RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 NISCHQ9Y2I1 1504 aa22.94■■□□□ 1.26
CCDC40-214ENST00000575431 CCDC180Q9P1Z9 1646 aa20.38■□□□□ 0.85
CCDC40-214ENST00000575431 ABCC9O60706 1549 aa19.74■□□□□ 0.75
CCDC40-214ENST00000575431 NACADO15069 1562 aa19.14■□□□□ 0.65
CCDC40-214ENST00000575431 ZCCHC6Q5VYS8 1495 aaKnown RBP19.13■□□□□ 0.65
CCDC40-214ENST00000575431 RB1CC1Q8TDY2 1594 aa19.12■□□□□ 0.65
CCDC40-214ENST00000575431 MYO15BQ96JP2 1530 aa19.1■□□□□ 0.65
CCDC40-214ENST00000575431 DCAF8L2P0C7V8 631 aa19.09■□□□□ 0.65
CCDC40-214ENST00000575431 DCAF1Q9Y4B6 1507 aa19.04■□□□□ 0.64
CCDC40-214ENST00000575431 UNC13AQ9UPW8 1703 aa18.63■□□□□ 0.57
CCDC40-214ENST00000575431 SCRIBQ14160 1630 aa18.52■□□□□ 0.55
CCDC40-214ENST00000575431 BICRAQ9NZM4 1560 aa18.47■□□□□ 0.55
CCDC40-214ENST00000575431 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
CCDC40-214ENST00000575431 SHROOM4Q9ULL8 1493 aa18.4■□□□□ 0.54
CCDC40-214ENST00000575431 EIF4G1Q04637 1599 aaKnown RBP18■□□□□ 0.47
CCDC40-214ENST00000575431 DNAJC5BQ9UF47 199 aa17.97■□□□□ 0.47
CCDC40-214ENST00000575431 CC2D2AQ9P2K1 1620 aa17.89■□□□□ 0.45
CCDC40-214ENST00000575431 CECR2Q9BXF3 1484 aa17.81■□□□□ 0.44
CCDC40-214ENST00000575431 BAZ1AQ9NRL2 1556 aaPredicted RBP17.8■□□□□ 0.44
CCDC40-214ENST00000575431 SMARCA4P51532 1647 aa17.76■□□□□ 0.43
CCDC40-214ENST00000575431 SMARCA2P51531 1590 aa17.67■□□□□ 0.42
CCDC40-214ENST00000575431 MROH2BQ7Z745 1585 aa17.65■□□□□ 0.42
CCDC40-214ENST00000575431 NCAPD3P42695 1498 aa17.64■□□□□ 0.41
CCDC40-214ENST00000575431 ATAD2BQ9ULI0 1458 aa17.64■□□□□ 0.41
CCDC40-214ENST00000575431 PEG3Q9GZU2 1588 aa17.62■□□□□ 0.41
CCDC40-214ENST00000575431 HMGXB3Q12766 1538 aa17.57■□□□□ 0.4
CCDC40-214ENST00000575431 BAZ1BQ9UIG0 1483 aaKnown RBP17.51■□□□□ 0.39
CCDC40-214ENST00000575431 RSF1Q96T23 1441 aaPredicted RBP17.5■□□□□ 0.39
CCDC40-214ENST00000575431 WIZO95785 1651 aa17.45■□□□□ 0.38
CCDC40-214ENST00000575431 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
CCDC40-214ENST00000575431 LAMC3Q9Y6N6 1575 aa17.17■□□□□ 0.34
CCDC40-214ENST00000575431 SUPT5HO00267 1087 aaKnown RBP17.13■□□□□ 0.33
CCDC40-214ENST00000575431 CADPSQ9ULU8 1353 aa17.13■□□□□ 0.33
CCDC40-214ENST00000575431 NESP48681 1621 aa17.1■□□□□ 0.33
CCDC40-214ENST00000575431 CCDC88BA6NC98 1476 aa17.09■□□□□ 0.33
CCDC40-214ENST00000575431 PDS5BQ9NTI5 1447 aa17.05■□□□□ 0.32
CCDC40-214ENST00000575431 CFTRP13569 1480 aa17.05■□□□□ 0.32
CCDC40-214ENST00000575431 ERCC6Q03468 1493 aa17.05■□□□□ 0.32
CCDC40-214ENST00000575431 PRDM2Q13029 1718 aa16.94■□□□□ 0.3
CCDC40-214ENST00000575431 KIF21AQ7Z4S6 1674 aa16.92■□□□□ 0.3
CCDC40-214ENST00000575431 FANCD2Q9BXW9 1451 aa16.91■□□□□ 0.3
CCDC40-214ENST00000575431 CEP164Q9UPV0 1460 aa16.89■□□□□ 0.29
CCDC40-214ENST00000575431 CUX2O14529 1486 aa16.86■□□□□ 0.29
CCDC40-214ENST00000575431 THOC2Q8NI27 1593 aaKnown RBP16.85■□□□□ 0.29
CCDC40-214ENST00000575431 MRC2Q9UBG0 1479 aa16.84■□□□□ 0.29
CCDC40-214ENST00000575431 WDR62O43379 1518 aa16.78■□□□□ 0.28
CCDC40-214ENST00000575431 ABCC8Q09428 1581 aa16.75■□□□□ 0.27
CCDC40-214ENST00000575431 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
CCDC40-214ENST00000575431 DNMBPQ6XZF7 1577 aa16.66■□□□□ 0.26
CCDC40-214ENST00000575431 TOPBP1Q92547 1522 aa16.65■□□□□ 0.26
CCDC40-214ENST00000575431 IFT140Q96RY7 1462 aa16.55■□□□□ 0.24
CCDC40-214ENST00000575431 CUX1P39880 1505 aa16.55■□□□□ 0.24
CCDC40-214ENST00000575431 WRNQ14191 1432 aaPredicted RBP eCLIP16.53■□□□□ 0.24
CCDC40-214ENST00000575431 POLA1P09884 1462 aaPredicted RBP16.51■□□□□ 0.23
CCDC40-214ENST00000575431 FGD5Q6ZNL6 1462 aa16.49■□□□□ 0.23
CCDC40-214ENST00000575431 TOP2BQ02880 1626 aa16.48■□□□□ 0.23
CCDC40-214ENST00000575431 BIVM-ERCC5R4GMW8 1640 aa16.48■□□□□ 0.23
CCDC40-214ENST00000575431 SOGA1O94964 1423 aa16.47■□□□□ 0.23
CCDC40-214ENST00000575431 TARBP1Q13395 1621 aaKnown RBP16.45■□□□□ 0.22
CCDC40-214ENST00000575431 SYNJ1O43426 1573 aa16.43■□□□□ 0.22
CCDC40-214ENST00000575431 WDR97A6NE52 1622 aa16.41■□□□□ 0.22
CCDC40-214ENST00000575431 RAD54L2Q9Y4B4 1467 aa16.41■□□□□ 0.22
CCDC40-214ENST00000575431 ZNF608Q9ULD9 1512 aaPredicted RBP16.39■□□□□ 0.21
CCDC40-214ENST00000575431 ABCA10Q8WWZ4 1543 aa16.36■□□□□ 0.21
CCDC40-214ENST00000575431 EIF4G3O43432 1585 aaKnown RBP16.36■□□□□ 0.21
CCDC40-214ENST00000575431 TDRD9Q8NDG6 1382 aaKnown RBP16.33■□□□□ 0.2
CCDC40-214ENST00000575431 AQRO60306 1485 aaKnown RBP eCLIP16.33■□□□□ 0.2
CCDC40-214ENST00000575431 GRIN2BQ13224 1484 aa16.28■□□□□ 0.2
CCDC40-214ENST00000575431 GAPVD1Q14C86 1478 aa16.28■□□□□ 0.2
CCDC40-214ENST00000575431 ABCA5Q8WWZ7 1642 aa16.27■□□□□ 0.2
CCDC40-214ENST00000575431 MAGI1Q96QZ7 1491 aaPredicted RBP16.23■□□□□ 0.19
CCDC40-214ENST00000575431 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
CCDC40-214ENST00000575431 PBRM1Q86U86 1689 aa16.22■□□□□ 0.19
CCDC40-214ENST00000575431 KIF27Q86VH2 1401 aa16.19■□□□□ 0.18
CCDC40-214ENST00000575431 SNAPC4Q5SXM2 1469 aa16.19■□□□□ 0.18
CCDC40-214ENST00000575431 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
CCDC40-214ENST00000575431 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
CCDC40-214ENST00000575431 DNAJC5Q9H3Z4 198 aa16.18■□□□□ 0.18
CCDC40-214ENST00000575431 SYNJ2O15056 1496 aa16.15■□□□□ 0.18
CCDC40-214ENST00000575431 CHMP7Q8WUX9 453 aaPredicted RBP16.14■□□□□ 0.17
CCDC40-214ENST00000575431 FBLN2P98095 1184 aa16.13■□□□□ 0.17
CCDC40-214ENST00000575431 CHD1O14646 1710 aa16.13■□□□□ 0.17
CCDC40-214ENST00000575431 FHAD1B1AJZ9 1412 aa16.11■□□□□ 0.17
CCDC40-214ENST00000575431 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
CCDC40-214ENST00000575431 IGF1RP08069 1367 aa16.08■□□□□ 0.16
CCDC40-214ENST00000575431 CHIC1Q5VXU3 224 aa16.07■□□□□ 0.16
CCDC40-214ENST00000575431 CUL7Q14999 1698 aa16.07■□□□□ 0.16
CCDC40-214ENST00000575431 GRIN2AQ12879 1464 aa16.04■□□□□ 0.16
CCDC40-214ENST00000575431 EEA1Q15075 1411 aa16.01■□□□□ 0.15
CCDC40-214ENST00000575431 CARMIL1Q5VZK9 1371 aa16■□□□□ 0.15
CCDC40-214ENST00000575431 RUSC2Q8N2Y8 1516 aa15.99■□□□□ 0.15
CCDC40-214ENST00000575431 NUP160Q12769 1436 aa15.97■□□□□ 0.15
CCDC40-214ENST00000575431 CLASP1Q7Z460 1538 aa15.96■□□□□ 0.15
CCDC40-214ENST00000575431 CEP170Q5SW79 1584 aa15.93■□□□□ 0.14
CCDC40-214ENST00000575431 RAPGEF2Q9Y4G8 1499 aa15.93■□□□□ 0.14
CCDC40-214ENST00000575431 CSRNP3Q8WYN3 585 aa15.93■□□□□ 0.14
CCDC40-214ENST00000575431 PRXQ9BXM0 1461 aa15.89■□□□□ 0.13
CCDC40-214ENST00000575431 KIAA0586Q9BVV6 1533 aa15.88■□□□□ 0.13
CCDC40-214ENST00000575431 ARHGEF11O15085 1522 aa15.87■□□□□ 0.13
CCDC40-214ENST00000575431 RIMBP3CA6NJZ7 1639 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms