RNA–Protein interactions for RNA: ENST00000575711.1

RPAIN-217, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 732 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-217ENST00000575711 NISCHQ9Y2I1 1504 aa33.31■■■□□ 2.92
RPAIN-217ENST00000575711 CCDC180Q9P1Z9 1646 aa29.45■■■□□ 2.31
RPAIN-217ENST00000575711 ABCC9O60706 1549 aa28.55■■■□□ 2.16
RPAIN-217ENST00000575711 ZCCHC6Q5VYS8 1495 aaKnown RBP27.82■■■□□ 2.04
RPAIN-217ENST00000575711 DCAF8L2P0C7V8 631 aa27.75■■■□□ 2.03
RPAIN-217ENST00000575711 NACADO15069 1562 aa27.65■■■□□ 2.02
RPAIN-217ENST00000575711 RB1CC1Q8TDY2 1594 aa27.6■■■□□ 2.01
RPAIN-217ENST00000575711 MYO15BQ96JP2 1530 aa27.57■■■□□ 2
RPAIN-217ENST00000575711 DCAF1Q9Y4B6 1507 aa27.57■■■□□ 2
RPAIN-217ENST00000575711 SCRIBQ14160 1630 aa26.92■■□□□ 1.9
RPAIN-217ENST00000575711 UNC13AQ9UPW8 1703 aa26.9■■□□□ 1.9
RPAIN-217ENST00000575711 PABPN1Q86U42 306 aaKnown RBP eCLIP26.75■■□□□ 1.87
RPAIN-217ENST00000575711 BICRAQ9NZM4 1560 aa26.71■■□□□ 1.87
RPAIN-217ENST00000575711 SHROOM4Q9ULL8 1493 aa26.54■■□□□ 1.84
RPAIN-217ENST00000575711 EIF4G1Q04637 1599 aaKnown RBP26.01■■□□□ 1.75
RPAIN-217ENST00000575711 CECR2Q9BXF3 1484 aa25.91■■□□□ 1.74
RPAIN-217ENST00000575711 DNAJC5BQ9UF47 199 aa25.88■■□□□ 1.73
RPAIN-217ENST00000575711 CC2D2AQ9P2K1 1620 aa25.82■■□□□ 1.72
RPAIN-217ENST00000575711 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
RPAIN-217ENST00000575711 SMARCA4P51532 1647 aa25.77■■□□□ 1.72
RPAIN-217ENST00000575711 AEBP2Q6ZN18 517 aaPredicted RBP25.69■■□□□ 1.7
RPAIN-217ENST00000575711 MROH2BQ7Z745 1585 aa25.67■■□□□ 1.7
RPAIN-217ENST00000575711 ATAD2BQ9ULI0 1458 aa25.57■■□□□ 1.68
RPAIN-217ENST00000575711 SMARCA2P51531 1590 aa25.56■■□□□ 1.68
RPAIN-217ENST00000575711 NCAPD3P42695 1498 aa25.51■■□□□ 1.67
RPAIN-217ENST00000575711 PEG3Q9GZU2 1588 aa25.51■■□□□ 1.67
RPAIN-217ENST00000575711 RSF1Q96T23 1441 aaPredicted RBP25.5■■□□□ 1.67
RPAIN-217ENST00000575711 HMGXB3Q12766 1538 aa25.41■■□□□ 1.66
RPAIN-217ENST00000575711 WIZO95785 1651 aa25.4■■□□□ 1.66
RPAIN-217ENST00000575711 BAZ1BQ9UIG0 1483 aaKnown RBP25.39■■□□□ 1.65
RPAIN-217ENST00000575711 TOP2AP11388 1531 aaKnown RBP25.17■■□□□ 1.62
RPAIN-217ENST00000575711 SUPT5HO00267 1087 aaKnown RBP25.13■■□□□ 1.61
RPAIN-217ENST00000575711 CCDC88BA6NC98 1476 aa24.88■■□□□ 1.57
RPAIN-217ENST00000575711 CADPSQ9ULU8 1353 aa24.8■■□□□ 1.56
RPAIN-217ENST00000575711 LAMC3Q9Y6N6 1575 aa24.78■■□□□ 1.56
RPAIN-217ENST00000575711 NESP48681 1621 aa24.78■■□□□ 1.56
RPAIN-217ENST00000575711 CFTRP13569 1480 aa24.7■■□□□ 1.55
RPAIN-217ENST00000575711 PDS5BQ9NTI5 1447 aa24.63■■□□□ 1.53
RPAIN-217ENST00000575711 ERCC6Q03468 1493 aa24.61■■□□□ 1.53
RPAIN-217ENST00000575711 FANCD2Q9BXW9 1451 aa24.51■■□□□ 1.51
RPAIN-217ENST00000575711 PRDM2Q13029 1718 aa24.49■■□□□ 1.51
RPAIN-217ENST00000575711 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
RPAIN-217ENST00000575711 CEP164Q9UPV0 1460 aa24.45■■□□□ 1.51
RPAIN-217ENST00000575711 MRC2Q9UBG0 1479 aa24.35■■□□□ 1.49
RPAIN-217ENST00000575711 THOC2Q8NI27 1593 aaKnown RBP24.33■■□□□ 1.48
RPAIN-217ENST00000575711 WDR62O43379 1518 aa24.25■■□□□ 1.47
RPAIN-217ENST00000575711 URB2Q14146 1524 aaKnown RBP24.22■■□□□ 1.47
RPAIN-217ENST00000575711 CUX2O14529 1486 aa24.22■■□□□ 1.47
RPAIN-217ENST00000575711 ABCC8Q09428 1581 aa24.17■■□□□ 1.46
RPAIN-217ENST00000575711 DNMBPQ6XZF7 1577 aa24.14■■□□□ 1.45
RPAIN-217ENST00000575711 TOPBP1Q92547 1522 aa24.14■■□□□ 1.45
RPAIN-217ENST00000575711 CUX1P39880 1505 aa24.07■■□□□ 1.44
RPAIN-217ENST00000575711 WRNQ14191 1432 aaPredicted RBP eCLIP24.06■■□□□ 1.44
RPAIN-217ENST00000575711 POLA1P09884 1462 aaPredicted RBP23.96■■□□□ 1.43
RPAIN-217ENST00000575711 FGD5Q6ZNL6 1462 aa23.95■■□□□ 1.42
RPAIN-217ENST00000575711 TOP2BQ02880 1626 aa23.95■■□□□ 1.42
RPAIN-217ENST00000575711 SYNJ1O43426 1573 aa23.95■■□□□ 1.42
RPAIN-217ENST00000575711 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
RPAIN-217ENST00000575711 IFT140Q96RY7 1462 aa23.93■■□□□ 1.42
RPAIN-217ENST00000575711 BIVM-ERCC5R4GMW8 1640 aa23.92■■□□□ 1.42
RPAIN-217ENST00000575711 SOGA1O94964 1423 aa23.88■■□□□ 1.41
RPAIN-217ENST00000575711 RAD54L2Q9Y4B4 1467 aa23.85■■□□□ 1.41
RPAIN-217ENST00000575711 TARBP1Q13395 1621 aaKnown RBP23.82■■□□□ 1.4
RPAIN-217ENST00000575711 ZNF608Q9ULD9 1512 aaPredicted RBP23.77■■□□□ 1.4
RPAIN-217ENST00000575711 ABCA10Q8WWZ4 1543 aa23.74■■□□□ 1.39
RPAIN-217ENST00000575711 TRIM41Q8WV44 630 aa23.73■■□□□ 1.39
RPAIN-217ENST00000575711 TDRD9Q8NDG6 1382 aaKnown RBP23.7■■□□□ 1.38
RPAIN-217ENST00000575711 WDR97A6NE52 1622 aa23.7■■□□□ 1.38
RPAIN-217ENST00000575711 EIF4G3O43432 1585 aaKnown RBP23.69■■□□□ 1.38
RPAIN-217ENST00000575711 AQRO60306 1485 aaKnown RBP eCLIP23.68■■□□□ 1.384e-7■■■□□ 19.1
RPAIN-217ENST00000575711 GAPVD1Q14C86 1478 aa23.61■■□□□ 1.37
RPAIN-217ENST00000575711 ABCA5Q8WWZ7 1642 aa23.59■■□□□ 1.37
RPAIN-217ENST00000575711 GRIN2BQ13224 1484 aa23.56■■□□□ 1.36
RPAIN-217ENST00000575711 KIF27Q86VH2 1401 aa23.54■■□□□ 1.36
RPAIN-217ENST00000575711 PBRM1Q86U86 1689 aa23.5■■□□□ 1.35
RPAIN-217ENST00000575711 SNAPC4Q5SXM2 1469 aa23.49■■□□□ 1.35
RPAIN-217ENST00000575711 MAGI1Q96QZ7 1491 aaPredicted RBP23.47■■□□□ 1.35
RPAIN-217ENST00000575711 ERICH3Q5RHP9 1530 aa23.46■■□□□ 1.35
RPAIN-217ENST00000575711 IGF1RP08069 1367 aa23.39■■□□□ 1.33
RPAIN-217ENST00000575711 RUSC2Q8N2Y8 1516 aa23.38■■□□□ 1.33
RPAIN-217ENST00000575711 FBLN2P98095 1184 aa23.38■■□□□ 1.33
RPAIN-217ENST00000575711 SYNJ2O15056 1496 aa23.36■■□□□ 1.33
RPAIN-217ENST00000575711 CHMP7Q8WUX9 453 aaPredicted RBP23.36■■□□□ 1.33
RPAIN-217ENST00000575711 ADAMTS12P58397 1594 aa23.35■■□□□ 1.33
RPAIN-217ENST00000575711 FHAD1B1AJZ9 1412 aa23.35■■□□□ 1.33
RPAIN-217ENST00000575711 EEA1Q15075 1411 aa23.31■■□□□ 1.32
RPAIN-217ENST00000575711 CUL7Q14999 1698 aa23.3■■□□□ 1.32
RPAIN-217ENST00000575711 CHD1O14646 1710 aa23.3■■□□□ 1.32
RPAIN-217ENST00000575711 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
RPAIN-217ENST00000575711 CARMIL1Q5VZK9 1371 aa23.27■■□□□ 1.31
RPAIN-217ENST00000575711 GRIN2AQ12879 1464 aa23.25■■□□□ 1.31
RPAIN-217ENST00000575711 FAM9AQ8IZU1 332 aaPredicted RBP23.23■■□□□ 1.31
RPAIN-217ENST00000575711 CSRNP3Q8WYN3 585 aa23.23■■□□□ 1.31
RPAIN-217ENST00000575711 RAPGEF2Q9Y4G8 1499 aa23.17■■□□□ 1.3
RPAIN-217ENST00000575711 PRXQ9BXM0 1461 aa23.15■■□□□ 1.3
RPAIN-217ENST00000575711 NUP160Q12769 1436 aa23.14■■□□□ 1.29
RPAIN-217ENST00000575711 CEP170Q5SW79 1584 aa23.1■■□□□ 1.29
RPAIN-217ENST00000575711 DNAJC5Q9H3Z4 198 aa23.09■■□□□ 1.29
RPAIN-217ENST00000575711 CLASP1Q7Z460 1538 aa23.08■■□□□ 1.29
RPAIN-217ENST00000575711 KIF21BO75037 1637 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms