RNA–Protein interactions for RNA: ENST00000581536.5

TOP3A-211, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-211ENST00000581536 AEBP2Q6ZN18 517 aaPredicted RBP26.62■■□□□ 1.85
TOP3A-211ENST00000581536 CHIC1Q5VXU3 224 aa26.01■■□□□ 1.75
TOP3A-211ENST00000581536 NISCHQ9Y2I1 1504 aa23.81■■□□□ 1.4
TOP3A-211ENST00000581536 PHF23Q9BUL5 403 aaPredicted RBP22.83■■□□□ 1.25
TOP3A-211ENST00000581536 SENP3Q9H4L4 574 aaPredicted RBP22.68■■□□□ 1.22
TOP3A-211ENST00000581536 CCDC180Q9P1Z9 1646 aa21.18■□□□□ 0.98
TOP3A-211ENST00000581536 PLPPR3Q6T4P5 718 aa21.13■□□□□ 0.97
TOP3A-211ENST00000581536 ABCC9O60706 1549 aa21.02■□□□□ 0.96
TOP3A-211ENST00000581536 FOXD1Q16676 465 aa21.01■□□□□ 0.95
TOP3A-211ENST00000581536 PPP6R1Q9UPN7 881 aa20.16■□□□□ 0.82
TOP3A-211ENST00000581536 DCAF8L2P0C7V8 631 aa20.14■□□□□ 0.81
TOP3A-211ENST00000581536 ADRA2BP18089 450 aa20.13■□□□□ 0.81
TOP3A-211ENST00000581536 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
TOP3A-211ENST00000581536 NACADO15069 1562 aa19.96■□□□□ 0.79
TOP3A-211ENST00000581536 PIAS4Q8N2W9 510 aaPredicted RBP19.8■□□□□ 0.76
TOP3A-211ENST00000581536 ZCCHC6Q5VYS8 1495 aaKnown RBP19.75■□□□□ 0.75
TOP3A-211ENST00000581536 UNC13AQ9UPW8 1703 aa19.74■□□□□ 0.75
TOP3A-211ENST00000581536 MYO15BQ96JP2 1530 aa19.72■□□□□ 0.75
TOP3A-211ENST00000581536 PABPN1Q86U42 306 aaKnown RBP eCLIP19.69■□□□□ 0.74
TOP3A-211ENST00000581536 DCAF1Q9Y4B6 1507 aa19.61■□□□□ 0.73
TOP3A-211ENST00000581536 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
TOP3A-211ENST00000581536 BICRAQ9NZM4 1560 aa19.53■□□□□ 0.72
TOP3A-211ENST00000581536 MSH5O43196 834 aa19.45■□□□□ 0.7
TOP3A-211ENST00000581536 SCRIBQ14160 1630 aa19.41■□□□□ 0.7
TOP3A-211ENST00000581536 SHROOM4Q9ULL8 1493 aa19.08■□□□□ 0.64
TOP3A-211ENST00000581536 CC2D2AQ9P2K1 1620 aa18.99■□□□□ 0.63
TOP3A-211ENST00000581536 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
TOP3A-211ENST00000581536 CECR2Q9BXF3 1484 aa18.86■□□□□ 0.61
TOP3A-211ENST00000581536 PPP4R3CPQ6ZMV5 832 aa18.58■□□□□ 0.56
TOP3A-211ENST00000581536 SCAF1Q9H7N4 1312 aaKnown RBP18.54■□□□□ 0.56
TOP3A-211ENST00000581536 SMARCA4P51532 1647 aa18.51■□□□□ 0.55
TOP3A-211ENST00000581536 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.55
TOP3A-211ENST00000581536 NCAPD3P42695 1498 aa18.46■□□□□ 0.54
TOP3A-211ENST00000581536 BAZ1AQ9NRL2 1556 aaPredicted RBP18.42■□□□□ 0.54
TOP3A-211ENST00000581536 MROH2BQ7Z745 1585 aa18.4■□□□□ 0.54
TOP3A-211ENST00000581536 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
TOP3A-211ENST00000581536 HMGXB3Q12766 1538 aa18.29■□□□□ 0.52
TOP3A-211ENST00000581536 PEG3Q9GZU2 1588 aa18.28■□□□□ 0.52
TOP3A-211ENST00000581536 BAZ1BQ9UIG0 1483 aaKnown RBP18.27■□□□□ 0.52
TOP3A-211ENST00000581536 MAPK8IP2Q13387 824 aaPredicted RBP18.27■□□□□ 0.52
TOP3A-211ENST00000581536 WIZO95785 1651 aa18.23■□□□□ 0.51
TOP3A-211ENST00000581536 NESP48681 1621 aa18.17■□□□□ 0.5
TOP3A-211ENST00000581536 NCBP3Q53F19 620 aaKnown RBP18.14■□□□□ 0.49
TOP3A-211ENST00000581536 RSF1Q96T23 1441 aaPredicted RBP18.11■□□□□ 0.49
TOP3A-211ENST00000581536 CNKSR2Q8WXI2 1034 aa18.1■□□□□ 0.49
TOP3A-211ENST00000581536 DMRT2Q9Y5R5 561 aa18.08■□□□□ 0.48
TOP3A-211ENST00000581536 ERCC6Q03468 1493 aa18.06■□□□□ 0.48
TOP3A-211ENST00000581536 KCNA4P22459 653 aa18.05■□□□□ 0.48
TOP3A-211ENST00000581536 LAMC3Q9Y6N6 1575 aa17.98■□□□□ 0.47
TOP3A-211ENST00000581536 KIF21AQ7Z4S6 1674 aa17.93■□□□□ 0.46
TOP3A-211ENST00000581536 CADPSQ9ULU8 1353 aa17.93■□□□□ 0.46
TOP3A-211ENST00000581536 TOP2AP11388 1531 aaKnown RBP17.9■□□□□ 0.46
TOP3A-211ENST00000581536 CUX2O14529 1486 aa17.88■□□□□ 0.45
TOP3A-211ENST00000581536 PDS5BQ9NTI5 1447 aa17.87■□□□□ 0.45
TOP3A-211ENST00000581536 THOC2Q8NI27 1593 aaKnown RBP17.84■□□□□ 0.45
TOP3A-211ENST00000581536 NPM3O75607 178 aaKnown RBP17.8■□□□□ 0.44
TOP3A-211ENST00000581536 CCDC88BA6NC98 1476 aa17.78■□□□□ 0.44
TOP3A-211ENST00000581536 RNF216Q9NWF9 866 aaPredicted RBP17.77■□□□□ 0.44
TOP3A-211ENST00000581536 CFTRP13569 1480 aa17.76■□□□□ 0.43
TOP3A-211ENST00000581536 POTEDQ86YR6 584 aa17.74■□□□□ 0.43
TOP3A-211ENST00000581536 FANCD2Q9BXW9 1451 aa17.72■□□□□ 0.43
TOP3A-211ENST00000581536 HOXD11P31277 338 aaPredicted RBP17.7■□□□□ 0.42
TOP3A-211ENST00000581536 MRC2Q9UBG0 1479 aa17.69■□□□□ 0.42
TOP3A-211ENST00000581536 DNAJC5Q9H3Z4 198 aa17.68■□□□□ 0.42
TOP3A-211ENST00000581536 CEP164Q9UPV0 1460 aa17.68■□□□□ 0.42
TOP3A-211ENST00000581536 PRDM2Q13029 1718 aa17.64■□□□□ 0.41
TOP3A-211ENST00000581536 WDR62O43379 1518 aa17.63■□□□□ 0.41
TOP3A-211ENST00000581536 SUPT5HO00267 1087 aaKnown RBP17.63■□□□□ 0.41
TOP3A-211ENST00000581536 URB2Q14146 1524 aaKnown RBP17.58■□□□□ 0.41
TOP3A-211ENST00000581536 TOPBP1Q92547 1522 aa17.42■□□□□ 0.38
TOP3A-211ENST00000581536 DNMBPQ6XZF7 1577 aa17.36■□□□□ 0.37
TOP3A-211ENST00000581536 ABCC8Q09428 1581 aa17.35■□□□□ 0.37
TOP3A-211ENST00000581536 ZNF608Q9ULD9 1512 aaPredicted RBP17.34■□□□□ 0.37
TOP3A-211ENST00000581536 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
TOP3A-211ENST00000581536 RAD54L2Q9Y4B4 1467 aa17.26■□□□□ 0.35
TOP3A-211ENST00000581536 TARBP1Q13395 1621 aaKnown RBP17.26■□□□□ 0.35
TOP3A-211ENST00000581536 DCAF8L1A6NGE4 600 aa17.26■□□□□ 0.35
TOP3A-211ENST00000581536 CUX1P39880 1505 aa17.26■□□□□ 0.35
TOP3A-211ENST00000581536 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
TOP3A-211ENST00000581536 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.359e-9■■■■■ 37.6
TOP3A-211ENST00000581536 OSCARQ8IYS5 282 aa17.23■□□□□ 0.35
TOP3A-211ENST00000581536 SOGA1O94964 1423 aa17.22■□□□□ 0.35
TOP3A-211ENST00000581536 SLC4A1APQ9BWU0 796 aaKnown RBP17.21■□□□□ 0.35
TOP3A-211ENST00000581536 EIF4G3O43432 1585 aaKnown RBP17.2■□□□□ 0.34
TOP3A-211ENST00000581536 FGD5Q6ZNL6 1462 aa17.2■□□□□ 0.34
TOP3A-211ENST00000581536 TDRD9Q8NDG6 1382 aaKnown RBP17.18■□□□□ 0.34
TOP3A-211ENST00000581536 FBLN2P98095 1184 aa17.1■□□□□ 0.33
TOP3A-211ENST00000581536 CHD1O14646 1710 aa17.09■□□□□ 0.33
TOP3A-211ENST00000581536 TRIM41Q8WV44 630 aa17.08■□□□□ 0.32
TOP3A-211ENST00000581536 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
TOP3A-211ENST00000581536 SYNJ1O43426 1573 aa17.05■□□□□ 0.32
TOP3A-211ENST00000581536 WRNQ14191 1432 aaPredicted RBP eCLIP17.04■□□□□ 0.32
TOP3A-211ENST00000581536 TOP2BQ02880 1626 aa17.02■□□□□ 0.31
TOP3A-211ENST00000581536 BIVM-ERCC5R4GMW8 1640 aa17.02■□□□□ 0.31
TOP3A-211ENST00000581536 SNAPC4Q5SXM2 1469 aa17.01■□□□□ 0.31
TOP3A-211ENST00000581536 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
TOP3A-211ENST00000581536 PBRM1Q86U86 1689 aa16.99■□□□□ 0.31
TOP3A-211ENST00000581536 ABCA10Q8WWZ4 1543 aa16.99■□□□□ 0.31
TOP3A-211ENST00000581536 CHMP7Q8WUX9 453 aaPredicted RBP16.98■□□□□ 0.31
TOP3A-211ENST00000581536 GRIN2BQ13224 1484 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms