RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 NISCHQ9Y2I1 1504 aa25.53■■□□□ 1.68
SMARCA4-213ENST00000587988 CCDC180Q9P1Z9 1646 aa22.53■■□□□ 1.2
SMARCA4-213ENST00000587988 ABCC9O60706 1549 aa21.84■■□□□ 1.09
SMARCA4-213ENST00000587988 ZCCHC6Q5VYS8 1495 aaKnown RBP21.32■■□□□ 1
SMARCA4-213ENST00000587988 DCAF8L2P0C7V8 631 aa21.26■□□□□ 0.99
SMARCA4-213ENST00000587988 NACADO15069 1562 aa21.12■□□□□ 0.97
SMARCA4-213ENST00000587988 DCAF1Q9Y4B6 1507 aa21.09■□□□□ 0.97
SMARCA4-213ENST00000587988 RB1CC1Q8TDY2 1594 aa21.07■□□□□ 0.96
SMARCA4-213ENST00000587988 MYO15BQ96JP2 1530 aa21.06■□□□□ 0.96
SMARCA4-213ENST00000587988 UNC13AQ9UPW8 1703 aa20.66■□□□□ 0.9
SMARCA4-213ENST00000587988 SCRIBQ14160 1630 aa20.64■□□□□ 0.89
SMARCA4-213ENST00000587988 PABPN1Q86U42 306 aaKnown RBP eCLIP20.49■□□□□ 0.87
SMARCA4-213ENST00000587988 BICRAQ9NZM4 1560 aa20.48■□□□□ 0.87
SMARCA4-213ENST00000587988 SHROOM4Q9ULL8 1493 aa20.41■□□□□ 0.86
SMARCA4-213ENST00000587988 CECR2Q9BXF3 1484 aa19.9■□□□□ 0.78
SMARCA4-213ENST00000587988 EIF4G1Q04637 1599 aaKnown RBP19.89■□□□□ 0.77
SMARCA4-213ENST00000587988 DNAJC5BQ9UF47 199 aa19.84■□□□□ 0.77
SMARCA4-213ENST00000587988 CC2D2AQ9P2K1 1620 aa19.76■□□□□ 0.75
SMARCA4-213ENST00000587988 SMARCA4P51532 1647 aa19.75■□□□□ 0.75
SMARCA4-213ENST00000587988 BAZ1AQ9NRL2 1556 aaPredicted RBP19.74■□□□□ 0.75
SMARCA4-213ENST00000587988 MROH2BQ7Z745 1585 aa19.7■□□□□ 0.74
SMARCA4-213ENST00000587988 ATAD2BQ9ULI0 1458 aa19.58■□□□□ 0.72
SMARCA4-213ENST00000587988 RSF1Q96T23 1441 aaPredicted RBP19.58■□□□□ 0.72
SMARCA4-213ENST00000587988 SMARCA2P51531 1590 aa19.53■□□□□ 0.72
SMARCA4-213ENST00000587988 PEG3Q9GZU2 1588 aa19.53■□□□□ 0.72
SMARCA4-213ENST00000587988 WIZO95785 1651 aa19.52■□□□□ 0.71
SMARCA4-213ENST00000587988 NCAPD3P42695 1498 aa19.5■□□□□ 0.71
SMARCA4-213ENST00000587988 HMGXB3Q12766 1538 aa19.41■□□□□ 0.7
SMARCA4-213ENST00000587988 BAZ1BQ9UIG0 1483 aaKnown RBP19.41■□□□□ 0.7
SMARCA4-213ENST00000587988 SUPT5HO00267 1087 aaKnown RBP19.33■□□□□ 0.68
SMARCA4-213ENST00000587988 TOP2AP11388 1531 aaKnown RBP19.28■□□□□ 0.68
SMARCA4-213ENST00000587988 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
SMARCA4-213ENST00000587988 NESP48681 1621 aa19■□□□□ 0.63
SMARCA4-213ENST00000587988 CADPSQ9ULU8 1353 aa18.96■□□□□ 0.63
SMARCA4-213ENST00000587988 LAMC3Q9Y6N6 1575 aa18.93■□□□□ 0.62
SMARCA4-213ENST00000587988 CFTRP13569 1480 aa18.9■□□□□ 0.62
SMARCA4-213ENST00000587988 PDS5BQ9NTI5 1447 aa18.79■□□□□ 0.6
SMARCA4-213ENST00000587988 PRDM2Q13029 1718 aa18.77■□□□□ 0.59
SMARCA4-213ENST00000587988 KIF21AQ7Z4S6 1674 aa18.76■□□□□ 0.59
SMARCA4-213ENST00000587988 ERCC6Q03468 1493 aa18.76■□□□□ 0.59
SMARCA4-213ENST00000587988 FANCD2Q9BXW9 1451 aa18.74■□□□□ 0.59
SMARCA4-213ENST00000587988 CEP164Q9UPV0 1460 aa18.68■□□□□ 0.58
SMARCA4-213ENST00000587988 THOC2Q8NI27 1593 aaKnown RBP18.62■□□□□ 0.57
SMARCA4-213ENST00000587988 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
SMARCA4-213ENST00000587988 URB2Q14146 1524 aaKnown RBP18.55■□□□□ 0.56
SMARCA4-213ENST00000587988 WDR62O43379 1518 aa18.53■□□□□ 0.56
SMARCA4-213ENST00000587988 ABCC8Q09428 1581 aa18.49■□□□□ 0.55
SMARCA4-213ENST00000587988 TOPBP1Q92547 1522 aa18.49■□□□□ 0.55
SMARCA4-213ENST00000587988 DNMBPQ6XZF7 1577 aa18.47■□□□□ 0.55
SMARCA4-213ENST00000587988 CUX1P39880 1505 aa18.46■□□□□ 0.55
SMARCA4-213ENST00000587988 CUX2O14529 1486 aa18.44■□□□□ 0.54
SMARCA4-213ENST00000587988 WRNQ14191 1432 aaPredicted RBP eCLIP18.43■□□□□ 0.54
SMARCA4-213ENST00000587988 SYNJ1O43426 1573 aa18.39■□□□□ 0.53
SMARCA4-213ENST00000587988 TOP2BQ02880 1626 aa18.35■□□□□ 0.53
SMARCA4-213ENST00000587988 BIVM-ERCC5R4GMW8 1640 aa18.35■□□□□ 0.53
SMARCA4-213ENST00000587988 POLA1P09884 1462 aaPredicted RBP18.35■□□□□ 0.53
SMARCA4-213ENST00000587988 FGD5Q6ZNL6 1462 aa18.34■□□□□ 0.53
SMARCA4-213ENST00000587988 RAD54L2Q9Y4B4 1467 aa18.29■□□□□ 0.52
SMARCA4-213ENST00000587988 SOGA1O94964 1423 aa18.28■□□□□ 0.52
SMARCA4-213ENST00000587988 IFT140Q96RY7 1462 aa18.26■□□□□ 0.51
SMARCA4-213ENST00000587988 TARBP1Q13395 1621 aaKnown RBP18.26■□□□□ 0.51
SMARCA4-213ENST00000587988 ZNF608Q9ULD9 1512 aaPredicted RBP18.22■□□□□ 0.51
SMARCA4-213ENST00000587988 CHIC1Q5VXU3 224 aa18.21■□□□□ 0.51
SMARCA4-213ENST00000587988 TRIM41Q8WV44 630 aa18.21■□□□□ 0.51
SMARCA4-213ENST00000587988 WDR97A6NE52 1622 aa18.17■□□□□ 0.5
SMARCA4-213ENST00000587988 ABCA10Q8WWZ4 1543 aa18.17■□□□□ 0.5
SMARCA4-213ENST00000587988 TDRD9Q8NDG6 1382 aaKnown RBP18.16■□□□□ 0.5
SMARCA4-213ENST00000587988 AQRO60306 1485 aaKnown RBP eCLIP18.15■□□□□ 0.53e-8■■■■□ 26.1
SMARCA4-213ENST00000587988 EIF4G3O43432 1585 aaKnown RBP18.12■□□□□ 0.49
SMARCA4-213ENST00000587988 ABCA5Q8WWZ7 1642 aa18.07■□□□□ 0.48
SMARCA4-213ENST00000587988 GAPVD1Q14C86 1478 aa18.07■□□□□ 0.48
SMARCA4-213ENST00000587988 RUSC2Q8N2Y8 1516 aa18.02■□□□□ 0.47
SMARCA4-213ENST00000587988 PBRM1Q86U86 1689 aa18.01■□□□□ 0.47
SMARCA4-213ENST00000587988 GRIN2BQ13224 1484 aa18.01■□□□□ 0.47
SMARCA4-213ENST00000587988 KIF27Q86VH2 1401 aa18■□□□□ 0.47
SMARCA4-213ENST00000587988 SNAPC4Q5SXM2 1469 aa17.96■□□□□ 0.47
SMARCA4-213ENST00000587988 IGF1RP08069 1367 aa17.94■□□□□ 0.46
SMARCA4-213ENST00000587988 ERICH3Q5RHP9 1530 aa17.94■□□□□ 0.46
SMARCA4-213ENST00000587988 MAGI1Q96QZ7 1491 aaPredicted RBP17.91■□□□□ 0.46
SMARCA4-213ENST00000587988 ADAMTS12P58397 1594 aa17.87■□□□□ 0.45
SMARCA4-213ENST00000587988 FBLN2P98095 1184 aa17.87■□□□□ 0.45
SMARCA4-213ENST00000587988 FAM9AQ8IZU1 332 aaPredicted RBP17.87■□□□□ 0.45
SMARCA4-213ENST00000587988 SYNJ2O15056 1496 aa17.86■□□□□ 0.45
SMARCA4-213ENST00000587988 FHAD1B1AJZ9 1412 aa17.85■□□□□ 0.45
SMARCA4-213ENST00000587988 CHD1O14646 1710 aa17.85■□□□□ 0.45
SMARCA4-213ENST00000587988 CHMP7Q8WUX9 453 aaPredicted RBP17.84■□□□□ 0.45
SMARCA4-213ENST00000587988 CARMIL1Q5VZK9 1371 aa17.83■□□□□ 0.45
SMARCA4-213ENST00000587988 EEA1Q15075 1411 aa17.82■□□□□ 0.44
SMARCA4-213ENST00000587988 CSRNP3Q8WYN3 585 aa17.82■□□□□ 0.44
SMARCA4-213ENST00000587988 CUL7Q14999 1698 aa17.82■□□□□ 0.44
SMARCA4-213ENST00000587988 GRIN2AQ12879 1464 aa17.78■□□□□ 0.44
SMARCA4-213ENST00000587988 OSCARQ8IYS5 282 aa17.76■□□□□ 0.43
SMARCA4-213ENST00000587988 PRXQ9BXM0 1461 aa17.75■□□□□ 0.43
SMARCA4-213ENST00000587988 RAPGEF2Q9Y4G8 1499 aa17.74■□□□□ 0.43
SMARCA4-213ENST00000587988 CEP170Q5SW79 1584 aa17.7■□□□□ 0.42
SMARCA4-213ENST00000587988 NUP160Q12769 1436 aa17.7■□□□□ 0.42
SMARCA4-213ENST00000587988 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
SMARCA4-213ENST00000587988 CLASP1Q7Z460 1538 aa17.65■□□□□ 0.42
SMARCA4-213ENST00000587988 KIF21BO75037 1637 aa17.65■□□□□ 0.42
SMARCA4-213ENST00000587988 KIAA0586Q9BVV6 1533 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms