RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 NISCHQ9Y2I1 1504 aa34.45■■■■□ 3.1
LIG1-208ENST00000595758 CCDC180Q9P1Z9 1646 aa30.49■■■□□ 2.47
LIG1-208ENST00000595758 ABCC9O60706 1549 aa29.74■■■□□ 2.35
LIG1-208ENST00000595758 DCAF8L2P0C7V8 631 aa28.82■■■□□ 2.2
LIG1-208ENST00000595758 ZCCHC6Q5VYS8 1495 aaKnown RBP28.71■■■□□ 2.19
LIG1-208ENST00000595758 NACADO15069 1562 aa28.67■■■□□ 2.18
LIG1-208ENST00000595758 RB1CC1Q8TDY2 1594 aa28.66■■■□□ 2.18
LIG1-208ENST00000595758 MYO15BQ96JP2 1530 aa28.54■■■□□ 2.16
LIG1-208ENST00000595758 DCAF1Q9Y4B6 1507 aa28.49■■■□□ 2.15
LIG1-208ENST00000595758 UNC13AQ9UPW8 1703 aa27.94■■■□□ 2.06
LIG1-208ENST00000595758 PABPN1Q86U42 306 aaKnown RBP eCLIP27.88■■■□□ 2.05
LIG1-208ENST00000595758 SCRIBQ14160 1630 aa27.88■■■□□ 2.05
LIG1-208ENST00000595758 BICRAQ9NZM4 1560 aa27.77■■■□□ 2.04
LIG1-208ENST00000595758 SHROOM4Q9ULL8 1493 aa27.5■■□□□ 1.99
LIG1-208ENST00000595758 DNAJC5BQ9UF47 199 aa27.17■■□□□ 1.94
LIG1-208ENST00000595758 EIF4G1Q04637 1599 aaKnown RBP27.03■■□□□ 1.92
LIG1-208ENST00000595758 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
LIG1-208ENST00000595758 CECR2Q9BXF3 1484 aa26.83■■□□□ 1.89
LIG1-208ENST00000595758 BAZ1AQ9NRL2 1556 aaPredicted RBP26.67■■□□□ 1.86
LIG1-208ENST00000595758 SMARCA4P51532 1647 aa26.67■■□□□ 1.86
LIG1-208ENST00000595758 MROH2BQ7Z745 1585 aa26.55■■□□□ 1.84
LIG1-208ENST00000595758 ATAD2BQ9ULI0 1458 aa26.51■■□□□ 1.83
LIG1-208ENST00000595758 SMARCA2P51531 1590 aa26.48■■□□□ 1.83
LIG1-208ENST00000595758 NCAPD3P42695 1498 aa26.48■■□□□ 1.83
LIG1-208ENST00000595758 PEG3Q9GZU2 1588 aa26.39■■□□□ 1.82
LIG1-208ENST00000595758 RSF1Q96T23 1441 aaPredicted RBP26.33■■□□□ 1.81
LIG1-208ENST00000595758 HMGXB3Q12766 1538 aa26.32■■□□□ 1.8
LIG1-208ENST00000595758 BAZ1BQ9UIG0 1483 aaKnown RBP26.3■■□□□ 1.8
LIG1-208ENST00000595758 WIZO95785 1651 aa26.25■■□□□ 1.79
LIG1-208ENST00000595758 TOP2AP11388 1531 aaKnown RBP25.99■■□□□ 1.75
LIG1-208ENST00000595758 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
LIG1-208ENST00000595758 NESP48681 1621 aa25.78■■□□□ 1.72
LIG1-208ENST00000595758 CADPSQ9ULU8 1353 aa25.73■■□□□ 1.71
LIG1-208ENST00000595758 CCDC88BA6NC98 1476 aa25.72■■□□□ 1.71
LIG1-208ENST00000595758 LAMC3Q9Y6N6 1575 aa25.71■■□□□ 1.71
LIG1-208ENST00000595758 ERCC6Q03468 1493 aa25.64■■□□□ 1.69
LIG1-208ENST00000595758 CFTRP13569 1480 aa25.6■■□□□ 1.69
LIG1-208ENST00000595758 PDS5BQ9NTI5 1447 aa25.59■■□□□ 1.69
LIG1-208ENST00000595758 KIF21AQ7Z4S6 1674 aa25.42■■□□□ 1.66
LIG1-208ENST00000595758 FANCD2Q9BXW9 1451 aa25.41■■□□□ 1.66
LIG1-208ENST00000595758 CEP164Q9UPV0 1460 aa25.36■■□□□ 1.65
LIG1-208ENST00000595758 PRDM2Q13029 1718 aa25.32■■□□□ 1.64
LIG1-208ENST00000595758 THOC2Q8NI27 1593 aaKnown RBP25.3■■□□□ 1.64
LIG1-208ENST00000595758 MRC2Q9UBG0 1479 aa25.29■■□□□ 1.64
LIG1-208ENST00000595758 CUX2O14529 1486 aa25.27■■□□□ 1.64
LIG1-208ENST00000595758 WDR62O43379 1518 aa25.17■■□□□ 1.62
LIG1-208ENST00000595758 URB2Q14146 1524 aaKnown RBP25.14■■□□□ 1.62
LIG1-208ENST00000595758 ABCC8Q09428 1581 aa25.05■■□□□ 1.6
LIG1-208ENST00000595758 TOPBP1Q92547 1522 aa25.02■■□□□ 1.6
LIG1-208ENST00000595758 DNMBPQ6XZF7 1577 aa24.99■■□□□ 1.59
LIG1-208ENST00000595758 CUX1P39880 1505 aa24.9■■□□□ 1.58
LIG1-208ENST00000595758 IFT140Q96RY7 1462 aa24.83■■□□□ 1.57
LIG1-208ENST00000595758 WRNQ14191 1432 aaPredicted RBP eCLIP24.83■■□□□ 1.57
LIG1-208ENST00000595758 POLA1P09884 1462 aaPredicted RBP24.82■■□□□ 1.56
LIG1-208ENST00000595758 FGD5Q6ZNL6 1462 aa24.79■■□□□ 1.56
LIG1-208ENST00000595758 SOGA1O94964 1423 aa24.76■■□□□ 1.55
LIG1-208ENST00000595758 RAD54L2Q9Y4B4 1467 aa24.73■■□□□ 1.55
LIG1-208ENST00000595758 TOP2BQ02880 1626 aa24.72■■□□□ 1.55
LIG1-208ENST00000595758 SYNJ1O43426 1573 aa24.71■■□□□ 1.55
LIG1-208ENST00000595758 TARBP1Q13395 1621 aaKnown RBP24.71■■□□□ 1.55
LIG1-208ENST00000595758 ZNF608Q9ULD9 1512 aaPredicted RBP24.71■■□□□ 1.55
LIG1-208ENST00000595758 BIVM-ERCC5R4GMW8 1640 aa24.68■■□□□ 1.54
LIG1-208ENST00000595758 TDRD9Q8NDG6 1382 aaKnown RBP24.61■■□□□ 1.53
LIG1-208ENST00000595758 AQRO60306 1485 aaKnown RBP eCLIP24.61■■□□□ 1.532e-12■■■■■ 52
LIG1-208ENST00000595758 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
LIG1-208ENST00000595758 ABCA10Q8WWZ4 1543 aa24.56■■□□□ 1.52
LIG1-208ENST00000595758 WDR97A6NE52 1622 aa24.51■■□□□ 1.51
LIG1-208ENST00000595758 GAPVD1Q14C86 1478 aa24.46■■□□□ 1.51
LIG1-208ENST00000595758 GRIN2BQ13224 1484 aa24.43■■□□□ 1.5
LIG1-208ENST00000595758 TRIM41Q8WV44 630 aa24.42■■□□□ 1.5
LIG1-208ENST00000595758 ABCA5Q8WWZ7 1642 aa24.41■■□□□ 1.5
LIG1-208ENST00000595758 SNAPC4Q5SXM2 1469 aa24.36■■□□□ 1.49
LIG1-208ENST00000595758 DNAJC5Q9H3Z4 198 aa24.35■■□□□ 1.49
LIG1-208ENST00000595758 MAGI1Q96QZ7 1491 aaPredicted RBP24.33■■□□□ 1.49
LIG1-208ENST00000595758 FBLN2P98095 1184 aa24.33■■□□□ 1.49
LIG1-208ENST00000595758 OSCARQ8IYS5 282 aa24.33■■□□□ 1.49
LIG1-208ENST00000595758 PBRM1Q86U86 1689 aa24.32■■□□□ 1.48
LIG1-208ENST00000595758 KIF27Q86VH2 1401 aa24.31■■□□□ 1.48
LIG1-208ENST00000595758 CHMP7Q8WUX9 453 aaPredicted RBP24.28■■□□□ 1.48
LIG1-208ENST00000595758 ERICH3Q5RHP9 1530 aa24.25■■□□□ 1.47
LIG1-208ENST00000595758 SYNJ2O15056 1496 aa24.24■■□□□ 1.47
LIG1-208ENST00000595758 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
LIG1-208ENST00000595758 CHD1O14646 1710 aa24.21■■□□□ 1.47
LIG1-208ENST00000595758 IGF1RP08069 1367 aa24.2■■□□□ 1.46
LIG1-208ENST00000595758 FHAD1B1AJZ9 1412 aa24.18■■□□□ 1.46
LIG1-208ENST00000595758 ADAMTS12P58397 1594 aa24.17■■□□□ 1.46
LIG1-208ENST00000595758 RUSC2Q8N2Y8 1516 aa24.12■■□□□ 1.45
LIG1-208ENST00000595758 GRIN2AQ12879 1464 aa24.1■■□□□ 1.45
LIG1-208ENST00000595758 CARMIL1Q5VZK9 1371 aa24.06■■□□□ 1.44
LIG1-208ENST00000595758 CUL7Q14999 1698 aa24.05■■□□□ 1.44
LIG1-208ENST00000595758 NUP160Q12769 1436 aa23.99■■□□□ 1.43
LIG1-208ENST00000595758 CLASP1Q7Z460 1538 aa23.98■■□□□ 1.43
LIG1-208ENST00000595758 CEP170Q5SW79 1584 aa23.95■■□□□ 1.43
LIG1-208ENST00000595758 EEA1Q15075 1411 aa23.94■■□□□ 1.42
LIG1-208ENST00000595758 CSRNP3Q8WYN3 585 aa23.94■■□□□ 1.42
LIG1-208ENST00000595758 FAM9AQ8IZU1 332 aaPredicted RBP23.92■■□□□ 1.42
LIG1-208ENST00000595758 RAPGEF2Q9Y4G8 1499 aa23.91■■□□□ 1.42
LIG1-208ENST00000595758 ARHGEF11O15085 1522 aa23.86■■□□□ 1.41
LIG1-208ENST00000595758 PRXQ9BXM0 1461 aa23.86■■□□□ 1.41
LIG1-208ENST00000595758 RIMBP3CA6NJZ7 1639 aa23.83■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 6.3 ms