RNA–Protein interactions for RNA: ENST00000581709.1

RTTN-208, Transcript of rotatin, humanhuman

TSL 3

Gene RTTN, Length 572 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTTN-208ENST00000581709 NISCHQ9Y2I1 1504 aa21.1■□□□□ 0.97
RTTN-208ENST00000581709 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
RTTN-208ENST00000581709 ABCC9O60706 1549 aa18.16■□□□□ 0.5
RTTN-208ENST00000581709 DCAF8L2P0C7V8 631 aa17.8■□□□□ 0.44
RTTN-208ENST00000581709 ZCCHC6Q5VYS8 1495 aaKnown RBP17.56■□□□□ 0.4
RTTN-208ENST00000581709 NACADO15069 1562 aa17.53■□□□□ 0.4
RTTN-208ENST00000581709 RB1CC1Q8TDY2 1594 aa17.49■□□□□ 0.39
RTTN-208ENST00000581709 MYO15BQ96JP2 1530 aa17.47■□□□□ 0.39
RTTN-208ENST00000581709 DCAF1Q9Y4B6 1507 aa17.45■□□□□ 0.38
RTTN-208ENST00000581709 PABPN1Q86U42 306 aaKnown RBP eCLIP17.11■□□□□ 0.33
RTTN-208ENST00000581709 SCRIBQ14160 1630 aa17■□□□□ 0.31
RTTN-208ENST00000581709 UNC13AQ9UPW8 1703 aa16.9■□□□□ 0.3
RTTN-208ENST00000581709 BICRAQ9NZM4 1560 aa16.89■□□□□ 0.3
RTTN-208ENST00000581709 SHROOM4Q9ULL8 1493 aa16.85■□□□□ 0.29
RTTN-208ENST00000581709 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
RTTN-208ENST00000581709 EIF4G1Q04637 1599 aaKnown RBP16.48■□□□□ 0.23
RTTN-208ENST00000581709 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
RTTN-208ENST00000581709 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
RTTN-208ENST00000581709 BAZ1AQ9NRL2 1556 aaPredicted RBP16.34■□□□□ 0.21
RTTN-208ENST00000581709 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
RTTN-208ENST00000581709 SMARCA4P51532 1647 aa16.27■□□□□ 0.2
RTTN-208ENST00000581709 AEBP2Q6ZN18 517 aaPredicted RBP16.25■□□□□ 0.19
RTTN-208ENST00000581709 MROH2BQ7Z745 1585 aa16.25■□□□□ 0.19
RTTN-208ENST00000581709 ATAD2BQ9ULI0 1458 aa16.23■□□□□ 0.19
RTTN-208ENST00000581709 NCAPD3P42695 1498 aa16.22■□□□□ 0.19
RTTN-208ENST00000581709 SMARCA2P51531 1590 aa16.2■□□□□ 0.18
RTTN-208ENST00000581709 RSF1Q96T23 1441 aaPredicted RBP16.19■□□□□ 0.18
RTTN-208ENST00000581709 PEG3Q9GZU2 1588 aa16.12■□□□□ 0.17
RTTN-208ENST00000581709 BAZ1BQ9UIG0 1483 aaKnown RBP16.11■□□□□ 0.17
RTTN-208ENST00000581709 HMGXB3Q12766 1538 aa16.07■□□□□ 0.16
RTTN-208ENST00000581709 WIZO95785 1651 aa16.02■□□□□ 0.16
RTTN-208ENST00000581709 SUPT5HO00267 1087 aaKnown RBP16.02■□□□□ 0.16
RTTN-208ENST00000581709 TOP2AP11388 1531 aaKnown RBP15.9■□□□□ 0.14
RTTN-208ENST00000581709 CADPSQ9ULU8 1353 aa15.8■□□□□ 0.12
RTTN-208ENST00000581709 CCDC88BA6NC98 1476 aa15.78■□□□□ 0.12
RTTN-208ENST00000581709 NESP48681 1621 aa15.73■□□□□ 0.11
RTTN-208ENST00000581709 PDS5BQ9NTI5 1447 aa15.7■□□□□ 0.1
RTTN-208ENST00000581709 LAMC3Q9Y6N6 1575 aa15.7■□□□□ 0.1
RTTN-208ENST00000581709 CFTRP13569 1480 aa15.68■□□□□ 0.1
RTTN-208ENST00000581709 ERCC6Q03468 1493 aa15.68■□□□□ 0.1
RTTN-208ENST00000581709 FANCD2Q9BXW9 1451 aa15.57■□□□□ 0.08
RTTN-208ENST00000581709 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.07
RTTN-208ENST00000581709 MRC2Q9UBG0 1479 aa15.46■□□□□ 0.06
RTTN-208ENST00000581709 KIF21AQ7Z4S6 1674 aa15.42■□□□□ 0.06
RTTN-208ENST00000581709 CUX2O14529 1486 aa15.41■□□□□ 0.06
RTTN-208ENST00000581709 ABCC8Q09428 1581 aa15.37■□□□□ 0.05
RTTN-208ENST00000581709 URB2Q14146 1524 aaKnown RBP15.36■□□□□ 0.05
RTTN-208ENST00000581709 THOC2Q8NI27 1593 aaKnown RBP15.36■□□□□ 0.05
RTTN-208ENST00000581709 WDR62O43379 1518 aa15.34■□□□□ 0.05
RTTN-208ENST00000581709 PRDM2Q13029 1718 aa15.34■□□□□ 0.05
RTTN-208ENST00000581709 TOPBP1Q92547 1522 aa15.3■□□□□ 0.04
RTTN-208ENST00000581709 WRNQ14191 1432 aaPredicted RBP eCLIP15.26■□□□□ 0.03
RTTN-208ENST00000581709 DNMBPQ6XZF7 1577 aa15.26■□□□□ 0.03
RTTN-208ENST00000581709 CUX1P39880 1505 aa15.22■□□□□ 0.03
RTTN-208ENST00000581709 SOGA1O94964 1423 aa15.22■□□□□ 0.03
RTTN-208ENST00000581709 IFT140Q96RY7 1462 aa15.2■□□□□ 0.02
RTTN-208ENST00000581709 POLA1P09884 1462 aaPredicted RBP15.19■□□□□ 0.02
RTTN-208ENST00000581709 FGD5Q6ZNL6 1462 aa15.17■□□□□ 0.02
RTTN-208ENST00000581709 TRIM41Q8WV44 630 aa15.15■□□□□ 0.02
RTTN-208ENST00000581709 RAD54L2Q9Y4B4 1467 aa15.14■□□□□ 0.01
RTTN-208ENST00000581709 TOP2BQ02880 1626 aa15.12■□□□□ 0.01
RTTN-208ENST00000581709 TDRD9Q8NDG6 1382 aaKnown RBP15.11■□□□□ 0.01
RTTN-208ENST00000581709 SYNJ1O43426 1573 aa15.1■□□□□ 0.01
RTTN-208ENST00000581709 ZNF608Q9ULD9 1512 aaPredicted RBP15.09■□□□□ 0.01
RTTN-208ENST00000581709 AQRO60306 1485 aaKnown RBP eCLIP15.08■□□□□ 0.01
RTTN-208ENST00000581709 TARBP1Q13395 1621 aaKnown RBP15.06■□□□□ 0
RTTN-208ENST00000581709 BIVM-ERCC5R4GMW8 1640 aa15.06■□□□□ 0
RTTN-208ENST00000581709 ABCA10Q8WWZ4 1543 aa15.04■□□□□ -0
RTTN-208ENST00000581709 GAPVD1Q14C86 1478 aa15□□□□□ -0.01
RTTN-208ENST00000581709 FBLN2P98095 1184 aa14.99□□□□□ -0.01
RTTN-208ENST00000581709 GRIN2BQ13224 1484 aa14.97□□□□□ -0.01
RTTN-208ENST00000581709 CHMP7Q8WUX9 453 aaPredicted RBP14.97□□□□□ -0.01
RTTN-208ENST00000581709 WDR97A6NE52 1622 aa14.96□□□□□ -0.01
RTTN-208ENST00000581709 KIF27Q86VH2 1401 aa14.96□□□□□ -0.01
RTTN-208ENST00000581709 OSCARQ8IYS5 282 aa14.96□□□□□ -0.01
RTTN-208ENST00000581709 EIF4G3O43432 1585 aaKnown RBP14.94□□□□□ -0.02
RTTN-208ENST00000581709 IGF1RP08069 1367 aa14.91□□□□□ -0.02
RTTN-208ENST00000581709 SNAPC4Q5SXM2 1469 aa14.89□□□□□ -0.03
RTTN-208ENST00000581709 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
RTTN-208ENST00000581709 DNAJC5Q9H3Z4 198 aa14.88□□□□□ -0.03
RTTN-208ENST00000581709 ABCA5Q8WWZ7 1642 aa14.87□□□□□ -0.03
RTTN-208ENST00000581709 ERICH3Q5RHP9 1530 aa14.86□□□□□ -0.03
RTTN-208ENST00000581709 FHAD1B1AJZ9 1412 aa14.84□□□□□ -0.03
RTTN-208ENST00000581709 SYNJ2O15056 1496 aa14.84□□□□□ -0.03
RTTN-208ENST00000581709 CSRNP3Q8WYN3 585 aa14.82□□□□□ -0.04
RTTN-208ENST00000581709 CARMIL1Q5VZK9 1371 aa14.82□□□□□ -0.04
RTTN-208ENST00000581709 FAM9AQ8IZU1 332 aaPredicted RBP14.81□□□□□ -0.04
RTTN-208ENST00000581709 RUSC2Q8N2Y8 1516 aa14.81□□□□□ -0.04
RTTN-208ENST00000581709 PBRM1Q86U86 1689 aa14.77□□□□□ -0.04
RTTN-208ENST00000581709 EEA1Q15075 1411 aa14.77□□□□□ -0.04
RTTN-208ENST00000581709 GRIN2AQ12879 1464 aa14.75□□□□□ -0.05
RTTN-208ENST00000581709 ADAMTS12P58397 1594 aa14.73□□□□□ -0.05
RTTN-208ENST00000581709 RAPGEF2Q9Y4G8 1499 aa14.7□□□□□ -0.06
RTTN-208ENST00000581709 CUL7Q14999 1698 aa14.69□□□□□ -0.06
RTTN-208ENST00000581709 NUP160Q12769 1436 aa14.68□□□□□ -0.06
RTTN-208ENST00000581709 JPH4Q96JJ6 628 aa14.68□□□□□ -0.06
RTTN-208ENST00000581709 CHD1O14646 1710 aa14.68□□□□□ -0.06
RTTN-208ENST00000581709 PRXQ9BXM0 1461 aa14.66□□□□□ -0.06
RTTN-208ENST00000581709 KIAA0586Q9BVV6 1533 aa14.62□□□□□ -0.07
RTTN-208ENST00000581709 CEP170Q5SW79 1584 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms