RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 NISCHQ9Y2I1 1504 aa37.07■■■■□ 3.53
SS18-216ENST00000580751 CCDC180Q9P1Z9 1646 aa32.87■■■□□ 2.85
SS18-216ENST00000580751 ABCC9O60706 1549 aa31.79■■■□□ 2.68
SS18-216ENST00000580751 ZCCHC6Q5VYS8 1495 aaKnown RBP30.97■■■□□ 2.55
SS18-216ENST00000580751 NACADO15069 1562 aa30.81■■■□□ 2.52
SS18-216ENST00000580751 DCAF8L2P0C7V8 631 aa30.77■■■□□ 2.52
SS18-216ENST00000580751 RB1CC1Q8TDY2 1594 aa30.77■■■□□ 2.52
SS18-216ENST00000580751 MYO15BQ96JP2 1530 aa30.75■■■□□ 2.51
SS18-216ENST00000580751 DCAF1Q9Y4B6 1507 aa30.73■■■□□ 2.51
SS18-216ENST00000580751 UNC13AQ9UPW8 1703 aa30.02■■■□□ 2.4
SS18-216ENST00000580751 SCRIBQ14160 1630 aa29.96■■■□□ 2.39
SS18-216ENST00000580751 BICRAQ9NZM4 1560 aa29.77■■■□□ 2.36
SS18-216ENST00000580751 PABPN1Q86U42 306 aaKnown RBP eCLIP29.71■■■□□ 2.35
SS18-216ENST00000580751 SHROOM4Q9ULL8 1493 aa29.6■■■□□ 2.33
SS18-216ENST00000580751 EIF4G1Q04637 1599 aaKnown RBP29■■■□□ 2.23
SS18-216ENST00000580751 CECR2Q9BXF3 1484 aa28.8■■■□□ 2.2
SS18-216ENST00000580751 DNAJC5BQ9UF47 199 aa28.8■■■□□ 2.2
SS18-216ENST00000580751 CC2D2AQ9P2K1 1620 aa28.79■■■□□ 2.2
SS18-216ENST00000580751 BAZ1AQ9NRL2 1556 aaPredicted RBP28.75■■■□□ 2.19
SS18-216ENST00000580751 SMARCA4P51532 1647 aa28.71■■■□□ 2.19
SS18-216ENST00000580751 MROH2BQ7Z745 1585 aa28.55■■■□□ 2.16
SS18-216ENST00000580751 SMARCA2P51531 1590 aa28.48■■■□□ 2.15
SS18-216ENST00000580751 ATAD2BQ9ULI0 1458 aa28.46■■■□□ 2.15
SS18-216ENST00000580751 PEG3Q9GZU2 1588 aa28.45■■■□□ 2.14
SS18-216ENST00000580751 NCAPD3P42695 1498 aa28.4■■■□□ 2.14
SS18-216ENST00000580751 RSF1Q96T23 1441 aaPredicted RBP28.35■■■□□ 2.13
SS18-216ENST00000580751 HMGXB3Q12766 1538 aa28.33■■■□□ 2.13
SS18-216ENST00000580751 BAZ1BQ9UIG0 1483 aaKnown RBP28.27■■■□□ 2.12
SS18-216ENST00000580751 WIZO95785 1651 aa28.26■■■□□ 2.11
SS18-216ENST00000580751 TOP2AP11388 1531 aaKnown RBP28.02■■■□□ 2.08
SS18-216ENST00000580751 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
SS18-216ENST00000580751 CCDC88BA6NC98 1476 aa27.65■■■□□ 2.02
SS18-216ENST00000580751 LAMC3Q9Y6N6 1575 aa27.63■■■□□ 2.01
SS18-216ENST00000580751 CADPSQ9ULU8 1353 aa27.59■■■□□ 2.01
SS18-216ENST00000580751 NESP48681 1621 aa27.58■■■□□ 2.01
SS18-216ENST00000580751 CFTRP13569 1480 aa27.5■■□□□ 1.99
SS18-216ENST00000580751 PDS5BQ9NTI5 1447 aa27.42■■□□□ 1.98
SS18-216ENST00000580751 ERCC6Q03468 1493 aa27.42■■□□□ 1.98
SS18-216ENST00000580751 PRDM2Q13029 1718 aa27.35■■□□□ 1.97
SS18-216ENST00000580751 KIF21AQ7Z4S6 1674 aa27.3■■□□□ 1.96
SS18-216ENST00000580751 FANCD2Q9BXW9 1451 aa27.28■■□□□ 1.96
SS18-216ENST00000580751 CEP164Q9UPV0 1460 aa27.24■■□□□ 1.95
SS18-216ENST00000580751 THOC2Q8NI27 1593 aaKnown RBP27.14■■□□□ 1.94
SS18-216ENST00000580751 MRC2Q9UBG0 1479 aa27.13■■□□□ 1.93
SS18-216ENST00000580751 WDR62O43379 1518 aa27.03■■□□□ 1.92
SS18-216ENST00000580751 CUX2O14529 1486 aa27.02■■□□□ 1.92
SS18-216ENST00000580751 URB2Q14146 1524 aaKnown RBP26.96■■□□□ 1.91
SS18-216ENST00000580751 ABCC8Q09428 1581 aa26.92■■□□□ 1.9
SS18-216ENST00000580751 DNMBPQ6XZF7 1577 aa26.89■■□□□ 1.9
SS18-216ENST00000580751 TOPBP1Q92547 1522 aa26.87■■□□□ 1.89
SS18-216ENST00000580751 CUX1P39880 1505 aa26.78■■□□□ 1.88
SS18-216ENST00000580751 WRNQ14191 1432 aaPredicted RBP eCLIP26.74■■□□□ 1.87
SS18-216ENST00000580751 POLA1P09884 1462 aaPredicted RBP26.67■■□□□ 1.86
SS18-216ENST00000580751 TOP2BQ02880 1626 aa26.66■■□□□ 1.86
SS18-216ENST00000580751 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
SS18-216ENST00000580751 FGD5Q6ZNL6 1462 aa26.65■■□□□ 1.86
SS18-216ENST00000580751 IFT140Q96RY7 1462 aa26.65■■□□□ 1.86
SS18-216ENST00000580751 SYNJ1O43426 1573 aa26.65■■□□□ 1.86
SS18-216ENST00000580751 TARBP1Q13395 1621 aaKnown RBP26.56■■□□□ 1.84
SS18-216ENST00000580751 SOGA1O94964 1423 aa26.55■■□□□ 1.84
SS18-216ENST00000580751 RAD54L2Q9Y4B4 1467 aa26.51■■□□□ 1.83
SS18-216ENST00000580751 ZNF608Q9ULD9 1512 aaPredicted RBP26.45■■□□□ 1.83
SS18-216ENST00000580751 WDR97A6NE52 1622 aa26.43■■□□□ 1.82
SS18-216ENST00000580751 ABCA10Q8WWZ4 1543 aa26.42■■□□□ 1.82
SS18-216ENST00000580751 EIF4G3O43432 1585 aaKnown RBP26.41■■□□□ 1.82
SS18-216ENST00000580751 TDRD9Q8NDG6 1382 aaKnown RBP26.34■■□□□ 1.81
SS18-216ENST00000580751 AQRO60306 1485 aaKnown RBP eCLIP26.34■■□□□ 1.815e-6■■■□□ 16.9
SS18-216ENST00000580751 TRIM41Q8WV44 630 aa26.3■■□□□ 1.8
SS18-216ENST00000580751 ABCA5Q8WWZ7 1642 aa26.29■■□□□ 1.8
SS18-216ENST00000580751 GAPVD1Q14C86 1478 aa26.27■■□□□ 1.8
SS18-216ENST00000580751 GRIN2BQ13224 1484 aa26.23■■□□□ 1.79
SS18-216ENST00000580751 PBRM1Q86U86 1689 aa26.2■■□□□ 1.78
SS18-216ENST00000580751 KIF27Q86VH2 1401 aa26.17■■□□□ 1.78
SS18-216ENST00000580751 CHIC1Q5VXU3 224 aa26.15■■□□□ 1.78
SS18-216ENST00000580751 MAGI1Q96QZ7 1491 aaPredicted RBP26.15■■□□□ 1.78
SS18-216ENST00000580751 SNAPC4Q5SXM2 1469 aa26.14■■□□□ 1.78
SS18-216ENST00000580751 ERICH3Q5RHP9 1530 aa26.13■■□□□ 1.77
SS18-216ENST00000580751 SYNJ2O15056 1496 aa26.03■■□□□ 1.76
SS18-216ENST00000580751 ADAMTS12P58397 1594 aa26.03■■□□□ 1.76
SS18-216ENST00000580751 CHD1O14646 1710 aa26■■□□□ 1.75
SS18-216ENST00000580751 FHAD1B1AJZ9 1412 aa25.98■■□□□ 1.75
SS18-216ENST00000580751 IGF1RP08069 1367 aa25.97■■□□□ 1.75
SS18-216ENST00000580751 CUL7Q14999 1698 aa25.96■■□□□ 1.75
SS18-216ENST00000580751 FBLN2P98095 1184 aa25.96■■□□□ 1.75
SS18-216ENST00000580751 CHMP7Q8WUX9 453 aaPredicted RBP25.96■■□□□ 1.75
SS18-216ENST00000580751 RUSC2Q8N2Y8 1516 aa25.95■■□□□ 1.74
SS18-216ENST00000580751 EEA1Q15075 1411 aa25.91■■□□□ 1.74
SS18-216ENST00000580751 OSCARQ8IYS5 282 aa25.91■■□□□ 1.74
SS18-216ENST00000580751 GRIN2AQ12879 1464 aa25.89■■□□□ 1.73
SS18-216ENST00000580751 CARMIL1Q5VZK9 1371 aa25.84■■□□□ 1.73
SS18-216ENST00000580751 NUP160Q12769 1436 aa25.76■■□□□ 1.71
SS18-216ENST00000580751 RAPGEF2Q9Y4G8 1499 aa25.75■■□□□ 1.71
SS18-216ENST00000580751 CSRNP3Q8WYN3 585 aa25.75■■□□□ 1.71
SS18-216ENST00000580751 DNAJC5Q9H3Z4 198 aa25.75■■□□□ 1.71
SS18-216ENST00000580751 CEP170Q5SW79 1584 aa25.73■■□□□ 1.71
SS18-216ENST00000580751 CLASP1Q7Z460 1538 aa25.73■■□□□ 1.71
SS18-216ENST00000580751 PRXQ9BXM0 1461 aa25.73■■□□□ 1.71
SS18-216ENST00000580751 FAM9AQ8IZU1 332 aaPredicted RBP25.7■■□□□ 1.7
SS18-216ENST00000580751 KIF21BO75037 1637 aa25.6■■□□□ 1.69
SS18-216ENST00000580751 KIAA0586Q9BVV6 1533 aa25.59■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms