RNA–Protein interactions for RNA: ENST00000586558.5

DDX39A-204, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 1,127 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-204ENST00000586558 NISCHQ9Y2I1 1504 aa45.89■■■■■ 4.94
DDX39A-204ENST00000586558 CCDC180Q9P1Z9 1646 aa40.66■■■■■ 4.1
DDX39A-204ENST00000586558 ABCC9O60706 1549 aa39.35■■■■□ 3.89
DDX39A-204ENST00000586558 ZCCHC6Q5VYS8 1495 aaKnown RBP38.33■■■■□ 3.73
DDX39A-204ENST00000586558 NACADO15069 1562 aa38.14■■■■□ 3.7
DDX39A-204ENST00000586558 MYO15BQ96JP2 1530 aa38.09■■■■□ 3.69
DDX39A-204ENST00000586558 DCAF8L2P0C7V8 631 aa38.09■■■■□ 3.69
DDX39A-204ENST00000586558 RB1CC1Q8TDY2 1594 aa38.09■■■■□ 3.69
DDX39A-204ENST00000586558 DCAF1Q9Y4B6 1507 aa38.05■■■■□ 3.68
DDX39A-204ENST00000586558 UNC13AQ9UPW8 1703 aa37.1■■■■□ 3.53
DDX39A-204ENST00000586558 SCRIBQ14160 1630 aa37.06■■■■□ 3.52
DDX39A-204ENST00000586558 BICRAQ9NZM4 1560 aa36.87■■■■□ 3.49
DDX39A-204ENST00000586558 PABPN1Q86U42 306 aaKnown RBP eCLIP36.79■■■■□ 3.48
DDX39A-204ENST00000586558 SHROOM4Q9ULL8 1493 aa36.66■■■■□ 3.46
DDX39A-204ENST00000586558 EIF4G1Q04637 1599 aaKnown RBP35.88■■■■□ 3.33
DDX39A-204ENST00000586558 DNAJC5BQ9UF47 199 aa35.71■■■■□ 3.31
DDX39A-204ENST00000586558 CECR2Q9BXF3 1484 aa35.66■■■■□ 3.3
DDX39A-204ENST00000586558 CC2D2AQ9P2K1 1620 aa35.61■■■■□ 3.29
DDX39A-204ENST00000586558 BAZ1AQ9NRL2 1556 aaPredicted RBP35.57■■■■□ 3.28
DDX39A-204ENST00000586558 SMARCA4P51532 1647 aa35.52■■■■□ 3.28
DDX39A-204ENST00000586558 MROH2BQ7Z745 1585 aa35.34■■■■□ 3.25
DDX39A-204ENST00000586558 SMARCA2P51531 1590 aa35.25■■■■□ 3.23
DDX39A-204ENST00000586558 ATAD2BQ9ULI0 1458 aa35.23■■■■□ 3.23
DDX39A-204ENST00000586558 PEG3Q9GZU2 1588 aa35.21■■■■□ 3.23
DDX39A-204ENST00000586558 NCAPD3P42695 1498 aa35.19■■■■□ 3.22
DDX39A-204ENST00000586558 RSF1Q96T23 1441 aaPredicted RBP35.09■■■■□ 3.21
DDX39A-204ENST00000586558 HMGXB3Q12766 1538 aa35.06■■■■□ 3.2
DDX39A-204ENST00000586558 BAZ1BQ9UIG0 1483 aaKnown RBP34.98■■■■□ 3.19
DDX39A-204ENST00000586558 WIZO95785 1651 aa34.94■■■■□ 3.18
DDX39A-204ENST00000586558 TOP2AP11388 1531 aaKnown RBP34.68■■■■□ 3.14
DDX39A-204ENST00000586558 SUPT5HO00267 1087 aaKnown RBP34.42■■■■□ 3.1
DDX39A-204ENST00000586558 CCDC88BA6NC98 1476 aa34.23■■■■□ 3.07
DDX39A-204ENST00000586558 LAMC3Q9Y6N6 1575 aa34.19■■■■□ 3.06
DDX39A-204ENST00000586558 CADPSQ9ULU8 1353 aa34.17■■■■□ 3.06
DDX39A-204ENST00000586558 NESP48681 1621 aa34.14■■■■□ 3.06
DDX39A-204ENST00000586558 CFTRP13569 1480 aa34.06■■■■□ 3.04
DDX39A-204ENST00000586558 PDS5BQ9NTI5 1447 aa33.96■■■■□ 3.03
DDX39A-204ENST00000586558 ERCC6Q03468 1493 aa33.93■■■■□ 3.02
DDX39A-204ENST00000586558 PRDM2Q13029 1718 aa33.78■■■■□ 3
DDX39A-204ENST00000586558 FANCD2Q9BXW9 1451 aa33.76■■■■□ 3
DDX39A-204ENST00000586558 KIF21AQ7Z4S6 1674 aa33.74■■■□□ 2.99
DDX39A-204ENST00000586558 CEP164Q9UPV0 1460 aa33.71■■■□□ 2.99
DDX39A-204ENST00000586558 THOC2Q8NI27 1593 aaKnown RBP33.59■■■□□ 2.97
DDX39A-204ENST00000586558 MRC2Q9UBG0 1479 aa33.58■■■□□ 2.97
DDX39A-204ENST00000586558 CUX2O14529 1486 aa33.47■■■□□ 2.95
DDX39A-204ENST00000586558 WDR62O43379 1518 aa33.45■■■□□ 2.95
DDX39A-204ENST00000586558 URB2Q14146 1524 aaKnown RBP33.38■■■□□ 2.93
DDX39A-204ENST00000586558 ABCC8Q09428 1581 aa33.34■■■□□ 2.93
DDX39A-204ENST00000586558 DNMBPQ6XZF7 1577 aa33.28■■■□□ 2.92
DDX39A-204ENST00000586558 TOPBP1Q92547 1522 aa33.26■■■□□ 2.91
DDX39A-204ENST00000586558 CUX1P39880 1505 aa33.14■■■□□ 2.9
DDX39A-204ENST00000586558 WRNQ14191 1432 aaPredicted RBP eCLIP33.1■■■□□ 2.893e-13■■■■■ 62.7
DDX39A-204ENST00000586558 POLA1P09884 1462 aaPredicted RBP33.01■■■□□ 2.88
DDX39A-204ENST00000586558 IFT140Q96RY7 1462 aa32.99■■■□□ 2.87
DDX39A-204ENST00000586558 TOP2BQ02880 1626 aa32.99■■■□□ 2.87
DDX39A-204ENST00000586558 FGD5Q6ZNL6 1462 aa32.98■■■□□ 2.87
DDX39A-204ENST00000586558 BIVM-ERCC5R4GMW8 1640 aa32.96■■■□□ 2.87
DDX39A-204ENST00000586558 SYNJ1O43426 1573 aa32.96■■■□□ 2.87
DDX39A-204ENST00000586558 SOGA1O94964 1423 aa32.87■■■□□ 2.85
DDX39A-204ENST00000586558 TARBP1Q13395 1621 aaKnown RBP32.87■■■□□ 2.85
DDX39A-204ENST00000586558 RAD54L2Q9Y4B4 1467 aa32.81■■■□□ 2.84
DDX39A-204ENST00000586558 ZNF608Q9ULD9 1512 aaPredicted RBP32.74■■■□□ 2.83
DDX39A-204ENST00000586558 ABCA10Q8WWZ4 1543 aa32.71■■■□□ 2.83
DDX39A-204ENST00000586558 WDR97A6NE52 1622 aa32.7■■■□□ 2.83
DDX39A-204ENST00000586558 EIF4G3O43432 1585 aaKnown RBP32.66■■■□□ 2.82
DDX39A-204ENST00000586558 AQRO60306 1485 aaKnown RBP eCLIP32.61■■■□□ 2.814e-7■■■■■ 56.8
DDX39A-204ENST00000586558 TDRD9Q8NDG6 1382 aaKnown RBP32.61■■■□□ 2.81
DDX39A-204ENST00000586558 TRIM41Q8WV44 630 aa32.54■■■□□ 2.8
DDX39A-204ENST00000586558 ABCA5Q8WWZ7 1642 aa32.52■■■□□ 2.8
DDX39A-204ENST00000586558 GAPVD1Q14C86 1478 aa32.51■■■□□ 2.79
DDX39A-204ENST00000586558 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
DDX39A-204ENST00000586558 DNAJC5Q9H3Z4 198 aa32.43■■■□□ 2.78
DDX39A-204ENST00000586558 KIF27Q86VH2 1401 aa32.39■■■□□ 2.78
DDX39A-204ENST00000586558 PBRM1Q86U86 1689 aa32.37■■■□□ 2.77
DDX39A-204ENST00000586558 MAGI1Q96QZ7 1491 aaPredicted RBP32.37■■■□□ 2.77
DDX39A-204ENST00000586558 CHIC1Q5VXU3 224 aa32.37■■■□□ 2.77
DDX39A-204ENST00000586558 SNAPC4Q5SXM2 1469 aa32.35■■■□□ 2.77
DDX39A-204ENST00000586558 ERICH3Q5RHP9 1530 aa32.34■■■□□ 2.77
DDX39A-204ENST00000586558 SYNJ2O15056 1496 aa32.23■■■□□ 2.75
DDX39A-204ENST00000586558 ADAMTS12P58397 1594 aa32.19■■■□□ 2.74
DDX39A-204ENST00000586558 IGF1RP08069 1367 aa32.18■■■□□ 2.74
DDX39A-204ENST00000586558 FHAD1B1AJZ9 1412 aa32.17■■■□□ 2.74
DDX39A-204ENST00000586558 CHMP7Q8WUX9 453 aaPredicted RBP32.14■■■□□ 2.74
DDX39A-204ENST00000586558 CHD1O14646 1710 aa32.13■■■□□ 2.73
DDX39A-204ENST00000586558 FBLN2P98095 1184 aa32.13■■■□□ 2.73
DDX39A-204ENST00000586558 OSCARQ8IYS5 282 aa32.11■■■□□ 2.73
DDX39A-204ENST00000586558 CUL7Q14999 1698 aa32.11■■■□□ 2.73
DDX39A-204ENST00000586558 RUSC2Q8N2Y8 1516 aa32.1■■■□□ 2.73
DDX39A-204ENST00000586558 EEA1Q15075 1411 aa32.07■■■□□ 2.72
DDX39A-204ENST00000586558 GRIN2AQ12879 1464 aa32.05■■■□□ 2.72
DDX39A-204ENST00000586558 CARMIL1Q5VZK9 1371 aa32■■■□□ 2.71
DDX39A-204ENST00000586558 NUP160Q12769 1436 aa31.91■■■□□ 2.7
DDX39A-204ENST00000586558 CSRNP3Q8WYN3 585 aa31.89■■■□□ 2.7
DDX39A-204ENST00000586558 RAPGEF2Q9Y4G8 1499 aa31.87■■■□□ 2.69
DDX39A-204ENST00000586558 CLASP1Q7Z460 1538 aa31.85■■■□□ 2.69
DDX39A-204ENST00000586558 PRXQ9BXM0 1461 aa31.85■■■□□ 2.69
DDX39A-204ENST00000586558 CEP170Q5SW79 1584 aa31.84■■■□□ 2.69
DDX39A-204ENST00000586558 FAM9AQ8IZU1 332 aaPredicted RBP31.78■■■□□ 2.68
DDX39A-204ENST00000586558 KIAA0586Q9BVV6 1533 aa31.7■■■□□ 2.66
DDX39A-204ENST00000586558 KIF21BO75037 1637 aa31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms