RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 NISCHQ9Y2I1 1504 aa25.53■■□□□ 1.68
LIG1-210ENST00000596332 CCDC180Q9P1Z9 1646 aa22.49■■□□□ 1.19
LIG1-210ENST00000596332 ABCC9O60706 1549 aa21.85■■□□□ 1.09
LIG1-210ENST00000596332 ZCCHC6Q5VYS8 1495 aaKnown RBP21.32■■□□□ 1
LIG1-210ENST00000596332 DCAF8L2P0C7V8 631 aa21.15■□□□□ 0.98
LIG1-210ENST00000596332 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.97
LIG1-210ENST00000596332 DCAF1Q9Y4B6 1507 aa21.13■□□□□ 0.97
LIG1-210ENST00000596332 NACADO15069 1562 aa21.12■□□□□ 0.97
LIG1-210ENST00000596332 RB1CC1Q8TDY2 1594 aa21.06■□□□□ 0.96
LIG1-210ENST00000596332 UNC13AQ9UPW8 1703 aa20.63■□□□□ 0.89
LIG1-210ENST00000596332 BICRAQ9NZM4 1560 aa20.57■□□□□ 0.88
LIG1-210ENST00000596332 SCRIBQ14160 1630 aa20.56■□□□□ 0.88
LIG1-210ENST00000596332 PABPN1Q86U42 306 aaKnown RBP eCLIP20.51■□□□□ 0.871e-12■■■■■ 45.6
LIG1-210ENST00000596332 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
LIG1-210ENST00000596332 DNAJC5BQ9UF47 199 aa20.05■□□□□ 0.8
LIG1-210ENST00000596332 CECR2Q9BXF3 1484 aa19.93■□□□□ 0.78
LIG1-210ENST00000596332 EIF4G1Q04637 1599 aaKnown RBP19.91■□□□□ 0.78
LIG1-210ENST00000596332 CC2D2AQ9P2K1 1620 aa19.77■□□□□ 0.76
LIG1-210ENST00000596332 MROH2BQ7Z745 1585 aa19.72■□□□□ 0.75
LIG1-210ENST00000596332 SMARCA4P51532 1647 aa19.72■□□□□ 0.75
LIG1-210ENST00000596332 BAZ1AQ9NRL2 1556 aaPredicted RBP19.7■□□□□ 0.74
LIG1-210ENST00000596332 ATAD2BQ9ULI0 1458 aa19.6■□□□□ 0.73
LIG1-210ENST00000596332 RSF1Q96T23 1441 aaPredicted RBP19.59■□□□□ 0.73
LIG1-210ENST00000596332 NCAPD3P42695 1498 aa19.57■□□□□ 0.72
LIG1-210ENST00000596332 PEG3Q9GZU2 1588 aa19.57■□□□□ 0.72
LIG1-210ENST00000596332 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
LIG1-210ENST00000596332 WIZO95785 1651 aa19.46■□□□□ 0.71
LIG1-210ENST00000596332 HMGXB3Q12766 1538 aa19.42■□□□□ 0.7
LIG1-210ENST00000596332 BAZ1BQ9UIG0 1483 aaKnown RBP19.36■□□□□ 0.69
LIG1-210ENST00000596332 TOP2AP11388 1531 aaKnown RBP19.24■□□□□ 0.67
LIG1-210ENST00000596332 SUPT5HO00267 1087 aaKnown RBP19.17■□□□□ 0.66
LIG1-210ENST00000596332 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
LIG1-210ENST00000596332 NESP48681 1621 aa19.04■□□□□ 0.64
LIG1-210ENST00000596332 CADPSQ9ULU8 1353 aa18.99■□□□□ 0.63
LIG1-210ENST00000596332 CFTRP13569 1480 aa18.94■□□□□ 0.62
LIG1-210ENST00000596332 LAMC3Q9Y6N6 1575 aa18.92■□□□□ 0.62
LIG1-210ENST00000596332 PDS5BQ9NTI5 1447 aa18.78■□□□□ 0.6
LIG1-210ENST00000596332 FANCD2Q9BXW9 1451 aa18.73■□□□□ 0.59
LIG1-210ENST00000596332 KIF21AQ7Z4S6 1674 aa18.73■□□□□ 0.59
LIG1-210ENST00000596332 ERCC6Q03468 1493 aa18.71■□□□□ 0.59
LIG1-210ENST00000596332 PRDM2Q13029 1718 aa18.66■□□□□ 0.58
LIG1-210ENST00000596332 THOC2Q8NI27 1593 aaKnown RBP18.65■□□□□ 0.58
LIG1-210ENST00000596332 CEP164Q9UPV0 1460 aa18.64■□□□□ 0.57
LIG1-210ENST00000596332 URB2Q14146 1524 aaKnown RBP18.59■□□□□ 0.57
LIG1-210ENST00000596332 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
LIG1-210ENST00000596332 WDR62O43379 1518 aa18.55■□□□□ 0.56
LIG1-210ENST00000596332 CHIC1Q5VXU3 224 aa18.55■□□□□ 0.56
LIG1-210ENST00000596332 AEBP2Q6ZN18 517 aaPredicted RBP18.52■□□□□ 0.56
LIG1-210ENST00000596332 CUX2O14529 1486 aa18.5■□□□□ 0.55
LIG1-210ENST00000596332 TOPBP1Q92547 1522 aa18.49■□□□□ 0.55
LIG1-210ENST00000596332 CUX1P39880 1505 aa18.46■□□□□ 0.55
LIG1-210ENST00000596332 DNMBPQ6XZF7 1577 aa18.44■□□□□ 0.54
LIG1-210ENST00000596332 ABCC8Q09428 1581 aa18.42■□□□□ 0.54
LIG1-210ENST00000596332 WRNQ14191 1432 aaPredicted RBP eCLIP18.37■□□□□ 0.53
LIG1-210ENST00000596332 SYNJ1O43426 1573 aa18.35■□□□□ 0.53
LIG1-210ENST00000596332 POLA1P09884 1462 aaPredicted RBP18.35■□□□□ 0.53
LIG1-210ENST00000596332 FGD5Q6ZNL6 1462 aa18.32■□□□□ 0.52
LIG1-210ENST00000596332 TOP2BQ02880 1626 aa18.31■□□□□ 0.52
LIG1-210ENST00000596332 BIVM-ERCC5R4GMW8 1640 aa18.3■□□□□ 0.52
LIG1-210ENST00000596332 RAD54L2Q9Y4B4 1467 aa18.29■□□□□ 0.52
LIG1-210ENST00000596332 TARBP1Q13395 1621 aaKnown RBP18.29■□□□□ 0.52
LIG1-210ENST00000596332 IFT140Q96RY7 1462 aa18.27■□□□□ 0.52
LIG1-210ENST00000596332 SOGA1O94964 1423 aa18.26■□□□□ 0.51
LIG1-210ENST00000596332 ZNF608Q9ULD9 1512 aaPredicted RBP18.25■□□□□ 0.51
LIG1-210ENST00000596332 AQRO60306 1485 aaKnown RBP eCLIP18.17■□□□□ 0.5
LIG1-210ENST00000596332 ABCA10Q8WWZ4 1543 aa18.17■□□□□ 0.5
LIG1-210ENST00000596332 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
LIG1-210ENST00000596332 WDR97A6NE52 1622 aa18.15■□□□□ 0.5
LIG1-210ENST00000596332 EIF4G3O43432 1585 aaKnown RBP18.09■□□□□ 0.49
LIG1-210ENST00000596332 TRIM41Q8WV44 630 aa18.06■□□□□ 0.48
LIG1-210ENST00000596332 ABCA5Q8WWZ7 1642 aa18.05■□□□□ 0.48
LIG1-210ENST00000596332 GAPVD1Q14C86 1478 aa18.03■□□□□ 0.48
LIG1-210ENST00000596332 RUSC2Q8N2Y8 1516 aa18■□□□□ 0.47
LIG1-210ENST00000596332 GRIN2BQ13224 1484 aa17.99■□□□□ 0.47
LIG1-210ENST00000596332 IGF1RP08069 1367 aa17.97■□□□□ 0.47
LIG1-210ENST00000596332 SNAPC4Q5SXM2 1469 aa17.95■□□□□ 0.46
LIG1-210ENST00000596332 KIF27Q86VH2 1401 aa17.93■□□□□ 0.46
LIG1-210ENST00000596332 PBRM1Q86U86 1689 aa17.92■□□□□ 0.46
LIG1-210ENST00000596332 ERICH3Q5RHP9 1530 aa17.92■□□□□ 0.46
LIG1-210ENST00000596332 MAGI1Q96QZ7 1491 aaPredicted RBP17.9■□□□□ 0.46
LIG1-210ENST00000596332 SYNJ2O15056 1496 aa17.85■□□□□ 0.45
LIG1-210ENST00000596332 ADAMTS12P58397 1594 aa17.84■□□□□ 0.45
LIG1-210ENST00000596332 FHAD1B1AJZ9 1412 aa17.84■□□□□ 0.45
LIG1-210ENST00000596332 OSCARQ8IYS5 282 aa17.8■□□□□ 0.44
LIG1-210ENST00000596332 CHMP7Q8WUX9 453 aaPredicted RBP17.8■□□□□ 0.44
LIG1-210ENST00000596332 CHD1O14646 1710 aa17.8■□□□□ 0.44
LIG1-210ENST00000596332 FBLN2P98095 1184 aa17.79■□□□□ 0.44
LIG1-210ENST00000596332 CARMIL1Q5VZK9 1371 aa17.79■□□□□ 0.44
LIG1-210ENST00000596332 GRIN2AQ12879 1464 aa17.77■□□□□ 0.44
LIG1-210ENST00000596332 DNAJC5Q9H3Z4 198 aa17.76■□□□□ 0.43
LIG1-210ENST00000596332 PRXQ9BXM0 1461 aa17.75■□□□□ 0.43
LIG1-210ENST00000596332 CSRNP3Q8WYN3 585 aa17.75■□□□□ 0.43
LIG1-210ENST00000596332 NUP160Q12769 1436 aa17.73■□□□□ 0.43
LIG1-210ENST00000596332 CUL7Q14999 1698 aa17.73■□□□□ 0.43
LIG1-210ENST00000596332 EEA1Q15075 1411 aa17.72■□□□□ 0.43
LIG1-210ENST00000596332 FAM9AQ8IZU1 332 aaPredicted RBP17.71■□□□□ 0.43
LIG1-210ENST00000596332 CEP170Q5SW79 1584 aa17.7■□□□□ 0.42
LIG1-210ENST00000596332 CLASP1Q7Z460 1538 aa17.7■□□□□ 0.42
LIG1-210ENST00000596332 RAPGEF2Q9Y4G8 1499 aa17.68■□□□□ 0.42
LIG1-210ENST00000596332 KIAA0586Q9BVV6 1533 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms