RNA–Protein interactions for RNA: ENST00000577824.5

MKS1-206, Transcript of Meckel syndrome, type 1, humanhuman

TSL 5

Gene MKS1, Length 1,158 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-206ENST00000577824 NISCHQ9Y2I1 1504 aa30.52■■■□□ 2.48
MKS1-206ENST00000577824 CCDC180Q9P1Z9 1646 aa27.05■■□□□ 1.92
MKS1-206ENST00000577824 ABCC9O60706 1549 aa25.93■■□□□ 1.74
MKS1-206ENST00000577824 ZCCHC6Q5VYS8 1495 aaKnown RBP25.55■■□□□ 1.68
MKS1-206ENST00000577824 MYO15BQ96JP2 1530 aa25.37■■□□□ 1.65
MKS1-206ENST00000577824 DCAF1Q9Y4B6 1507 aa25.37■■□□□ 1.65
MKS1-206ENST00000577824 NACADO15069 1562 aa25.3■■□□□ 1.64
MKS1-206ENST00000577824 RB1CC1Q8TDY2 1594 aa25.22■■□□□ 1.63
MKS1-206ENST00000577824 DCAF8L2P0C7V8 631 aa25.01■■□□□ 1.59
MKS1-206ENST00000577824 UNC13AQ9UPW8 1703 aa24.66■■□□□ 1.54
MKS1-206ENST00000577824 SCRIBQ14160 1630 aa24.59■■□□□ 1.53
MKS1-206ENST00000577824 BICRAQ9NZM4 1560 aa24.47■■□□□ 1.51
MKS1-206ENST00000577824 SHROOM4Q9ULL8 1493 aa24.36■■□□□ 1.49
MKS1-206ENST00000577824 PABPN1Q86U42 306 aaKnown RBP eCLIP24.19■■□□□ 1.46
MKS1-206ENST00000577824 EIF4G1Q04637 1599 aaKnown RBP23.77■■□□□ 1.4
MKS1-206ENST00000577824 CECR2Q9BXF3 1484 aa23.67■■□□□ 1.38
MKS1-206ENST00000577824 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
MKS1-206ENST00000577824 SMARCA4P51532 1647 aa23.62■■□□□ 1.37
MKS1-206ENST00000577824 CC2D2AQ9P2K1 1620 aa23.55■■□□□ 1.36
MKS1-206ENST00000577824 MROH2BQ7Z745 1585 aa23.49■■□□□ 1.35
MKS1-206ENST00000577824 PEG3Q9GZU2 1588 aa23.47■■□□□ 1.35
MKS1-206ENST00000577824 DNAJC5BQ9UF47 199 aa23.42■■□□□ 1.34
MKS1-206ENST00000577824 SMARCA2P51531 1590 aa23.39■■□□□ 1.33
MKS1-206ENST00000577824 ATAD2BQ9ULI0 1458 aa23.36■■□□□ 1.33
MKS1-206ENST00000577824 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
MKS1-206ENST00000577824 NCAPD3P42695 1498 aa23.32■■□□□ 1.32
MKS1-206ENST00000577824 HMGXB3Q12766 1538 aa23.3■■□□□ 1.32
MKS1-206ENST00000577824 WIZO95785 1651 aa23.25■■□□□ 1.31
MKS1-206ENST00000577824 BAZ1BQ9UIG0 1483 aaKnown RBP23.17■■□□□ 1.3
MKS1-206ENST00000577824 TOP2AP11388 1531 aaKnown RBP23.08■■□□□ 1.29
MKS1-206ENST00000577824 SUPT5HO00267 1087 aaKnown RBP22.81■■□□□ 1.24
MKS1-206ENST00000577824 CCDC88BA6NC98 1476 aa22.74■■□□□ 1.23
MKS1-206ENST00000577824 LAMC3Q9Y6N6 1575 aa22.67■■□□□ 1.22
MKS1-206ENST00000577824 CADPSQ9ULU8 1353 aa22.61■■□□□ 1.21
MKS1-206ENST00000577824 CFTRP13569 1480 aa22.6■■□□□ 1.21
MKS1-206ENST00000577824 NESP48681 1621 aa22.57■■□□□ 1.2
MKS1-206ENST00000577824 PRDM2Q13029 1718 aa22.51■■□□□ 1.19
MKS1-206ENST00000577824 PDS5BQ9NTI5 1447 aa22.43■■□□□ 1.18
MKS1-206ENST00000577824 KIF21AQ7Z4S6 1674 aa22.37■■□□□ 1.17
MKS1-206ENST00000577824 FANCD2Q9BXW9 1451 aa22.35■■□□□ 1.17
MKS1-206ENST00000577824 ERCC6Q03468 1493 aa22.33■■□□□ 1.16
MKS1-206ENST00000577824 CEP164Q9UPV0 1460 aa22.31■■□□□ 1.16
MKS1-206ENST00000577824 THOC2Q8NI27 1593 aaKnown RBP22.28■■□□□ 1.16
MKS1-206ENST00000577824 MRC2Q9UBG0 1479 aa22.21■■□□□ 1.15
MKS1-206ENST00000577824 WDR62O43379 1518 aa22.18■■□□□ 1.14
MKS1-206ENST00000577824 URB2Q14146 1524 aaKnown RBP22.14■■□□□ 1.13
MKS1-206ENST00000577824 DNMBPQ6XZF7 1577 aa22.1■■□□□ 1.13
MKS1-206ENST00000577824 ABCC8Q09428 1581 aa22.09■■□□□ 1.13
MKS1-206ENST00000577824 CUX2O14529 1486 aa22.08■■□□□ 1.12
MKS1-206ENST00000577824 TOPBP1Q92547 1522 aa22.06■■□□□ 1.12
MKS1-206ENST00000577824 CUX1P39880 1505 aa22.03■■□□□ 1.12
MKS1-206ENST00000577824 BIVM-ERCC5R4GMW8 1640 aa21.99■■□□□ 1.11
MKS1-206ENST00000577824 WRNQ14191 1432 aaPredicted RBP eCLIP21.99■■□□□ 1.11
MKS1-206ENST00000577824 TOP2BQ02880 1626 aa21.98■■□□□ 1.11
MKS1-206ENST00000577824 SYNJ1O43426 1573 aa21.96■■□□□ 1.11
MKS1-206ENST00000577824 POLA1P09884 1462 aaPredicted RBP21.9■■□□□ 1.1
MKS1-206ENST00000577824 FGD5Q6ZNL6 1462 aa21.88■■□□□ 1.09
MKS1-206ENST00000577824 IFT140Q96RY7 1462 aa21.84■■□□□ 1.09
MKS1-206ENST00000577824 TARBP1Q13395 1621 aaKnown RBP21.84■■□□□ 1.09
MKS1-206ENST00000577824 WDR97A6NE52 1622 aa21.79■■□□□ 1.08
MKS1-206ENST00000577824 SOGA1O94964 1423 aa21.74■■□□□ 1.07
MKS1-206ENST00000577824 ABCA10Q8WWZ4 1543 aa21.74■■□□□ 1.07
MKS1-206ENST00000577824 RAD54L2Q9Y4B4 1467 aa21.73■■□□□ 1.07
MKS1-206ENST00000577824 EIF4G3O43432 1585 aaKnown RBP21.67■■□□□ 1.06
MKS1-206ENST00000577824 ZNF608Q9ULD9 1512 aaPredicted RBP21.67■■□□□ 1.06
MKS1-206ENST00000577824 ABCA5Q8WWZ7 1642 aa21.66■■□□□ 1.06
MKS1-206ENST00000577824 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
MKS1-206ENST00000577824 TRIM41Q8WV44 630 aa21.57■■□□□ 1.04
MKS1-206ENST00000577824 TDRD9Q8NDG6 1382 aaKnown RBP21.55■■□□□ 1.04
MKS1-206ENST00000577824 AQRO60306 1485 aaKnown RBP eCLIP21.54■■□□□ 1.04
MKS1-206ENST00000577824 AEBP2Q6ZN18 517 aaPredicted RBP21.54■■□□□ 1.04
MKS1-206ENST00000577824 GAPVD1Q14C86 1478 aa21.53■■□□□ 1.04
MKS1-206ENST00000577824 PBRM1Q86U86 1689 aa21.53■■□□□ 1.04
MKS1-206ENST00000577824 GRIN2BQ13224 1484 aa21.51■■□□□ 1.03
MKS1-206ENST00000577824 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
MKS1-206ENST00000577824 KIF27Q86VH2 1401 aa21.49■■□□□ 1.03
MKS1-206ENST00000577824 MAGI1Q96QZ7 1491 aaPredicted RBP21.45■■□□□ 1.03
MKS1-206ENST00000577824 SNAPC4Q5SXM2 1469 aa21.42■■□□□ 1.02
MKS1-206ENST00000577824 ADAMTS12P58397 1594 aa21.4■■□□□ 1.02
MKS1-206ENST00000577824 EEA1Q15075 1411 aa21.38■■□□□ 1.01
MKS1-206ENST00000577824 CUL7Q14999 1698 aa21.37■■□□□ 1.01
MKS1-206ENST00000577824 RUSC2Q8N2Y8 1516 aa21.37■■□□□ 1.01
MKS1-206ENST00000577824 IGF1RP08069 1367 aa21.36■■□□□ 1.01
MKS1-206ENST00000577824 SYNJ2O15056 1496 aa21.34■■□□□ 1.01
MKS1-206ENST00000577824 FHAD1B1AJZ9 1412 aa21.32■■□□□ 1
MKS1-206ENST00000577824 CHD1O14646 1710 aa21.28■■□□□ 1
MKS1-206ENST00000577824 GRIN2AQ12879 1464 aa21.24■□□□□ 0.99
MKS1-206ENST00000577824 PRXQ9BXM0 1461 aa21.24■□□□□ 0.99
MKS1-206ENST00000577824 CARMIL1Q5VZK9 1371 aa21.21■□□□□ 0.99
MKS1-206ENST00000577824 RAPGEF2Q9Y4G8 1499 aa21.17■□□□□ 0.98
MKS1-206ENST00000577824 KIF21BO75037 1637 aa21.16■□□□□ 0.98
MKS1-206ENST00000577824 NUP160Q12769 1436 aa21.16■□□□□ 0.98
MKS1-206ENST00000577824 CSRNP3Q8WYN3 585 aa21.16■□□□□ 0.98
MKS1-206ENST00000577824 CHMP7Q8WUX9 453 aaPredicted RBP21.15■□□□□ 0.98
MKS1-206ENST00000577824 CEP170Q5SW79 1584 aa21.14■□□□□ 0.97
MKS1-206ENST00000577824 CLASP1Q7Z460 1538 aa21.13■□□□□ 0.97
MKS1-206ENST00000577824 FBLN2P98095 1184 aa21.08■□□□□ 0.97
MKS1-206ENST00000577824 OSCARQ8IYS5 282 aa21.05■□□□□ 0.96
MKS1-206ENST00000577824 FAM9AQ8IZU1 332 aaPredicted RBP21.03■□□□□ 0.96
MKS1-206ENST00000577824 KIAA0586Q9BVV6 1533 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms