RNA–Protein interactions for RNA: ENST00000590556.1

DDX39A-214, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 575 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-214ENST00000590556 NISCHQ9Y2I1 1504 aa45.69■■■■■ 4.9
DDX39A-214ENST00000590556 CCDC180Q9P1Z9 1646 aa40.43■■■■■ 4.06
DDX39A-214ENST00000590556 ABCC9O60706 1549 aa39.21■■■■□ 3.87
DDX39A-214ENST00000590556 ZCCHC6Q5VYS8 1495 aaKnown RBP38.13■■■■□ 3.69
DDX39A-214ENST00000590556 DCAF8L2P0C7V8 631 aa38.1■■■■□ 3.69
DDX39A-214ENST00000590556 NACADO15069 1562 aa37.93■■■■□ 3.66
DDX39A-214ENST00000590556 RB1CC1Q8TDY2 1594 aa37.89■■■■□ 3.66
DDX39A-214ENST00000590556 MYO15BQ96JP2 1530 aa37.81■■■■□ 3.64
DDX39A-214ENST00000590556 DCAF1Q9Y4B6 1507 aa37.81■■■■□ 3.64
DDX39A-214ENST00000590556 UNC13AQ9UPW8 1703 aa37.02■■■■□ 3.52
DDX39A-214ENST00000590556 SCRIBQ14160 1630 aa36.96■■■■□ 3.51
DDX39A-214ENST00000590556 PABPN1Q86U42 306 aaKnown RBP eCLIP36.75■■■■□ 3.47
DDX39A-214ENST00000590556 BICRAQ9NZM4 1560 aa36.7■■■■□ 3.47
DDX39A-214ENST00000590556 SHROOM4Q9ULL8 1493 aa36.38■■■■□ 3.41
DDX39A-214ENST00000590556 EIF4G1Q04637 1599 aaKnown RBP35.71■■■■□ 3.31
DDX39A-214ENST00000590556 DNAJC5BQ9UF47 199 aa35.63■■■■□ 3.29
DDX39A-214ENST00000590556 CECR2Q9BXF3 1484 aa35.55■■■■□ 3.28
DDX39A-214ENST00000590556 CC2D2AQ9P2K1 1620 aa35.47■■■■□ 3.27
DDX39A-214ENST00000590556 BAZ1AQ9NRL2 1556 aaPredicted RBP35.38■■■■□ 3.25
DDX39A-214ENST00000590556 SMARCA4P51532 1647 aa35.37■■■■□ 3.25
DDX39A-214ENST00000590556 MROH2BQ7Z745 1585 aa35.22■■■■□ 3.23
DDX39A-214ENST00000590556 ATAD2BQ9ULI0 1458 aa35.07■■■■□ 3.2
DDX39A-214ENST00000590556 SMARCA2P51531 1590 aa35.06■■■■□ 3.2
DDX39A-214ENST00000590556 NCAPD3P42695 1498 aa34.99■■■■□ 3.19
DDX39A-214ENST00000590556 PEG3Q9GZU2 1588 aa34.99■■■■□ 3.19
DDX39A-214ENST00000590556 RSF1Q96T23 1441 aaPredicted RBP34.97■■■■□ 3.19
DDX39A-214ENST00000590556 WIZO95785 1651 aa34.87■■■■□ 3.17
DDX39A-214ENST00000590556 HMGXB3Q12766 1538 aa34.85■■■■□ 3.17
DDX39A-214ENST00000590556 BAZ1BQ9UIG0 1483 aaKnown RBP34.83■■■■□ 3.17
DDX39A-214ENST00000590556 TOP2AP11388 1531 aaKnown RBP34.51■■■■□ 3.12
DDX39A-214ENST00000590556 SUPT5HO00267 1087 aaKnown RBP34.45■■■■□ 3.11
DDX39A-214ENST00000590556 CCDC88BA6NC98 1476 aa34.13■■■■□ 3.05
DDX39A-214ENST00000590556 NESP48681 1621 aa34.04■■■■□ 3.04
DDX39A-214ENST00000590556 CADPSQ9ULU8 1353 aa34.01■■■■□ 3.04
DDX39A-214ENST00000590556 LAMC3Q9Y6N6 1575 aa34.01■■■■□ 3.03
DDX39A-214ENST00000590556 CFTRP13569 1480 aa33.88■■■■□ 3.01
DDX39A-214ENST00000590556 PDS5BQ9NTI5 1447 aa33.79■■■■□ 3
DDX39A-214ENST00000590556 ERCC6Q03468 1493 aa33.78■■■■□ 3
DDX39A-214ENST00000590556 PRDM2Q13029 1718 aa33.65■■■□□ 2.98
DDX39A-214ENST00000590556 KIF21AQ7Z4S6 1674 aa33.65■■■□□ 2.98
DDX39A-214ENST00000590556 FANCD2Q9BXW9 1451 aa33.62■■■□□ 2.97
DDX39A-214ENST00000590556 CEP164Q9UPV0 1460 aa33.54■■■□□ 2.96
DDX39A-214ENST00000590556 MRC2Q9UBG0 1479 aa33.41■■■□□ 2.94
DDX39A-214ENST00000590556 THOC2Q8NI27 1593 aaKnown RBP33.41■■■□□ 2.94
DDX39A-214ENST00000590556 WDR62O43379 1518 aa33.27■■■□□ 2.92
DDX39A-214ENST00000590556 URB2Q14146 1524 aaKnown RBP33.25■■■□□ 2.91
DDX39A-214ENST00000590556 CUX2O14529 1486 aa33.25■■■□□ 2.91
DDX39A-214ENST00000590556 ABCC8Q09428 1581 aa33.15■■■□□ 2.9
DDX39A-214ENST00000590556 TOPBP1Q92547 1522 aa33.12■■■□□ 2.89
DDX39A-214ENST00000590556 DNMBPQ6XZF7 1577 aa33.12■■■□□ 2.89
DDX39A-214ENST00000590556 CUX1P39880 1505 aa33.02■■■□□ 2.88
DDX39A-214ENST00000590556 WRNQ14191 1432 aaPredicted RBP eCLIP32.97■■■□□ 2.872e-9■■■■■ 39.4
DDX39A-214ENST00000590556 POLA1P09884 1462 aaPredicted RBP32.86■■■□□ 2.85
DDX39A-214ENST00000590556 SYNJ1O43426 1573 aa32.86■■■□□ 2.85
DDX39A-214ENST00000590556 FGD5Q6ZNL6 1462 aa32.86■■■□□ 2.85
DDX39A-214ENST00000590556 TOP2BQ02880 1626 aa32.84■■■□□ 2.85
DDX39A-214ENST00000590556 BIVM-ERCC5R4GMW8 1640 aa32.83■■■□□ 2.85
DDX39A-214ENST00000590556 IFT140Q96RY7 1462 aa32.82■■■□□ 2.84
DDX39A-214ENST00000590556 SOGA1O94964 1423 aa32.77■■■□□ 2.84
DDX39A-214ENST00000590556 RAD54L2Q9Y4B4 1467 aa32.74■■■□□ 2.83
DDX39A-214ENST00000590556 TARBP1Q13395 1621 aaKnown RBP32.72■■■□□ 2.83
DDX39A-214ENST00000590556 ZNF608Q9ULD9 1512 aaPredicted RBP32.63■■■□□ 2.81
DDX39A-214ENST00000590556 ABCA10Q8WWZ4 1543 aa32.54■■■□□ 2.8
DDX39A-214ENST00000590556 WDR97A6NE52 1622 aa32.53■■■□□ 2.8
DDX39A-214ENST00000590556 TDRD9Q8NDG6 1382 aaKnown RBP32.53■■■□□ 2.8
DDX39A-214ENST00000590556 AQRO60306 1485 aaKnown RBP eCLIP32.52■■■□□ 2.81e-37■■■■■ 42
DDX39A-214ENST00000590556 EIF4G3O43432 1585 aaKnown RBP32.51■■■□□ 2.79
DDX39A-214ENST00000590556 TRIM41Q8WV44 630 aa32.51■■■□□ 2.79
DDX39A-214ENST00000590556 GAPVD1Q14C86 1478 aa32.39■■■□□ 2.78
DDX39A-214ENST00000590556 ABCA5Q8WWZ7 1642 aa32.37■■■□□ 2.77
DDX39A-214ENST00000590556 CHIC1Q5VXU3 224 aa32.36■■■□□ 2.77
DDX39A-214ENST00000590556 GRIN2BQ13224 1484 aa32.32■■■□□ 2.76
DDX39A-214ENST00000590556 PBRM1Q86U86 1689 aa32.27■■■□□ 2.76
DDX39A-214ENST00000590556 KIF27Q86VH2 1401 aa32.26■■■□□ 2.76
DDX39A-214ENST00000590556 SNAPC4Q5SXM2 1469 aa32.22■■■□□ 2.75
DDX39A-214ENST00000590556 MAGI1Q96QZ7 1491 aaPredicted RBP32.19■■■□□ 2.74
DDX39A-214ENST00000590556 ERICH3Q5RHP9 1530 aa32.16■■■□□ 2.74
DDX39A-214ENST00000590556 FBLN2P98095 1184 aa32.1■■■□□ 2.73
DDX39A-214ENST00000590556 RUSC2Q8N2Y8 1516 aa32.08■■■□□ 2.73
DDX39A-214ENST00000590556 IGF1RP08069 1367 aa32.07■■■□□ 2.73
DDX39A-214ENST00000590556 SYNJ2O15056 1496 aa32.06■■■□□ 2.72
DDX39A-214ENST00000590556 CHMP7Q8WUX9 453 aaPredicted RBP32.06■■■□□ 2.72
DDX39A-214ENST00000590556 CHD1O14646 1710 aa32.05■■■□□ 2.72
DDX39A-214ENST00000590556 ADAMTS12P58397 1594 aa32.03■■■□□ 2.72
DDX39A-214ENST00000590556 FHAD1B1AJZ9 1412 aa32.02■■■□□ 2.72
DDX39A-214ENST00000590556 OSCARQ8IYS5 282 aa32■■■□□ 2.71
DDX39A-214ENST00000590556 CUL7Q14999 1698 aa31.95■■■□□ 2.71
DDX39A-214ENST00000590556 CARMIL1Q5VZK9 1371 aa31.91■■■□□ 2.7
DDX39A-214ENST00000590556 EEA1Q15075 1411 aa31.9■■■□□ 2.7
DDX39A-214ENST00000590556 GRIN2AQ12879 1464 aa31.9■■■□□ 2.7
DDX39A-214ENST00000590556 FAM9AQ8IZU1 332 aaPredicted RBP31.85■■■□□ 2.69
DDX39A-214ENST00000590556 CSRNP3Q8WYN3 585 aa31.84■■■□□ 2.69
DDX39A-214ENST00000590556 DNAJC5Q9H3Z4 198 aa31.79■■■□□ 2.68
DDX39A-214ENST00000590556 RAPGEF2Q9Y4G8 1499 aa31.75■■■□□ 2.67
DDX39A-214ENST00000590556 NUP160Q12769 1436 aa31.73■■■□□ 2.67
DDX39A-214ENST00000590556 CEP170Q5SW79 1584 aa31.72■■■□□ 2.67
DDX39A-214ENST00000590556 PRXQ9BXM0 1461 aa31.72■■■□□ 2.67
DDX39A-214ENST00000590556 CLASP1Q7Z460 1538 aa31.69■■■□□ 2.66
DDX39A-214ENST00000590556 KIAA0586Q9BVV6 1533 aa31.54■■■□□ 2.64
DDX39A-214ENST00000590556 KIF21BO75037 1637 aa31.53■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms