RNA–Protein interactions for RNA: ENST00000582230.5

TOP3A-213, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 588 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-213ENST00000582230 NISCHQ9Y2I1 1504 aa47.87■■■■■ 5.25
TOP3A-213ENST00000582230 CCDC180Q9P1Z9 1646 aa42.33■■■■■ 4.37
TOP3A-213ENST00000582230 ABCC9O60706 1549 aa41.07■■■■■ 4.16
TOP3A-213ENST00000582230 ZCCHC6Q5VYS8 1495 aaKnown RBP39.94■■■■□ 3.98
TOP3A-213ENST00000582230 DCAF8L2P0C7V8 631 aa39.88■■■■□ 3.97
TOP3A-213ENST00000582230 NACADO15069 1562 aa39.77■■■■□ 3.96
TOP3A-213ENST00000582230 RB1CC1Q8TDY2 1594 aa39.7■■■■□ 3.95
TOP3A-213ENST00000582230 MYO15BQ96JP2 1530 aa39.7■■■■□ 3.95
TOP3A-213ENST00000582230 DCAF1Q9Y4B6 1507 aa39.65■■■■□ 3.94
TOP3A-213ENST00000582230 UNC13AQ9UPW8 1703 aa38.65■■■■□ 3.78
TOP3A-213ENST00000582230 SCRIBQ14160 1630 aa38.64■■■■□ 3.78
TOP3A-213ENST00000582230 PABPN1Q86U42 306 aaKnown RBP eCLIP38.48■■■■□ 3.75
TOP3A-213ENST00000582230 BICRAQ9NZM4 1560 aa38.43■■■■□ 3.74
TOP3A-213ENST00000582230 SHROOM4Q9ULL8 1493 aa38.16■■■■□ 3.7
TOP3A-213ENST00000582230 EIF4G1Q04637 1599 aaKnown RBP37.41■■■■□ 3.58
TOP3A-213ENST00000582230 DNAJC5BQ9UF47 199 aa37.35■■■■□ 3.57
TOP3A-213ENST00000582230 CECR2Q9BXF3 1484 aa37.22■■■■□ 3.55
TOP3A-213ENST00000582230 CC2D2AQ9P2K1 1620 aa37.14■■■■□ 3.54
TOP3A-213ENST00000582230 BAZ1AQ9NRL2 1556 aaPredicted RBP37.08■■■■□ 3.53
TOP3A-213ENST00000582230 SMARCA4P51532 1647 aa37.02■■■■□ 3.52
TOP3A-213ENST00000582230 MROH2BQ7Z745 1585 aa36.87■■■■□ 3.49
TOP3A-213ENST00000582230 ATAD2BQ9ULI0 1458 aa36.77■■■■□ 3.48
TOP3A-213ENST00000582230 SMARCA2P51531 1590 aa36.75■■■■□ 3.47
TOP3A-213ENST00000582230 NCAPD3P42695 1498 aa36.72■■■■□ 3.47
TOP3A-213ENST00000582230 PEG3Q9GZU2 1588 aa36.69■■■■□ 3.46
TOP3A-213ENST00000582230 RSF1Q96T23 1441 aaPredicted RBP36.64■■■■□ 3.46
TOP3A-213ENST00000582230 HMGXB3Q12766 1538 aa36.54■■■■□ 3.44
TOP3A-213ENST00000582230 BAZ1BQ9UIG0 1483 aaKnown RBP36.49■■■■□ 3.43
TOP3A-213ENST00000582230 WIZO95785 1651 aa36.45■■■■□ 3.43
TOP3A-213ENST00000582230 TOP2AP11388 1531 aaKnown RBP36.14■■■■□ 3.38
TOP3A-213ENST00000582230 SUPT5HO00267 1087 aaKnown RBP36.02■■■■□ 3.36
TOP3A-213ENST00000582230 CCDC88BA6NC98 1476 aa35.74■■■■□ 3.31
TOP3A-213ENST00000582230 CADPSQ9ULU8 1353 aa35.67■■■■□ 3.3
TOP3A-213ENST00000582230 LAMC3Q9Y6N6 1575 aa35.64■■■■□ 3.3
TOP3A-213ENST00000582230 NESP48681 1621 aa35.63■■■■□ 3.29
TOP3A-213ENST00000582230 CFTRP13569 1480 aa35.53■■■■□ 3.28
TOP3A-213ENST00000582230 PDS5BQ9NTI5 1447 aa35.45■■■■□ 3.27
TOP3A-213ENST00000582230 ERCC6Q03468 1493 aa35.4■■■■□ 3.26
TOP3A-213ENST00000582230 FANCD2Q9BXW9 1451 aa35.23■■■■□ 3.23
TOP3A-213ENST00000582230 KIF21AQ7Z4S6 1674 aa35.16■■■■□ 3.22
TOP3A-213ENST00000582230 CEP164Q9UPV0 1460 aa35.15■■■■□ 3.22
TOP3A-213ENST00000582230 PRDM2Q13029 1718 aa35.15■■■■□ 3.22
TOP3A-213ENST00000582230 MRC2Q9UBG0 1479 aa35.02■■■■□ 3.2
TOP3A-213ENST00000582230 THOC2Q8NI27 1593 aaKnown RBP34.98■■■■□ 3.19
TOP3A-213ENST00000582230 CUX2O14529 1486 aa34.9■■■■□ 3.18
TOP3A-213ENST00000582230 WDR62O43379 1518 aa34.86■■■■□ 3.17
TOP3A-213ENST00000582230 URB2Q14146 1524 aaKnown RBP34.83■■■■□ 3.17
TOP3A-213ENST00000582230 ABCC8Q09428 1581 aa34.79■■■■□ 3.16
TOP3A-213ENST00000582230 TOPBP1Q92547 1522 aa34.7■■■■□ 3.14
TOP3A-213ENST00000582230 DNMBPQ6XZF7 1577 aa34.68■■■■□ 3.14
TOP3A-213ENST00000582230 CUX1P39880 1505 aa34.56■■■■□ 3.12
TOP3A-213ENST00000582230 WRNQ14191 1432 aaPredicted RBP eCLIP34.55■■■■□ 3.12
TOP3A-213ENST00000582230 POLA1P09884 1462 aaPredicted RBP34.43■■■■□ 3.1
TOP3A-213ENST00000582230 IFT140Q96RY7 1462 aa34.42■■■■□ 3.1
TOP3A-213ENST00000582230 FGD5Q6ZNL6 1462 aa34.4■■■■□ 3.1
TOP3A-213ENST00000582230 TOP2BQ02880 1626 aa34.38■■■■□ 3.09
TOP3A-213ENST00000582230 SYNJ1O43426 1573 aa34.36■■■■□ 3.09
TOP3A-213ENST00000582230 SOGA1O94964 1423 aa34.35■■■■□ 3.09
TOP3A-213ENST00000582230 BIVM-ERCC5R4GMW8 1640 aa34.34■■■■□ 3.09
TOP3A-213ENST00000582230 RAD54L2Q9Y4B4 1467 aa34.27■■■■□ 3.08
TOP3A-213ENST00000582230 TARBP1Q13395 1621 aaKnown RBP34.26■■■■□ 3.07
TOP3A-213ENST00000582230 ZNF608Q9ULD9 1512 aaPredicted RBP34.17■■■■□ 3.06
TOP3A-213ENST00000582230 ABCA10Q8WWZ4 1543 aa34.12■■■■□ 3.05
TOP3A-213ENST00000582230 TDRD9Q8NDG6 1382 aaKnown RBP34.08■■■■□ 3.05
TOP3A-213ENST00000582230 WDR97A6NE52 1622 aa34.06■■■■□ 3.04
TOP3A-213ENST00000582230 AQRO60306 1485 aaKnown RBP eCLIP34.06■■■■□ 3.044e-6■■□□□ 14.3
TOP3A-213ENST00000582230 TRIM41Q8WV44 630 aa34.05■■■■□ 3.04
TOP3A-213ENST00000582230 EIF4G3O43432 1585 aaKnown RBP34.02■■■■□ 3.04
TOP3A-213ENST00000582230 GAPVD1Q14C86 1478 aa33.94■■■■□ 3.02
TOP3A-213ENST00000582230 ABCA5Q8WWZ7 1642 aa33.89■■■■□ 3.02
TOP3A-213ENST00000582230 GRIN2BQ13224 1484 aa33.88■■■■□ 3.01
TOP3A-213ENST00000582230 CHIC1Q5VXU3 224 aa33.87■■■■□ 3.01
TOP3A-213ENST00000582230 KIF27Q86VH2 1401 aa33.81■■■■□ 3
TOP3A-213ENST00000582230 MAGI1Q96QZ7 1491 aaPredicted RBP33.76■■■□□ 2.99
TOP3A-213ENST00000582230 DNAJC5Q9H3Z4 198 aa33.74■■■□□ 2.99
TOP3A-213ENST00000582230 SNAPC4Q5SXM2 1469 aa33.74■■■□□ 2.99
TOP3A-213ENST00000582230 PBRM1Q86U86 1689 aa33.72■■■□□ 2.99
TOP3A-213ENST00000582230 ERICH3Q5RHP9 1530 aa33.72■■■□□ 2.99
TOP3A-213ENST00000582230 IGF1RP08069 1367 aa33.62■■■□□ 2.97
TOP3A-213ENST00000582230 FBLN2P98095 1184 aa33.61■■■□□ 2.97
TOP3A-213ENST00000582230 CHMP7Q8WUX9 453 aaPredicted RBP33.61■■■□□ 2.97
TOP3A-213ENST00000582230 SYNJ2O15056 1496 aa33.61■■■□□ 2.97
TOP3A-213ENST00000582230 OSCARQ8IYS5 282 aa33.58■■■□□ 2.97
TOP3A-213ENST00000582230 FHAD1B1AJZ9 1412 aa33.58■■■□□ 2.97
TOP3A-213ENST00000582230 RUSC2Q8N2Y8 1516 aa33.54■■■□□ 2.96
TOP3A-213ENST00000582230 ADAMTS12P58397 1594 aa33.53■■■□□ 2.96
TOP3A-213ENST00000582230 CHD1O14646 1710 aa33.47■■■□□ 2.95
TOP3A-213ENST00000582230 EEA1Q15075 1411 aa33.45■■■□□ 2.95
TOP3A-213ENST00000582230 CUL7Q14999 1698 aa33.45■■■□□ 2.94
TOP3A-213ENST00000582230 CARMIL1Q5VZK9 1371 aa33.44■■■□□ 2.94
TOP3A-213ENST00000582230 GRIN2AQ12879 1464 aa33.43■■■□□ 2.94
TOP3A-213ENST00000582230 CSRNP3Q8WYN3 585 aa33.36■■■□□ 2.93
TOP3A-213ENST00000582230 NUP160Q12769 1436 aa33.28■■■□□ 2.92
TOP3A-213ENST00000582230 RAPGEF2Q9Y4G8 1499 aa33.27■■■□□ 2.92
TOP3A-213ENST00000582230 FAM9AQ8IZU1 332 aaPredicted RBP33.27■■■□□ 2.92
TOP3A-213ENST00000582230 PRXQ9BXM0 1461 aa33.25■■■□□ 2.91
TOP3A-213ENST00000582230 CEP170Q5SW79 1584 aa33.2■■■□□ 2.91
TOP3A-213ENST00000582230 CLASP1Q7Z460 1538 aa33.19■■■□□ 2.9
TOP3A-213ENST00000582230 KIAA0586Q9BVV6 1533 aa33.07■■■□□ 2.89
TOP3A-213ENST00000582230 KIF21BO75037 1637 aa32.99■■■□□ 2.87
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms