RNA–Protein interactions for RNA: ENST00000592158.1

SMARCA4-218, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 409 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-218ENST00000592158 NISCHQ9Y2I1 1504 aa23.73■■□□□ 1.39
SMARCA4-218ENST00000592158 ABCC9O60706 1549 aa23.51■■□□□ 1.35
SMARCA4-218ENST00000592158 DNAJC5BQ9UF47 199 aa23.45■■□□□ 1.34
SMARCA4-218ENST00000592158 DNAJC5Q9H3Z4 198 aa22.64■■□□□ 1.21
SMARCA4-218ENST00000592158 CCDC180Q9P1Z9 1646 aa21.94■■□□□ 1.1
SMARCA4-218ENST00000592158 PABPN1Q86U42 306 aaKnown RBP eCLIP21.67■■□□□ 1.06
SMARCA4-218ENST00000592158 RB1CC1Q8TDY2 1594 aa21.65■■□□□ 1.06
SMARCA4-218ENST00000592158 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
SMARCA4-218ENST00000592158 UNC13AQ9UPW8 1703 aa21.2■□□□□ 0.98
SMARCA4-218ENST00000592158 CC2D2AQ9P2K1 1620 aa21.14■□□□□ 0.97
SMARCA4-218ENST00000592158 NACADO15069 1562 aa21.12■□□□□ 0.97
SMARCA4-218ENST00000592158 BICRAQ9NZM4 1560 aa21.1■□□□□ 0.97
SMARCA4-218ENST00000592158 TRIM41Q8WV44 630 aa21.05■□□□□ 0.96
SMARCA4-218ENST00000592158 CUX2O14529 1486 aa20.85■□□□□ 0.93
SMARCA4-218ENST00000592158 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
SMARCA4-218ENST00000592158 EIF4G1Q04637 1599 aaKnown RBP20.7■□□□□ 0.9
SMARCA4-218ENST00000592158 SHROOM4Q9ULL8 1493 aa20.58■□□□□ 0.89
SMARCA4-218ENST00000592158 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
SMARCA4-218ENST00000592158 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
SMARCA4-218ENST00000592158 AEBP2Q6ZN18 517 aaPredicted RBP20.22■□□□□ 0.83
SMARCA4-218ENST00000592158 SCRIBQ14160 1630 aa19.99■□□□□ 0.79
SMARCA4-218ENST00000592158 THOC2Q8NI27 1593 aaKnown RBP19.83■□□□□ 0.77
SMARCA4-218ENST00000592158 NESP48681 1621 aa19.76■□□□□ 0.75
SMARCA4-218ENST00000592158 ILDR1Q86SU0 546 aaPredicted RBP19.68■□□□□ 0.74
SMARCA4-218ENST00000592158 OSCARQ8IYS5 282 aa19.68■□□□□ 0.74
SMARCA4-218ENST00000592158 TRHP20396 242 aaPredicted RBP19.65■□□□□ 0.74
SMARCA4-218ENST00000592158 BAZ1AQ9NRL2 1556 aaPredicted RBP19.63■□□□□ 0.73
SMARCA4-218ENST00000592158 RIMBP3CA6NJZ7 1639 aa19.59■□□□□ 0.73
SMARCA4-218ENST00000592158 RIMBP3BA6NNM3 1639 aa19.59■□□□□ 0.73
SMARCA4-218ENST00000592158 RIMBP3Q9UFD9 1639 aa19.59■□□□□ 0.73
SMARCA4-218ENST00000592158 SMARCA2P51531 1590 aa19.58■□□□□ 0.73
SMARCA4-218ENST00000592158 NCAPD3P42695 1498 aa19.53■□□□□ 0.72
SMARCA4-218ENST00000592158 DCAF1Q9Y4B6 1507 aa19.47■□□□□ 0.71
SMARCA4-218ENST00000592158 KIF21AQ7Z4S6 1674 aa19.44■□□□□ 0.7
SMARCA4-218ENST00000592158 ARHGEF11O15085 1522 aa19.35■□□□□ 0.69
SMARCA4-218ENST00000592158 CYB5RLQ6IPT4 315 aa19.35■□□□□ 0.69
SMARCA4-218ENST00000592158 LAMC3Q9Y6N6 1575 aa19.33■□□□□ 0.69
SMARCA4-218ENST00000592158 ZCCHC6Q5VYS8 1495 aaKnown RBP19.32■□□□□ 0.68
SMARCA4-218ENST00000592158 PDS5BQ9NTI5 1447 aa19.28■□□□□ 0.68
SMARCA4-218ENST00000592158 ATAD2BQ9ULI0 1458 aa19.26■□□□□ 0.67
SMARCA4-218ENST00000592158 HMGXB3Q12766 1538 aa19.22■□□□□ 0.67
SMARCA4-218ENST00000592158 MRC2Q9UBG0 1479 aa19.2■□□□□ 0.66
SMARCA4-218ENST00000592158 WDR62O43379 1518 aa19.2■□□□□ 0.66
SMARCA4-218ENST00000592158 ARAP1Q96P48 1450 aa19.07■□□□□ 0.64
SMARCA4-218ENST00000592158 BAZ1BQ9UIG0 1483 aaKnown RBP18.98■□□□□ 0.63
SMARCA4-218ENST00000592158 CADPSQ9ULU8 1353 aa18.87■□□□□ 0.61
SMARCA4-218ENST00000592158 SMARCA4P51532 1647 aa18.85■□□□□ 0.61
SMARCA4-218ENST00000592158 CEP164Q9UPV0 1460 aa18.82■□□□□ 0.6
SMARCA4-218ENST00000592158 RSF1Q96T23 1441 aaPredicted RBP18.73■□□□□ 0.59
SMARCA4-218ENST00000592158 FANCD2Q9BXW9 1451 aa18.66■□□□□ 0.58
SMARCA4-218ENST00000592158 KDM4FA0A1W2PPD8 638 aa18.66■□□□□ 0.58
SMARCA4-218ENST00000592158 ZNF608Q9ULD9 1512 aaPredicted RBP18.65■□□□□ 0.58
SMARCA4-218ENST00000592158 PEG3Q9GZU2 1588 aa18.64■□□□□ 0.58
SMARCA4-218ENST00000592158 CHD1O14646 1710 aa18.63■□□□□ 0.57
SMARCA4-218ENST00000592158 URB2Q14146 1524 aaKnown RBP18.61■□□□□ 0.57
SMARCA4-218ENST00000592158 FBXO41Q8TF61 875 aa18.57■□□□□ 0.56
SMARCA4-218ENST00000592158 LMTK3Q96Q04 1460 aa18.57■□□□□ 0.56
SMARCA4-218ENST00000592158 FBLN2P98095 1184 aa18.51■□□□□ 0.55
SMARCA4-218ENST00000592158 IFT140Q96RY7 1462 aa18.5■□□□□ 0.55
SMARCA4-218ENST00000592158 ERCC6L2Q5T890 1561 aa18.5■□□□□ 0.55
SMARCA4-218ENST00000592158 SOCS7O14512 581 aa18.49■□□□□ 0.55
SMARCA4-218ENST00000592158 EIF4G3O43432 1585 aaKnown RBP18.45■□□□□ 0.54
SMARCA4-218ENST00000592158 HECW2Q9P2P5 1572 aa18.37■□□□□ 0.53
SMARCA4-218ENST00000592158 ILDR2Q71H61 639 aa18.35■□□□□ 0.53
SMARCA4-218ENST00000592158 CLASP1Q7Z460 1538 aa18.34■□□□□ 0.53
SMARCA4-218ENST00000592158 CFTRP13569 1480 aa18.32■□□□□ 0.52
SMARCA4-218ENST00000592158 KIF13AQ9H1H9 1805 aa18.31■□□□□ 0.52
SMARCA4-218ENST00000592158 GAPVD1Q14C86 1478 aa18.3■□□□□ 0.52
SMARCA4-218ENST00000592158 AQRO60306 1485 aaKnown RBP eCLIP18.29■□□□□ 0.525e-11■■■□□ 17.9
SMARCA4-218ENST00000592158 MROH2BQ7Z745 1585 aa18.29■□□□□ 0.52
SMARCA4-218ENST00000592158 SYNJ1O43426 1573 aa18.2■□□□□ 0.5
SMARCA4-218ENST00000592158 SYNJ2O15056 1496 aa18.16■□□□□ 0.5
SMARCA4-218ENST00000592158 DISP3Q9P2K9 1392 aa18.15■□□□□ 0.5
SMARCA4-218ENST00000592158 TOPBP1Q92547 1522 aa18.14■□□□□ 0.49
SMARCA4-218ENST00000592158 KDM6BO15054 1643 aa18.13■□□□□ 0.49
SMARCA4-218ENST00000592158 ADGRL1O94910 1474 aa18.12■□□□□ 0.49
SMARCA4-218ENST00000592158 CHMP7Q8WUX9 453 aaPredicted RBP18.1■□□□□ 0.49
SMARCA4-218ENST00000592158 TARBP1Q13395 1621 aaKnown RBP18.09■□□□□ 0.49
SMARCA4-218ENST00000592158 FAM69CQ0P6D2 419 aa18.05■□□□□ 0.48
SMARCA4-218ENST00000592158 SNAPC4Q5SXM2 1469 aa18.05■□□□□ 0.48
SMARCA4-218ENST00000592158 PRDM2Q13029 1718 aa18.01■□□□□ 0.47
SMARCA4-218ENST00000592158 WIZO95785 1651 aa18■□□□□ 0.47
SMARCA4-218ENST00000592158 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
SMARCA4-218ENST00000592158 ABCC10Q5T3U5 1492 aa17.96■□□□□ 0.47
SMARCA4-218ENST00000592158 TDRD9Q8NDG6 1382 aaKnown RBP17.93■□□□□ 0.46
SMARCA4-218ENST00000592158 DNMBPQ6XZF7 1577 aa17.92■□□□□ 0.46
SMARCA4-218ENST00000592158 MAGI1Q96QZ7 1491 aaPredicted RBP17.91■□□□□ 0.46
SMARCA4-218ENST00000592158 TSPOAP1O95153 1857 aa17.89■□□□□ 0.45
SMARCA4-218ENST00000592158 DIP2BQ9P265 1576 aa17.87■□□□□ 0.45
SMARCA4-218ENST00000592158 POLA1P09884 1462 aaPredicted RBP17.85■□□□□ 0.45
SMARCA4-218ENST00000592158 RAD54L2Q9Y4B4 1467 aa17.84■□□□□ 0.45
SMARCA4-218ENST00000592158 SPATA31D1Q6ZQQ2 1576 aa17.79■□□□□ 0.44
SMARCA4-218ENST00000592158 CEP170Q5SW79 1584 aa17.77■□□□□ 0.44
SMARCA4-218ENST00000592158 WDR97A6NE52 1622 aa17.76■□□□□ 0.43
SMARCA4-218ENST00000592158 GRIN2BQ13224 1484 aa17.75■□□□□ 0.43
SMARCA4-218ENST00000592158 SOGA1O94964 1423 aa17.75■□□□□ 0.43
SMARCA4-218ENST00000592158 MAPKBP1O60336 1514 aa17.75■□□□□ 0.43
SMARCA4-218ENST00000592158 NPM1P06748 294 aaKnown RBP eCLIP17.73■□□□□ 0.43
SMARCA4-218ENST00000592158 TOP2BQ02880 1626 aa17.65■□□□□ 0.42
SMARCA4-218ENST00000592158 CERKQ8TCT0 537 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms