RNA–Protein interactions for RNA: ENST00000588812.5

CDK3-204, Transcript of cyclin dependent kinase 3, humanhuman

TSL 3

Gene CDK3, Length 570 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3-204ENST00000588812 NISCHQ9Y2I1 1504 aa26.42■■□□□ 1.82
CDK3-204ENST00000588812 CCDC180Q9P1Z9 1646 aa23.36■■□□□ 1.33
CDK3-204ENST00000588812 ABCC9O60706 1549 aa22.6■■□□□ 1.21
CDK3-204ENST00000588812 ZCCHC6Q5VYS8 1495 aaKnown RBP22.06■■□□□ 1.12
CDK3-204ENST00000588812 DCAF8L2P0C7V8 631 aa22■■□□□ 1.11
CDK3-204ENST00000588812 NACADO15069 1562 aa21.92■■□□□ 1.1
CDK3-204ENST00000588812 MYO15BQ96JP2 1530 aa21.9■■□□□ 1.1
CDK3-204ENST00000588812 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
CDK3-204ENST00000588812 RB1CC1Q8TDY2 1594 aa21.88■■□□□ 1.09
CDK3-204ENST00000588812 SCRIBQ14160 1630 aa21.32■■□□□ 1
CDK3-204ENST00000588812 UNC13AQ9UPW8 1703 aa21.32■■□□□ 1
CDK3-204ENST00000588812 PABPN1Q86U42 306 aaKnown RBP eCLIP21.18■□□□□ 0.98
CDK3-204ENST00000588812 BICRAQ9NZM4 1560 aa21.17■□□□□ 0.98
CDK3-204ENST00000588812 DNAJC5BQ9UF47 199 aa21.07■□□□□ 0.96
CDK3-204ENST00000588812 SHROOM4Q9ULL8 1493 aa21.03■□□□□ 0.96
CDK3-204ENST00000588812 EIF4G1Q04637 1599 aaKnown RBP20.6■□□□□ 0.89
CDK3-204ENST00000588812 CECR2Q9BXF3 1484 aa20.54■□□□□ 0.88
CDK3-204ENST00000588812 BAZ1AQ9NRL2 1556 aaPredicted RBP20.47■□□□□ 0.87
CDK3-204ENST00000588812 CC2D2AQ9P2K1 1620 aa20.45■□□□□ 0.86
CDK3-204ENST00000588812 SMARCA4P51532 1647 aa20.43■□□□□ 0.86
CDK3-204ENST00000588812 MROH2BQ7Z745 1585 aa20.35■□□□□ 0.85
CDK3-204ENST00000588812 SMARCA2P51531 1590 aa20.27■□□□□ 0.84
CDK3-204ENST00000588812 ATAD2BQ9ULI0 1458 aa20.27■□□□□ 0.84
CDK3-204ENST00000588812 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
CDK3-204ENST00000588812 PEG3Q9GZU2 1588 aa20.24■□□□□ 0.83
CDK3-204ENST00000588812 NCAPD3P42695 1498 aa20.24■□□□□ 0.83
CDK3-204ENST00000588812 HMGXB3Q12766 1538 aa20.14■□□□□ 0.81
CDK3-204ENST00000588812 WIZO95785 1651 aa20.13■□□□□ 0.81
CDK3-204ENST00000588812 BAZ1BQ9UIG0 1483 aaKnown RBP20.12■□□□□ 0.81
CDK3-204ENST00000588812 TOP2AP11388 1531 aaKnown RBP19.96■□□□□ 0.79
CDK3-204ENST00000588812 SUPT5HO00267 1087 aaKnown RBP19.94■□□□□ 0.78
CDK3-204ENST00000588812 CCDC88BA6NC98 1476 aa19.73■□□□□ 0.75
CDK3-204ENST00000588812 CADPSQ9ULU8 1353 aa19.67■□□□□ 0.74
CDK3-204ENST00000588812 LAMC3Q9Y6N6 1575 aa19.65■□□□□ 0.74
CDK3-204ENST00000588812 NESP48681 1621 aa19.62■□□□□ 0.73
CDK3-204ENST00000588812 CFTRP13569 1480 aa19.59■□□□□ 0.73
CDK3-204ENST00000588812 PDS5BQ9NTI5 1447 aa19.53■□□□□ 0.72
CDK3-204ENST00000588812 ERCC6Q03468 1493 aa19.48■□□□□ 0.71
CDK3-204ENST00000588812 FANCD2Q9BXW9 1451 aa19.42■□□□□ 0.7
CDK3-204ENST00000588812 PRDM2Q13029 1718 aa19.42■□□□□ 0.7
CDK3-204ENST00000588812 CUX2O14529 1486 aa19.4■□□□□ 0.7
CDK3-204ENST00000588812 KIF21AQ7Z4S6 1674 aa19.38■□□□□ 0.69
CDK3-204ENST00000588812 CEP164Q9UPV0 1460 aa19.37■□□□□ 0.69
CDK3-204ENST00000588812 THOC2Q8NI27 1593 aaKnown RBP19.29■□□□□ 0.68
CDK3-204ENST00000588812 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
CDK3-204ENST00000588812 WDR62O43379 1518 aa19.2■□□□□ 0.66
CDK3-204ENST00000588812 URB2Q14146 1524 aaKnown RBP19.2■□□□□ 0.66
CDK3-204ENST00000588812 ABCC8Q09428 1581 aa19.19■□□□□ 0.66
CDK3-204ENST00000588812 DNMBPQ6XZF7 1577 aa19.14■□□□□ 0.65
CDK3-204ENST00000588812 TOPBP1Q92547 1522 aa19.13■□□□□ 0.65
CDK3-204ENST00000588812 DNAJC5Q9H3Z4 198 aa19.1■□□□□ 0.65
CDK3-204ENST00000588812 WRNQ14191 1432 aaPredicted RBP eCLIP19.08■□□□□ 0.65
CDK3-204ENST00000588812 CUX1P39880 1505 aa19.08■□□□□ 0.64
CDK3-204ENST00000588812 TOP2BQ02880 1626 aa19■□□□□ 0.63
CDK3-204ENST00000588812 POLA1P09884 1462 aaPredicted RBP18.99■□□□□ 0.63
CDK3-204ENST00000588812 SYNJ1O43426 1573 aa18.98■□□□□ 0.63
CDK3-204ENST00000588812 FGD5Q6ZNL6 1462 aa18.98■□□□□ 0.63
CDK3-204ENST00000588812 BIVM-ERCC5R4GMW8 1640 aa18.98■□□□□ 0.63
CDK3-204ENST00000588812 IFT140Q96RY7 1462 aa18.97■□□□□ 0.63
CDK3-204ENST00000588812 SOGA1O94964 1423 aa18.94■□□□□ 0.62
CDK3-204ENST00000588812 RAD54L2Q9Y4B4 1467 aa18.9■□□□□ 0.62
CDK3-204ENST00000588812 TARBP1Q13395 1621 aaKnown RBP18.89■□□□□ 0.62
CDK3-204ENST00000588812 TRIM41Q8WV44 630 aa18.85■□□□□ 0.61
CDK3-204ENST00000588812 ZNF608Q9ULD9 1512 aaPredicted RBP18.83■□□□□ 0.6
CDK3-204ENST00000588812 ABCA10Q8WWZ4 1543 aa18.82■□□□□ 0.6
CDK3-204ENST00000588812 TDRD9Q8NDG6 1382 aaKnown RBP18.79■□□□□ 0.6
CDK3-204ENST00000588812 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
CDK3-204ENST00000588812 AQRO60306 1485 aaKnown RBP eCLIP18.77■□□□□ 0.65e-8■■■□□ 17.4
CDK3-204ENST00000588812 CHIC1Q5VXU3 224 aa18.77■□□□□ 0.6
CDK3-204ENST00000588812 EIF4G3O43432 1585 aaKnown RBP18.76■□□□□ 0.59
CDK3-204ENST00000588812 GAPVD1Q14C86 1478 aa18.72■□□□□ 0.59
CDK3-204ENST00000588812 ABCA5Q8WWZ7 1642 aa18.7■□□□□ 0.58
CDK3-204ENST00000588812 KIF27Q86VH2 1401 aa18.68■□□□□ 0.58
CDK3-204ENST00000588812 GRIN2BQ13224 1484 aa18.68■□□□□ 0.58
CDK3-204ENST00000588812 PBRM1Q86U86 1689 aa18.61■□□□□ 0.57
CDK3-204ENST00000588812 ERICH3Q5RHP9 1530 aa18.61■□□□□ 0.57
CDK3-204ENST00000588812 MAGI1Q96QZ7 1491 aaPredicted RBP18.61■□□□□ 0.57
CDK3-204ENST00000588812 SNAPC4Q5SXM2 1469 aa18.59■□□□□ 0.57
CDK3-204ENST00000588812 IGF1RP08069 1367 aa18.56■□□□□ 0.56
CDK3-204ENST00000588812 RUSC2Q8N2Y8 1516 aa18.54■□□□□ 0.56
CDK3-204ENST00000588812 FBLN2P98095 1184 aa18.53■□□□□ 0.56
CDK3-204ENST00000588812 CHMP7Q8WUX9 453 aaPredicted RBP18.53■□□□□ 0.56
CDK3-204ENST00000588812 SYNJ2O15056 1496 aa18.52■□□□□ 0.56
CDK3-204ENST00000588812 FHAD1B1AJZ9 1412 aa18.52■□□□□ 0.56
CDK3-204ENST00000588812 EEA1Q15075 1411 aa18.51■□□□□ 0.55
CDK3-204ENST00000588812 ADAMTS12P58397 1594 aa18.5■□□□□ 0.55
CDK3-204ENST00000588812 OSCARQ8IYS5 282 aa18.49■□□□□ 0.55
CDK3-204ENST00000588812 CUL7Q14999 1698 aa18.48■□□□□ 0.55
CDK3-204ENST00000588812 CARMIL1Q5VZK9 1371 aa18.46■□□□□ 0.55
CDK3-204ENST00000588812 CSRNP3Q8WYN3 585 aa18.45■□□□□ 0.54
CDK3-204ENST00000588812 CHD1O14646 1710 aa18.45■□□□□ 0.54
CDK3-204ENST00000588812 GRIN2AQ12879 1464 aa18.43■□□□□ 0.54
CDK3-204ENST00000588812 FAM9AQ8IZU1 332 aaPredicted RBP18.42■□□□□ 0.54
CDK3-204ENST00000588812 RAPGEF2Q9Y4G8 1499 aa18.38■□□□□ 0.53
CDK3-204ENST00000588812 PRXQ9BXM0 1461 aa18.37■□□□□ 0.53
CDK3-204ENST00000588812 NUP160Q12769 1436 aa18.34■□□□□ 0.53
CDK3-204ENST00000588812 CEP170Q5SW79 1584 aa18.3■□□□□ 0.52
CDK3-204ENST00000588812 CLASP1Q7Z460 1538 aa18.28■□□□□ 0.52
CDK3-204ENST00000588812 ARHGEF11O15085 1522 aa18.26■□□□□ 0.51
CDK3-204ENST00000588812 RIMBP3CA6NJZ7 1639 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms