RNA–Protein interactions for RNA: ENST00000580986.1

CCDC47-203, Transcript of coiled-coil domain containing 47, humanhuman

TSL 4

Gene CCDC47, Length 552 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-203ENST00000580986 AEBP2Q6ZN18 517 aaPredicted RBP26.51■■□□□ 1.83
CCDC47-203ENST00000580986 CHIC1Q5VXU3 224 aa24.99■■□□□ 1.59
CCDC47-203ENST00000580986 NISCHQ9Y2I1 1504 aa24.8■■□□□ 1.56
CCDC47-203ENST00000580986 SENP3Q9H4L4 574 aaPredicted RBP22.69■■□□□ 1.22
CCDC47-203ENST00000580986 PHF23Q9BUL5 403 aaPredicted RBP22.37■■□□□ 1.17
CCDC47-203ENST00000580986 CCDC180Q9P1Z9 1646 aa21.99■■□□□ 1.11
CCDC47-203ENST00000580986 FOXD1Q16676 465 aa21.15■□□□□ 0.98
CCDC47-203ENST00000580986 ABCC9O60706 1549 aa20.99■□□□□ 0.95
CCDC47-203ENST00000580986 ZCCHC6Q5VYS8 1495 aaKnown RBP20.76■□□□□ 0.91
CCDC47-203ENST00000580986 DCAF1Q9Y4B6 1507 aa20.65■□□□□ 0.9
CCDC47-203ENST00000580986 MYO15BQ96JP2 1530 aa20.64■□□□□ 0.9
CCDC47-203ENST00000580986 NACADO15069 1562 aa20.56■□□□□ 0.88
CCDC47-203ENST00000580986 RB1CC1Q8TDY2 1594 aa20.47■□□□□ 0.87
CCDC47-203ENST00000580986 DCAF8L2P0C7V8 631 aa20.33■□□□□ 0.85
CCDC47-203ENST00000580986 UNC13AQ9UPW8 1703 aa19.99■□□□□ 0.79
CCDC47-203ENST00000580986 SCRIBQ14160 1630 aa19.93■□□□□ 0.78
CCDC47-203ENST00000580986 MSH5O43196 834 aa19.91■□□□□ 0.78
CCDC47-203ENST00000580986 PLPPR3Q6T4P5 718 aa19.91■□□□□ 0.78
CCDC47-203ENST00000580986 BICRAQ9NZM4 1560 aa19.82■□□□□ 0.76
CCDC47-203ENST00000580986 SHROOM4Q9ULL8 1493 aa19.79■□□□□ 0.76
CCDC47-203ENST00000580986 POTEDQ86YR6 584 aa19.76■□□□□ 0.75
CCDC47-203ENST00000580986 PIAS4Q8N2W9 510 aaPredicted RBP19.76■□□□□ 0.75
CCDC47-203ENST00000580986 PPP6R1Q9UPN7 881 aa19.61■□□□□ 0.73
CCDC47-203ENST00000580986 PABPN1Q86U42 306 aaKnown RBP eCLIP19.59■□□□□ 0.73
CCDC47-203ENST00000580986 ADRA2BP18089 450 aa19.56■□□□□ 0.72
CCDC47-203ENST00000580986 EIF4G1Q04637 1599 aaKnown RBP19.27■□□□□ 0.67
CCDC47-203ENST00000580986 BAZ1AQ9NRL2 1556 aaPredicted RBP19.23■□□□□ 0.67
CCDC47-203ENST00000580986 CECR2Q9BXF3 1484 aa19.2■□□□□ 0.66
CCDC47-203ENST00000580986 SMARCA4P51532 1647 aa19.18■□□□□ 0.66
CCDC47-203ENST00000580986 CC2D2AQ9P2K1 1620 aa19.07■□□□□ 0.64
CCDC47-203ENST00000580986 MROH2BQ7Z745 1585 aa19.06■□□□□ 0.64
CCDC47-203ENST00000580986 PEG3Q9GZU2 1588 aa19.06■□□□□ 0.64
CCDC47-203ENST00000580986 SMARCA2P51531 1590 aa19.02■□□□□ 0.63
CCDC47-203ENST00000580986 RSF1Q96T23 1441 aaPredicted RBP18.99■□□□□ 0.63
CCDC47-203ENST00000580986 ATAD2BQ9ULI0 1458 aa18.97■□□□□ 0.63
CCDC47-203ENST00000580986 NCAPD3P42695 1498 aa18.95■□□□□ 0.62
CCDC47-203ENST00000580986 HMGXB3Q12766 1538 aa18.92■□□□□ 0.62
CCDC47-203ENST00000580986 DNAJC5BQ9UF47 199 aa18.89■□□□□ 0.61
CCDC47-203ENST00000580986 WIZO95785 1651 aa18.87■□□□□ 0.61
CCDC47-203ENST00000580986 BAZ1BQ9UIG0 1483 aaKnown RBP18.82■□□□□ 0.6
CCDC47-203ENST00000580986 TOP2AP11388 1531 aaKnown RBP18.76■□□□□ 0.59
CCDC47-203ENST00000580986 SUPT5HO00267 1087 aaKnown RBP18.58■□□□□ 0.56
CCDC47-203ENST00000580986 CCDC88BA6NC98 1476 aa18.47■□□□□ 0.55
CCDC47-203ENST00000580986 LAMC3Q9Y6N6 1575 aa18.42■□□□□ 0.54
CCDC47-203ENST00000580986 CFTRP13569 1480 aa18.37■□□□□ 0.53
CCDC47-203ENST00000580986 CADPSQ9ULU8 1353 aa18.36■□□□□ 0.53
CCDC47-203ENST00000580986 PRDM2Q13029 1718 aa18.31■□□□□ 0.52
CCDC47-203ENST00000580986 NESP48681 1621 aa18.26■□□□□ 0.51
CCDC47-203ENST00000580986 PDS5BQ9NTI5 1447 aa18.23■□□□□ 0.51
CCDC47-203ENST00000580986 FANCD2Q9BXW9 1451 aa18.14■□□□□ 0.5
CCDC47-203ENST00000580986 KIF21AQ7Z4S6 1674 aa18.12■□□□□ 0.49
CCDC47-203ENST00000580986 CEP164Q9UPV0 1460 aa18.11■□□□□ 0.49
CCDC47-203ENST00000580986 ERCC6Q03468 1493 aa18.09■□□□□ 0.49
CCDC47-203ENST00000580986 MAPK8IP2Q13387 824 aaPredicted RBP18.03■□□□□ 0.48
CCDC47-203ENST00000580986 THOC2Q8NI27 1593 aaKnown RBP18.03■□□□□ 0.48
CCDC47-203ENST00000580986 MRC2Q9UBG0 1479 aa18.01■□□□□ 0.47
CCDC47-203ENST00000580986 ABCC8Q09428 1581 aa18■□□□□ 0.47
CCDC47-203ENST00000580986 WDR62O43379 1518 aa17.98■□□□□ 0.47
CCDC47-203ENST00000580986 DNMBPQ6XZF7 1577 aa17.95■□□□□ 0.46
CCDC47-203ENST00000580986 SCAF1Q9H7N4 1312 aaKnown RBP17.95■□□□□ 0.46
CCDC47-203ENST00000580986 DMRT2Q9Y5R5 561 aa17.94■□□□□ 0.46
CCDC47-203ENST00000580986 URB2Q14146 1524 aaKnown RBP17.93■□□□□ 0.46
CCDC47-203ENST00000580986 TOPBP1Q92547 1522 aa17.9■□□□□ 0.46
CCDC47-203ENST00000580986 WRNQ14191 1432 aaPredicted RBP eCLIP17.89■□□□□ 0.46
CCDC47-203ENST00000580986 CUX2O14529 1486 aa17.88■□□□□ 0.45
CCDC47-203ENST00000580986 CUX1P39880 1505 aa17.88■□□□□ 0.45
CCDC47-203ENST00000580986 BIVM-ERCC5R4GMW8 1640 aa17.88■□□□□ 0.45
CCDC47-203ENST00000580986 TOP2BQ02880 1626 aa17.87■□□□□ 0.45
CCDC47-203ENST00000580986 SYNJ1O43426 1573 aa17.83■□□□□ 0.44
CCDC47-203ENST00000580986 POLA1P09884 1462 aaPredicted RBP17.77■□□□□ 0.44
CCDC47-203ENST00000580986 FGD5Q6ZNL6 1462 aa17.76■□□□□ 0.43
CCDC47-203ENST00000580986 IFT140Q96RY7 1462 aa17.73■□□□□ 0.43
CCDC47-203ENST00000580986 TARBP1Q13395 1621 aaKnown RBP17.72■□□□□ 0.43
CCDC47-203ENST00000580986 WDR97A6NE52 1622 aa17.7■□□□□ 0.42
CCDC47-203ENST00000580986 SOGA1O94964 1423 aa17.67■□□□□ 0.42
CCDC47-203ENST00000580986 ABCA10Q8WWZ4 1543 aa17.66■□□□□ 0.42
CCDC47-203ENST00000580986 RAD54L2Q9Y4B4 1467 aa17.62■□□□□ 0.41
CCDC47-203ENST00000580986 TRIM41Q8WV44 630 aa17.61■□□□□ 0.41
CCDC47-203ENST00000580986 ABCA5Q8WWZ7 1642 aa17.57■□□□□ 0.4
CCDC47-203ENST00000580986 EIF4G3O43432 1585 aaKnown RBP17.56■□□□□ 0.4
CCDC47-203ENST00000580986 ZNF608Q9ULD9 1512 aaPredicted RBP17.54■□□□□ 0.4
CCDC47-203ENST00000580986 KIF27Q86VH2 1401 aa17.51■□□□□ 0.39
CCDC47-203ENST00000580986 GAPVD1Q14C86 1478 aa17.5■□□□□ 0.39
CCDC47-203ENST00000580986 ERICH3Q5RHP9 1530 aa17.48■□□□□ 0.39
CCDC47-203ENST00000580986 TDRD9Q8NDG6 1382 aaKnown RBP17.48■□□□□ 0.39
CCDC47-203ENST00000580986 GRIN2BQ13224 1484 aa17.47■□□□□ 0.39
CCDC47-203ENST00000580986 PBRM1Q86U86 1689 aa17.47■□□□□ 0.39
CCDC47-203ENST00000580986 EEA1Q15075 1411 aa17.47■□□□□ 0.39
CCDC47-203ENST00000580986 AQRO60306 1485 aaKnown RBP eCLIP17.46■□□□□ 0.391e-8■■■■■ 36.7
CCDC47-203ENST00000580986 MAGI1Q96QZ7 1491 aaPredicted RBP17.43■□□□□ 0.38
CCDC47-203ENST00000580986 PPP4R3CPQ6ZMV5 832 aa17.41■□□□□ 0.38
CCDC47-203ENST00000580986 CUL7Q14999 1698 aa17.39■□□□□ 0.37
CCDC47-203ENST00000580986 IGF1RP08069 1367 aa17.36■□□□□ 0.37
CCDC47-203ENST00000580986 SNAPC4Q5SXM2 1469 aa17.36■□□□□ 0.37
CCDC47-203ENST00000580986 ADAMTS12P58397 1594 aa17.36■□□□□ 0.37
CCDC47-203ENST00000580986 RUSC2Q8N2Y8 1516 aa17.35■□□□□ 0.37
CCDC47-203ENST00000580986 FHAD1B1AJZ9 1412 aa17.33■□□□□ 0.36
CCDC47-203ENST00000580986 SYNJ2O15056 1496 aa17.32■□□□□ 0.36
CCDC47-203ENST00000580986 DCAF8L1A6NGE4 600 aa17.3■□□□□ 0.36
CCDC47-203ENST00000580986 PRXQ9BXM0 1461 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 1472.3 ms