RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 AEBP2Q6ZN18 517 aaPredicted RBP25.11■■□□□ 1.61
SS18-217ENST00000580958 NISCHQ9Y2I1 1504 aa23.96■■□□□ 1.43
SS18-217ENST00000580958 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
SS18-217ENST00000580958 SENP3Q9H4L4 574 aaPredicted RBP21.53■■□□□ 1.04
SS18-217ENST00000580958 PHF23Q9BUL5 403 aaPredicted RBP21.21■□□□□ 0.99
SS18-217ENST00000580958 CCDC180Q9P1Z9 1646 aa20.99■□□□□ 0.95
SS18-217ENST00000580958 ZCCHC6Q5VYS8 1495 aaKnown RBP20.13■□□□□ 0.81
SS18-217ENST00000580958 FOXD1Q16676 465 aa19.99■□□□□ 0.79
SS18-217ENST00000580958 ABCC9O60706 1549 aa19.81■□□□□ 0.76
SS18-217ENST00000580958 DCAF1Q9Y4B6 1507 aa19.8■□□□□ 0.76
SS18-217ENST00000580958 DCAF8L2P0C7V8 631 aa19.76■□□□□ 0.75
SS18-217ENST00000580958 MYO15BQ96JP2 1530 aa19.56■□□□□ 0.72
SS18-217ENST00000580958 SHROOM4Q9ULL8 1493 aa19.54■□□□□ 0.72
SS18-217ENST00000580958 NACADO15069 1562 aa19.49■□□□□ 0.71
SS18-217ENST00000580958 RB1CC1Q8TDY2 1594 aa19.34■□□□□ 0.69
SS18-217ENST00000580958 SCRIBQ14160 1630 aa19.29■□□□□ 0.68
SS18-217ENST00000580958 PLPPR3Q6T4P5 718 aa19.2■□□□□ 0.66
SS18-217ENST00000580958 UNC13AQ9UPW8 1703 aa19.09■□□□□ 0.65
SS18-217ENST00000580958 MSH5O43196 834 aa18.85■□□□□ 0.61
SS18-217ENST00000580958 BICRAQ9NZM4 1560 aa18.78■□□□□ 0.6
SS18-217ENST00000580958 PIAS4Q8N2W9 510 aaPredicted RBP18.76■□□□□ 0.59
SS18-217ENST00000580958 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
SS18-217ENST00000580958 PPP6R1Q9UPN7 881 aa18.67■□□□□ 0.58
SS18-217ENST00000580958 ADRA2BP18089 450 aa18.66■□□□□ 0.58
SS18-217ENST00000580958 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
SS18-217ENST00000580958 CECR2Q9BXF3 1484 aa18.63■□□□□ 0.57
SS18-217ENST00000580958 RSF1Q96T23 1441 aaPredicted RBP18.55■□□□□ 0.56
SS18-217ENST00000580958 MROH2BQ7Z745 1585 aa18.52■□□□□ 0.56
SS18-217ENST00000580958 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
SS18-217ENST00000580958 SMARCA4P51532 1647 aa18.48■□□□□ 0.55
SS18-217ENST00000580958 WIZO95785 1651 aa18.43■□□□□ 0.54
SS18-217ENST00000580958 POTEDQ86YR6 584 aa18.41■□□□□ 0.54
SS18-217ENST00000580958 PEG3Q9GZU2 1588 aa18.21■□□□□ 0.51
SS18-217ENST00000580958 EIF4G1Q04637 1599 aaKnown RBP18.2■□□□□ 0.5
SS18-217ENST00000580958 TOP2AP11388 1531 aaKnown RBP18.19■□□□□ 0.5
SS18-217ENST00000580958 SMARCA2P51531 1590 aa18.13■□□□□ 0.49
SS18-217ENST00000580958 ATAD2BQ9ULI0 1458 aa18.12■□□□□ 0.49
SS18-217ENST00000580958 BAZ1BQ9UIG0 1483 aaKnown RBP18.03■□□□□ 0.48
SS18-217ENST00000580958 CCDC88BA6NC98 1476 aa17.99■□□□□ 0.47
SS18-217ENST00000580958 HMGXB3Q12766 1538 aa17.97■□□□□ 0.47
SS18-217ENST00000580958 CC2D2AQ9P2K1 1620 aa17.96■□□□□ 0.47
SS18-217ENST00000580958 NCAPD3P42695 1498 aa17.95■□□□□ 0.46
SS18-217ENST00000580958 PRDM2Q13029 1718 aa17.64■□□□□ 0.41
SS18-217ENST00000580958 ABCC8Q09428 1581 aa17.64■□□□□ 0.41
SS18-217ENST00000580958 TRIM41Q8WV44 630 aa17.61■□□□□ 0.41
SS18-217ENST00000580958 CFTRP13569 1480 aa17.54■□□□□ 0.4
SS18-217ENST00000580958 CADPSQ9ULU8 1353 aa17.48■□□□□ 0.39
SS18-217ENST00000580958 WRNQ14191 1432 aaPredicted RBP eCLIP17.47■□□□□ 0.39
SS18-217ENST00000580958 SYNJ1O43426 1573 aa17.46■□□□□ 0.39
SS18-217ENST00000580958 DNAJC5BQ9UF47 199 aa17.45■□□□□ 0.38
SS18-217ENST00000580958 NESP48681 1621 aa17.39■□□□□ 0.38
SS18-217ENST00000580958 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.38
SS18-217ENST00000580958 LAMC3Q9Y6N6 1575 aa17.39■□□□□ 0.37
SS18-217ENST00000580958 TOP2BQ02880 1626 aa17.38■□□□□ 0.37
SS18-217ENST00000580958 CUX1P39880 1505 aa17.33■□□□□ 0.37
SS18-217ENST00000580958 FAM9AQ8IZU1 332 aaPredicted RBP17.32■□□□□ 0.36
SS18-217ENST00000580958 FANCD2Q9BXW9 1451 aa17.31■□□□□ 0.36
SS18-217ENST00000580958 KIF21AQ7Z4S6 1674 aa17.27■□□□□ 0.36
SS18-217ENST00000580958 SOGA1O94964 1423 aa17.25■□□□□ 0.35
SS18-217ENST00000580958 LOC105371045A0A1W2PR82 267 aa17.25■□□□□ 0.35
SS18-217ENST00000580958 CEP164Q9UPV0 1460 aa17.22■□□□□ 0.35
SS18-217ENST00000580958 RUSC2Q8N2Y8 1516 aa17.21■□□□□ 0.35
SS18-217ENST00000580958 PDS5BQ9NTI5 1447 aa17.21■□□□□ 0.34
SS18-217ENST00000580958 DNMBPQ6XZF7 1577 aa17.2■□□□□ 0.34
SS18-217ENST00000580958 EEA1Q15075 1411 aa17.19■□□□□ 0.34
SS18-217ENST00000580958 SCAF1Q9H7N4 1312 aaKnown RBP17.19■□□□□ 0.34
SS18-217ENST00000580958 TOPBP1Q92547 1522 aa17.15■□□□□ 0.34
SS18-217ENST00000580958 FGD5Q6ZNL6 1462 aa17.13■□□□□ 0.33
SS18-217ENST00000580958 URB2Q14146 1524 aaKnown RBP17.12■□□□□ 0.33
SS18-217ENST00000580958 MAPK8IP2Q13387 824 aaPredicted RBP17.11■□□□□ 0.33
SS18-217ENST00000580958 CSRNP3Q8WYN3 585 aa17.09■□□□□ 0.33
SS18-217ENST00000580958 EHMT2Q96KQ7 1210 aa17.09■□□□□ 0.33
SS18-217ENST00000580958 POLA1P09884 1462 aaPredicted RBP17.05■□□□□ 0.32
SS18-217ENST00000580958 KIF21BO75037 1637 aa17.04■□□□□ 0.32
SS18-217ENST00000580958 DMRT2Q9Y5R5 561 aa17.04■□□□□ 0.32
SS18-217ENST00000580958 MRC2Q9UBG0 1479 aa17.03■□□□□ 0.32
SS18-217ENST00000580958 WDR97A6NE52 1622 aa17.02■□□□□ 0.31
SS18-217ENST00000580958 KIF27Q86VH2 1401 aa17.02■□□□□ 0.31
SS18-217ENST00000580958 CUX2O14529 1486 aa17.01■□□□□ 0.31
SS18-217ENST00000580958 RAD54L2Q9Y4B4 1467 aa17■□□□□ 0.31
SS18-217ENST00000580958 GOLGA3Q08378 1498 aa16.99■□□□□ 0.31
SS18-217ENST00000580958 ERCC6Q03468 1493 aa16.98■□□□□ 0.31
SS18-217ENST00000580958 ABCA10Q8WWZ4 1543 aa16.97■□□□□ 0.31
SS18-217ENST00000580958 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
SS18-217ENST00000580958 WDR62O43379 1518 aa16.95■□□□□ 0.3
SS18-217ENST00000580958 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
SS18-217ENST00000580958 PRXQ9BXM0 1461 aa16.91■□□□□ 0.3
SS18-217ENST00000580958 RAPGEF2Q9Y4G8 1499 aa16.91■□□□□ 0.3
SS18-217ENST00000580958 ERICH3Q5RHP9 1530 aa16.91■□□□□ 0.3
SS18-217ENST00000580958 TNIKQ9UKE5 1360 aa16.89■□□□□ 0.3
SS18-217ENST00000580958 ABCA5Q8WWZ7 1642 aa16.88■□□□□ 0.29
SS18-217ENST00000580958 UBTFP17480 764 aaKnown RBP16.88■□□□□ 0.29
SS18-217ENST00000580958 IGF1RP08069 1367 aa16.86■□□□□ 0.29
SS18-217ENST00000580958 PBRM1Q86U86 1689 aa16.83■□□□□ 0.28
SS18-217ENST00000580958 CUL7Q14999 1698 aa16.82■□□□□ 0.28
SS18-217ENST00000580958 CEP162Q5TB80 1403 aa16.82■□□□□ 0.28
SS18-217ENST00000580958 TDRD9Q8NDG6 1382 aaKnown RBP16.8■□□□□ 0.28
SS18-217ENST00000580958 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
SS18-217ENST00000580958 GAPVD1Q14C86 1478 aa16.8■□□□□ 0.28
SS18-217ENST00000580958 IFT140Q96RY7 1462 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms