RNA–Protein interactions for RNA: ENST00000584112.1

CCDC47-206, Transcript of coiled-coil domain containing 47, humanhuman

TSL 2

Gene CCDC47, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-206ENST00000584112 NISCHQ9Y2I1 1504 aa28.06■■■□□ 2.08
CCDC47-206ENST00000584112 ABCC9O60706 1549 aa27.41■■□□□ 1.98
CCDC47-206ENST00000584112 DNAJC5BQ9UF47 199 aa27.13■■□□□ 1.93
CCDC47-206ENST00000584112 DNAJC5Q9H3Z4 198 aa25.86■■□□□ 1.73
CCDC47-206ENST00000584112 CCDC180Q9P1Z9 1646 aa25.77■■□□□ 1.72
CCDC47-206ENST00000584112 PABPN1Q86U42 306 aaKnown RBP eCLIP25.32■■□□□ 1.64
CCDC47-206ENST00000584112 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
CCDC47-206ENST00000584112 UNC13AQ9UPW8 1703 aa24.84■■□□□ 1.57
CCDC47-206ENST00000584112 CECR2Q9BXF3 1484 aa24.78■■□□□ 1.56
CCDC47-206ENST00000584112 NACADO15069 1562 aa24.71■■□□□ 1.55
CCDC47-206ENST00000584112 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
CCDC47-206ENST00000584112 CC2D2AQ9P2K1 1620 aa24.63■■□□□ 1.53
CCDC47-206ENST00000584112 DCAF8L2P0C7V8 631 aa24.46■■□□□ 1.51
CCDC47-206ENST00000584112 TRIM41Q8WV44 630 aa24.22■■□□□ 1.47
CCDC47-206ENST00000584112 EIF4G1Q04637 1599 aaKnown RBP24.17■■□□□ 1.46
CCDC47-206ENST00000584112 CUX2O14529 1486 aa24.08■■□□□ 1.45
CCDC47-206ENST00000584112 SHROOM4Q9ULL8 1493 aa23.98■■□□□ 1.43
CCDC47-206ENST00000584112 MYO15BQ96JP2 1530 aa23.79■■□□□ 1.4
CCDC47-206ENST00000584112 ERCC6Q03468 1493 aa23.69■■□□□ 1.38
CCDC47-206ENST00000584112 SCRIBQ14160 1630 aa23.54■■□□□ 1.36
CCDC47-206ENST00000584112 NESP48681 1621 aa23.15■■□□□ 1.3
CCDC47-206ENST00000584112 THOC2Q8NI27 1593 aaKnown RBP23.13■■□□□ 1.29
CCDC47-206ENST00000584112 AEBP2Q6ZN18 517 aaPredicted RBP23.07■■□□□ 1.28
CCDC47-206ENST00000584112 DCAF1Q9Y4B6 1507 aa22.97■■□□□ 1.27
CCDC47-206ENST00000584112 ZCCHC6Q5VYS8 1495 aaKnown RBP22.92■■□□□ 1.26
CCDC47-206ENST00000584112 SMARCA2P51531 1590 aa22.9■■□□□ 1.26
CCDC47-206ENST00000584112 NCAPD3P42695 1498 aa22.85■■□□□ 1.25
CCDC47-206ENST00000584112 BAZ1AQ9NRL2 1556 aaPredicted RBP22.81■■□□□ 1.24
CCDC47-206ENST00000584112 OSCARQ8IYS5 282 aa22.78■■□□□ 1.24
CCDC47-206ENST00000584112 KIF21AQ7Z4S6 1674 aa22.76■■□□□ 1.23
CCDC47-206ENST00000584112 RIMBP3CA6NJZ7 1639 aa22.73■■□□□ 1.23
CCDC47-206ENST00000584112 RIMBP3BA6NNM3 1639 aa22.73■■□□□ 1.23
CCDC47-206ENST00000584112 RIMBP3Q9UFD9 1639 aa22.73■■□□□ 1.23
CCDC47-206ENST00000584112 TRHP20396 242 aaPredicted RBP22.66■■□□□ 1.22
CCDC47-206ENST00000584112 ATAD2BQ9ULI0 1458 aa22.63■■□□□ 1.21
CCDC47-206ENST00000584112 LAMC3Q9Y6N6 1575 aa22.56■■□□□ 1.2
CCDC47-206ENST00000584112 HMGXB3Q12766 1538 aa22.53■■□□□ 1.2
CCDC47-206ENST00000584112 PDS5BQ9NTI5 1447 aa22.48■■□□□ 1.19
CCDC47-206ENST00000584112 ARHGEF11O15085 1522 aa22.47■■□□□ 1.19
CCDC47-206ENST00000584112 ILDR1Q86SU0 546 aaPredicted RBP22.46■■□□□ 1.19
CCDC47-206ENST00000584112 CYB5RLQ6IPT4 315 aa22.44■■□□□ 1.18
CCDC47-206ENST00000584112 MRC2Q9UBG0 1479 aa22.43■■□□□ 1.18
CCDC47-206ENST00000584112 WDR62O43379 1518 aa22.42■■□□□ 1.18
CCDC47-206ENST00000584112 BAZ1BQ9UIG0 1483 aaKnown RBP22.31■■□□□ 1.16
CCDC47-206ENST00000584112 SMARCA4P51532 1647 aa22.24■■□□□ 1.15
CCDC47-206ENST00000584112 ARAP1Q96P48 1450 aa22.18■■□□□ 1.14
CCDC47-206ENST00000584112 CADPSQ9ULU8 1353 aa22.11■■□□□ 1.13
CCDC47-206ENST00000584112 CEP164Q9UPV0 1460 aa22.03■■□□□ 1.12
CCDC47-206ENST00000584112 PEG3Q9GZU2 1588 aa21.95■■□□□ 1.1
CCDC47-206ENST00000584112 FANCD2Q9BXW9 1451 aa21.9■■□□□ 1.1
CCDC47-206ENST00000584112 URB2Q14146 1524 aaKnown RBP21.87■■□□□ 1.09
CCDC47-206ENST00000584112 ZNF608Q9ULD9 1512 aaPredicted RBP21.87■■□□□ 1.09
CCDC47-206ENST00000584112 CHD1O14646 1710 aa21.78■■□□□ 1.08
CCDC47-206ENST00000584112 RSF1Q96T23 1441 aaPredicted RBP21.75■■□□□ 1.07
CCDC47-206ENST00000584112 MROH2BQ7Z745 1585 aa21.69■■□□□ 1.06
CCDC47-206ENST00000584112 FBLN2P98095 1184 aa21.63■■□□□ 1.05
CCDC47-206ENST00000584112 IFT140Q96RY7 1462 aa21.63■■□□□ 1.05
CCDC47-206ENST00000584112 EIF4G3O43432 1585 aaKnown RBP21.61■■□□□ 1.05
CCDC47-206ENST00000584112 KDM4FA0A1W2PPD8 638 aa21.57■■□□□ 1.04
CCDC47-206ENST00000584112 CFTRP13569 1480 aa21.54■■□□□ 1.04
CCDC47-206ENST00000584112 AQRO60306 1485 aaKnown RBP eCLIP21.47■■□□□ 1.032e-7■■■■■ 27.8
CCDC47-206ENST00000584112 CLASP1Q7Z460 1538 aa21.44■■□□□ 1.02
CCDC47-206ENST00000584112 WIZO95785 1651 aa21.37■■□□□ 1.01
CCDC47-206ENST00000584112 GAPVD1Q14C86 1478 aa21.34■■□□□ 1.01
CCDC47-206ENST00000584112 TOPBP1Q92547 1522 aa21.33■■□□□ 1
CCDC47-206ENST00000584112 KIF13AQ9H1H9 1805 aa21.31■■□□□ 1
CCDC47-206ENST00000584112 TARBP1Q13395 1621 aaKnown RBP21.26■□□□□ 0.99
CCDC47-206ENST00000584112 FBXO41Q8TF61 875 aa21.25■□□□□ 0.99
CCDC47-206ENST00000584112 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
CCDC47-206ENST00000584112 ERCC6L2Q5T890 1561 aa21.23■□□□□ 0.99
CCDC47-206ENST00000584112 HECW2Q9P2P5 1572 aa21.21■□□□□ 0.99
CCDC47-206ENST00000584112 PRDM2Q13029 1718 aa21.21■□□□□ 0.99
CCDC47-206ENST00000584112 LMTK3Q96Q04 1460 aa21.2■□□□□ 0.98
CCDC47-206ENST00000584112 SNAPC4Q5SXM2 1469 aa21.18■□□□□ 0.98
CCDC47-206ENST00000584112 CHMP7Q8WUX9 453 aaPredicted RBP21.16■□□□□ 0.98
CCDC47-206ENST00000584112 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
CCDC47-206ENST00000584112 DNMBPQ6XZF7 1577 aa21.08■□□□□ 0.97
CCDC47-206ENST00000584112 SOCS7O14512 581 aa21.05■□□□□ 0.96
CCDC47-206ENST00000584112 ILDR2Q71H61 639 aa21.05■□□□□ 0.96
CCDC47-206ENST00000584112 KDM6BO15054 1643 aa21.04■□□□□ 0.96
CCDC47-206ENST00000584112 RAD54L2Q9Y4B4 1467 aa21.04■□□□□ 0.96
CCDC47-206ENST00000584112 ABCC8Q09428 1581 aa21.03■□□□□ 0.96
CCDC47-206ENST00000584112 POLA1P09884 1462 aaPredicted RBP21.01■□□□□ 0.95
CCDC47-206ENST00000584112 FAM69CQ0P6D2 419 aa21.01■□□□□ 0.95
CCDC47-206ENST00000584112 ADGRL1O94910 1474 aa21.01■□□□□ 0.95
CCDC47-206ENST00000584112 MAGI1Q96QZ7 1491 aaPredicted RBP20.96■□□□□ 0.95
CCDC47-206ENST00000584112 SYNJ2O15056 1496 aa20.95■□□□□ 0.94
CCDC47-206ENST00000584112 TOP2AP11388 1531 aaKnown RBP20.9■□□□□ 0.94
CCDC47-206ENST00000584112 ABCC10Q5T3U5 1492 aa20.9■□□□□ 0.94
CCDC47-206ENST00000584112 TSPOAP1O95153 1857 aa20.88■□□□□ 0.93
CCDC47-206ENST00000584112 SOGA1O94964 1423 aa20.87■□□□□ 0.93
CCDC47-206ENST00000584112 GRIN2BQ13224 1484 aa20.84■□□□□ 0.93
CCDC47-206ENST00000584112 DIP2BQ9P265 1576 aa20.84■□□□□ 0.93
CCDC47-206ENST00000584112 CEP170Q5SW79 1584 aa20.83■□□□□ 0.92
CCDC47-206ENST00000584112 DISP3Q9P2K9 1392 aa20.79■□□□□ 0.92
CCDC47-206ENST00000584112 WDR97A6NE52 1622 aa20.77■□□□□ 0.92
CCDC47-206ENST00000584112 CCDC88BA6NC98 1476 aa20.73■□□□□ 0.91
CCDC47-206ENST00000584112 PBRM1Q86U86 1689 aa20.71■□□□□ 0.91
CCDC47-206ENST00000584112 FGD5Q6ZNL6 1462 aa20.69■□□□□ 0.9
CCDC47-206ENST00000584112 MAPKBP1O60336 1514 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms