RNA–Protein interactions for RNA: ENST00000574121.1

CCNE1-204, Transcript of cyclin E1, humanhuman

TSL 2

Gene CCNE1, Length 1,295 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNE1-204ENST00000574121 NISCHQ9Y2I1 1504 aa37.56■■■■□ 3.6
CCNE1-204ENST00000574121 CCDC180Q9P1Z9 1646 aa33.25■■■□□ 2.91
CCNE1-204ENST00000574121 ABCC9O60706 1549 aa32.16■■■□□ 2.74
CCNE1-204ENST00000574121 ZCCHC6Q5VYS8 1495 aaKnown RBP31.38■■■□□ 2.61
CCNE1-204ENST00000574121 NACADO15069 1562 aa31.22■■■□□ 2.59
CCNE1-204ENST00000574121 MYO15BQ96JP2 1530 aa31.2■■■□□ 2.59
CCNE1-204ENST00000574121 DCAF8L2P0C7V8 631 aa31.17■■■□□ 2.58
CCNE1-204ENST00000574121 DCAF1Q9Y4B6 1507 aa31.17■■■□□ 2.58
CCNE1-204ENST00000574121 RB1CC1Q8TDY2 1594 aa31.14■■■□□ 2.58
CCNE1-204ENST00000574121 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
CCNE1-204ENST00000574121 SCRIBQ14160 1630 aa30.29■■■□□ 2.44
CCNE1-204ENST00000574121 BICRAQ9NZM4 1560 aa30.14■■■□□ 2.42
CCNE1-204ENST00000574121 PABPN1Q86U42 306 aaKnown RBP eCLIP30.09■■■□□ 2.41
CCNE1-204ENST00000574121 SHROOM4Q9ULL8 1493 aa30■■■□□ 2.39
CCNE1-204ENST00000574121 EIF4G1Q04637 1599 aaKnown RBP29.34■■■□□ 2.29
CCNE1-204ENST00000574121 DNAJC5BQ9UF47 199 aa29.19■■■□□ 2.26
CCNE1-204ENST00000574121 CECR2Q9BXF3 1484 aa29.17■■■□□ 2.26
CCNE1-204ENST00000574121 BAZ1AQ9NRL2 1556 aaPredicted RBP29.12■■■□□ 2.25
CCNE1-204ENST00000574121 CC2D2AQ9P2K1 1620 aa29.11■■■□□ 2.25
CCNE1-204ENST00000574121 SMARCA4P51532 1647 aa29.05■■■□□ 2.24
CCNE1-204ENST00000574121 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
CCNE1-204ENST00000574121 SMARCA2P51531 1590 aa28.84■■■□□ 2.21
CCNE1-204ENST00000574121 ATAD2BQ9ULI0 1458 aa28.84■■■□□ 2.21
CCNE1-204ENST00000574121 PEG3Q9GZU2 1588 aa28.83■■■□□ 2.21
CCNE1-204ENST00000574121 NCAPD3P42695 1498 aa28.81■■■□□ 2.2
CCNE1-204ENST00000574121 RSF1Q96T23 1441 aaPredicted RBP28.75■■■□□ 2.19
CCNE1-204ENST00000574121 HMGXB3Q12766 1538 aa28.69■■■□□ 2.18
CCNE1-204ENST00000574121 BAZ1BQ9UIG0 1483 aaKnown RBP28.62■■■□□ 2.17
CCNE1-204ENST00000574121 WIZO95785 1651 aa28.58■■■□□ 2.16
CCNE1-204ENST00000574121 TOP2AP11388 1531 aaKnown RBP28.38■■■□□ 2.13
CCNE1-204ENST00000574121 SUPT5HO00267 1087 aaKnown RBP28.2■■■□□ 2.1
CCNE1-204ENST00000574121 CCDC88BA6NC98 1476 aa28.02■■■□□ 2.08
CCNE1-204ENST00000574121 CADPSQ9ULU8 1353 aa27.98■■■□□ 2.07
CCNE1-204ENST00000574121 LAMC3Q9Y6N6 1575 aa27.97■■■□□ 2.07
CCNE1-204ENST00000574121 NESP48681 1621 aa27.91■■■□□ 2.06
CCNE1-204ENST00000574121 CFTRP13569 1480 aa27.89■■■□□ 2.05
CCNE1-204ENST00000574121 PDS5BQ9NTI5 1447 aa27.8■■■□□ 2.04
CCNE1-204ENST00000574121 ERCC6Q03468 1493 aa27.73■■■□□ 2.03
CCNE1-204ENST00000574121 FANCD2Q9BXW9 1451 aa27.63■■■□□ 2.01
CCNE1-204ENST00000574121 PRDM2Q13029 1718 aa27.61■■■□□ 2.01
CCNE1-204ENST00000574121 CEP164Q9UPV0 1460 aa27.57■■■□□ 2
CCNE1-204ENST00000574121 KIF21AQ7Z4S6 1674 aa27.56■■■□□ 2
CCNE1-204ENST00000574121 MRC2Q9UBG0 1479 aa27.46■■□□□ 1.99
CCNE1-204ENST00000574121 THOC2Q8NI27 1593 aaKnown RBP27.44■■□□□ 1.98
CCNE1-204ENST00000574121 CUX2O14529 1486 aa27.37■■□□□ 1.97
CCNE1-204ENST00000574121 WDR62O43379 1518 aa27.36■■□□□ 1.97
CCNE1-204ENST00000574121 URB2Q14146 1524 aaKnown RBP27.31■■□□□ 1.96
CCNE1-204ENST00000574121 ABCC8Q09428 1581 aa27.31■■□□□ 1.96
CCNE1-204ENST00000574121 DNMBPQ6XZF7 1577 aa27.22■■□□□ 1.95
CCNE1-204ENST00000574121 TOPBP1Q92547 1522 aa27.21■■□□□ 1.95
CCNE1-204ENST00000574121 CUX1P39880 1505 aa27.11■■□□□ 1.93
CCNE1-204ENST00000574121 WRNQ14191 1432 aaPredicted RBP eCLIP27.11■■□□□ 1.93
CCNE1-204ENST00000574121 POLA1P09884 1462 aaPredicted RBP27.01■■□□□ 1.91
CCNE1-204ENST00000574121 IFT140Q96RY7 1462 aa27■■□□□ 1.91
CCNE1-204ENST00000574121 TOP2BQ02880 1626 aa26.99■■□□□ 1.91
CCNE1-204ENST00000574121 FGD5Q6ZNL6 1462 aa26.99■■□□□ 1.91
CCNE1-204ENST00000574121 BIVM-ERCC5R4GMW8 1640 aa26.97■■□□□ 1.91
CCNE1-204ENST00000574121 SYNJ1O43426 1573 aa26.96■■□□□ 1.91
CCNE1-204ENST00000574121 SOGA1O94964 1423 aa26.91■■□□□ 1.9
CCNE1-204ENST00000574121 TARBP1Q13395 1621 aaKnown RBP26.87■■□□□ 1.89
CCNE1-204ENST00000574121 RAD54L2Q9Y4B4 1467 aa26.84■■□□□ 1.89
CCNE1-204ENST00000574121 ABCA10Q8WWZ4 1543 aa26.78■■□□□ 1.88
CCNE1-204ENST00000574121 ZNF608Q9ULD9 1512 aaPredicted RBP26.77■■□□□ 1.88
CCNE1-204ENST00000574121 WDR97A6NE52 1622 aa26.76■■□□□ 1.87
CCNE1-204ENST00000574121 TDRD9Q8NDG6 1382 aaKnown RBP26.7■■□□□ 1.86
CCNE1-204ENST00000574121 EIF4G3O43432 1585 aaKnown RBP26.69■■□□□ 1.86
CCNE1-204ENST00000574121 AQRO60306 1485 aaKnown RBP eCLIP26.68■■□□□ 1.86
CCNE1-204ENST00000574121 TRIM41Q8WV44 630 aa26.67■■□□□ 1.86
CCNE1-204ENST00000574121 GAPVD1Q14C86 1478 aa26.61■■□□□ 1.85
CCNE1-204ENST00000574121 ABCA5Q8WWZ7 1642 aa26.6■■□□□ 1.85
CCNE1-204ENST00000574121 GRIN2BQ13224 1484 aa26.58■■□□□ 1.85
CCNE1-204ENST00000574121 CHIC1Q5VXU3 224 aa26.56■■□□□ 1.84
CCNE1-204ENST00000574121 KIF27Q86VH2 1401 aa26.54■■□□□ 1.84
CCNE1-204ENST00000574121 MAGI1Q96QZ7 1491 aaPredicted RBP26.49■■□□□ 1.83
CCNE1-204ENST00000574121 ERICH3Q5RHP9 1530 aa26.47■■□□□ 1.83
CCNE1-204ENST00000574121 PBRM1Q86U86 1689 aa26.45■■□□□ 1.82
CCNE1-204ENST00000574121 SNAPC4Q5SXM2 1469 aa26.45■■□□□ 1.82
CCNE1-204ENST00000574121 SYNJ2O15056 1496 aa26.36■■□□□ 1.81
CCNE1-204ENST00000574121 IGF1RP08069 1367 aa26.36■■□□□ 1.81
CCNE1-204ENST00000574121 FHAD1B1AJZ9 1412 aa26.34■■□□□ 1.81
CCNE1-204ENST00000574121 ADAMTS12P58397 1594 aa26.32■■□□□ 1.8
CCNE1-204ENST00000574121 CHMP7Q8WUX9 453 aaPredicted RBP26.31■■□□□ 1.8
CCNE1-204ENST00000574121 EEA1Q15075 1411 aa26.3■■□□□ 1.8
CCNE1-204ENST00000574121 RUSC2Q8N2Y8 1516 aa26.29■■□□□ 1.8
CCNE1-204ENST00000574121 FBLN2P98095 1184 aa26.28■■□□□ 1.8
CCNE1-204ENST00000574121 OSCARQ8IYS5 282 aa26.28■■□□□ 1.8
CCNE1-204ENST00000574121 CUL7Q14999 1698 aa26.26■■□□□ 1.79
CCNE1-204ENST00000574121 CHD1O14646 1710 aa26.24■■□□□ 1.79
CCNE1-204ENST00000574121 GRIN2AQ12879 1464 aa26.23■■□□□ 1.79
CCNE1-204ENST00000574121 CARMIL1Q5VZK9 1371 aa26.21■■□□□ 1.79
CCNE1-204ENST00000574121 CSRNP3Q8WYN3 585 aa26.15■■□□□ 1.78
CCNE1-204ENST00000574121 NUP160Q12769 1436 aa26.12■■□□□ 1.77
CCNE1-204ENST00000574121 RAPGEF2Q9Y4G8 1499 aa26.11■■□□□ 1.77
CCNE1-204ENST00000574121 DNAJC5Q9H3Z4 198 aa26.1■■□□□ 1.77
CCNE1-204ENST00000574121 PRXQ9BXM0 1461 aa26.1■■□□□ 1.77
CCNE1-204ENST00000574121 CLASP1Q7Z460 1538 aa26.04■■□□□ 1.76
CCNE1-204ENST00000574121 CEP170Q5SW79 1584 aa26.03■■□□□ 1.76
CCNE1-204ENST00000574121 FAM9AQ8IZU1 332 aaPredicted RBP26.03■■□□□ 1.76
CCNE1-204ENST00000574121 KIAA0586Q9BVV6 1533 aa25.95■■□□□ 1.74
CCNE1-204ENST00000574121 KIF21BO75037 1637 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms