81□□□□□ -0.2
VRK3-211ENST00000596445 KIAA0586Q9BVV6 1533 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms