RNA–Protein interactions for RNA: ENST00000573360.5

TVP23A-207, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

TSL 2

Gene TVP23A, Length 3,677 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-207ENST00000573360 NISCHQ9Y2I1 1504 aa30.09■■■□□ 2.41
TVP23A-207ENST00000573360 DCAF8L2P0C7V8 631 aa26.37■■□□□ 1.81
TVP23A-207ENST00000573360 SHROOM4Q9ULL8 1493 aa25.82■■□□□ 1.72
TVP23A-207ENST00000573360 CCDC180Q9P1Z9 1646 aa25.64■■□□□ 1.69
TVP23A-207ENST00000573360 ABCC9O60706 1549 aa25.37■■□□□ 1.65
TVP23A-207ENST00000573360 ZCCHC6Q5VYS8 1495 aaKnown RBP25.17■■□□□ 1.62
TVP23A-207ENST00000573360 SUPT5HO00267 1087 aaKnown RBP24.98■■□□□ 1.59
TVP23A-207ENST00000573360 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
TVP23A-207ENST00000573360 DCAF1Q9Y4B6 1507 aa24.35■■□□□ 1.49
TVP23A-207ENST00000573360 PABPN1Q86U42 306 aaKnown RBP eCLIP24.32■■□□□ 1.48
TVP23A-207ENST00000573360 NACADO15069 1562 aa24.15■■□□□ 1.46
TVP23A-207ENST00000573360 RB1CC1Q8TDY2 1594 aa24.07■■□□□ 1.44
TVP23A-207ENST00000573360 MYO15BQ96JP2 1530 aa23.92■■□□□ 1.42
TVP23A-207ENST00000573360 CECR2Q9BXF3 1484 aa23.76■■□□□ 1.39
TVP23A-207ENST00000573360 RSF1Q96T23 1441 aaPredicted RBP23.6■■□□□ 1.37
TVP23A-207ENST00000573360 MROH2BQ7Z745 1585 aa23.47■■□□□ 1.35
TVP23A-207ENST00000573360 CHIC1Q5VXU3 224 aa23.4■■□□□ 1.34
TVP23A-207ENST00000573360 UNC13AQ9UPW8 1703 aa23.37■■□□□ 1.33
TVP23A-207ENST00000573360 EHMT2Q96KQ7 1210 aa23.36■■□□□ 1.33
TVP23A-207ENST00000573360 BICRAQ9NZM4 1560 aa23.3■■□□□ 1.32
TVP23A-207ENST00000573360 FAM9AQ8IZU1 332 aaPredicted RBP23.25■■□□□ 1.31
TVP23A-207ENST00000573360 WIZO95785 1651 aa23.24■■□□□ 1.31
TVP23A-207ENST00000573360 BAZ1AQ9NRL2 1556 aaPredicted RBP23.18■■□□□ 1.3
TVP23A-207ENST00000573360 TRIM41Q8WV44 630 aa23.15■■□□□ 1.3
TVP23A-207ENST00000573360 SMARCA4P51532 1647 aa23.04■■□□□ 1.28
TVP23A-207ENST00000573360 LOC105371045A0A1W2PR82 267 aa22.96■■□□□ 1.27
TVP23A-207ENST00000573360 BAZ1BQ9UIG0 1483 aaKnown RBP22.84■■□□□ 1.25
TVP23A-207ENST00000573360 ATAD2BQ9ULI0 1458 aa22.83■■□□□ 1.25
TVP23A-207ENST00000573360 CCDC88BA6NC98 1476 aa22.83■■□□□ 1.25
TVP23A-207ENST00000573360 EIF4G1Q04637 1599 aaKnown RBP22.76■■□□□ 1.23
TVP23A-207ENST00000573360 TOP2AP11388 1531 aaKnown RBP22.74■■□□□ 1.23
TVP23A-207ENST00000573360 DNAJC5BQ9UF47 199 aa22.66■■□□□ 1.22
TVP23A-207ENST00000573360 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
TVP23A-207ENST00000573360 ABCC8Q09428 1581 aa22.58■■□□□ 1.2
TVP23A-207ENST00000573360 RANGAP1P46060 587 aaPredicted RBP22.5■■□□□ 1.19
TVP23A-207ENST00000573360 CC2D2AQ9P2K1 1620 aa22.47■■□□□ 1.19
TVP23A-207ENST00000573360 NCAPD3P42695 1498 aa22.45■■□□□ 1.18
TVP23A-207ENST00000573360 PEG3Q9GZU2 1588 aa22.38■■□□□ 1.17
TVP23A-207ENST00000573360 UBTFP17480 764 aaKnown RBP22.34■■□□□ 1.17
TVP23A-207ENST00000573360 WRNQ14191 1432 aaPredicted RBP eCLIP22.32■■□□□ 1.16
TVP23A-207ENST00000573360 PPARGC1BQ86YN6 1023 aaKnown RBP22.3■■□□□ 1.16
TVP23A-207ENST00000573360 TTBK1Q5TCY1 1321 aaPredicted RBP22.3■■□□□ 1.16
TVP23A-207ENST00000573360 PCGF6Q9BYE7 350 aa22.28■■□□□ 1.16
TVP23A-207ENST00000573360 SOGA1O94964 1423 aa22.26■■□□□ 1.15
TVP23A-207ENST00000573360 HMGXB3Q12766 1538 aa22.22■■□□□ 1.15
TVP23A-207ENST00000573360 NESP48681 1621 aa22.19■■□□□ 1.14
TVP23A-207ENST00000573360 RUSC2Q8N2Y8 1516 aa22.17■■□□□ 1.14
TVP23A-207ENST00000573360 CSRNP3Q8WYN3 585 aa22.17■■□□□ 1.14
TVP23A-207ENST00000573360 CADPSQ9ULU8 1353 aa22.17■■□□□ 1.14
TVP23A-207ENST00000573360 HRCP23327 699 aa22.05■■□□□ 1.12
TVP23A-207ENST00000573360 CFTRP13569 1480 aa22.04■■□□□ 1.12
TVP23A-207ENST00000573360 SYNJ1O43426 1573 aa22.03■■□□□ 1.12
TVP23A-207ENST00000573360 FANCD2Q9BXW9 1451 aa21.95■■□□□ 1.1
TVP23A-207ENST00000573360 CUX1P39880 1505 aa21.86■■□□□ 1.09
TVP23A-207ENST00000573360 CUX2O14529 1486 aa21.8■■□□□ 1.08
TVP23A-207ENST00000573360 RAD54L2Q9Y4B4 1467 aa21.77■■□□□ 1.08
TVP23A-207ENST00000573360 PDS5BQ9NTI5 1447 aa21.77■■□□□ 1.08
TVP23A-207ENST00000573360 CEP164Q9UPV0 1460 aa21.76■■□□□ 1.07
TVP23A-207ENST00000573360 ATP1B4Q9UN42 357 aaPredicted RBP21.76■■□□□ 1.07
TVP23A-207ENST00000573360 TDRD9Q8NDG6 1382 aaKnown RBP21.75■■□□□ 1.07
TVP23A-207ENST00000573360 P3H3Q8IVL6 736 aa21.75■■□□□ 1.07
TVP23A-207ENST00000573360 FGD5Q6ZNL6 1462 aa21.74■■□□□ 1.07
TVP23A-207ENST00000573360 ERCC6Q03468 1493 aa21.73■■□□□ 1.07
TVP23A-207ENST00000573360 KIF27Q86VH2 1401 aa21.73■■□□□ 1.07
TVP23A-207ENST00000573360 TOP2BQ02880 1626 aa21.71■■□□□ 1.07
TVP23A-207ENST00000573360 EEA1Q15075 1411 aa21.69■■□□□ 1.06
TVP23A-207ENST00000573360 RAPGEF2Q9Y4G8 1499 aa21.69■■□□□ 1.06
TVP23A-207ENST00000573360 CEP162Q5TB80 1403 aa21.68■■□□□ 1.06
TVP23A-207ENST00000573360 FBLN2P98095 1184 aa21.67■■□□□ 1.06
TVP23A-207ENST00000573360 GOLGA3Q08378 1498 aa21.66■■□□□ 1.06
TVP23A-207ENST00000573360 APLP2Q06481 763 aa21.64■■□□□ 1.06
TVP23A-207ENST00000573360 TOPBP1Q92547 1522 aa21.61■■□□□ 1.05
TVP23A-207ENST00000573360 TNIKQ9UKE5 1360 aa21.59■■□□□ 1.05
TVP23A-207ENST00000573360 URB2Q14146 1524 aaKnown RBP21.57■■□□□ 1.04
TVP23A-207ENST00000573360 TRIM26Q12899 539 aaPredicted RBP21.57■■□□□ 1.04
TVP23A-207ENST00000573360 POLA1P09884 1462 aaPredicted RBP21.57■■□□□ 1.04
TVP23A-207ENST00000573360 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
TVP23A-207ENST00000573360 CARMIL1Q5VZK9 1371 aa21.55■■□□□ 1.04
TVP23A-207ENST00000573360 IGF1RP08069 1367 aa21.54■■□□□ 1.04
TVP23A-207ENST00000573360 CLIP1P30622 1438 aa21.54■■□□□ 1.04
TVP23A-207ENST00000573360 BIVM-ERCC5R4GMW8 1640 aa21.5■■□□□ 1.03
TVP23A-207ENST00000573360 AQRO60306 1485 aaKnown RBP eCLIP21.47■■□□□ 1.03
TVP23A-207ENST00000573360 ARID3CA6NKF2 412 aa21.46■■□□□ 1.03
TVP23A-207ENST00000573360 KIF21AQ7Z4S6 1674 aa21.45■■□□□ 1.02
TVP23A-207ENST00000573360 DNMBPQ6XZF7 1577 aa21.45■■□□□ 1.02
TVP23A-207ENST00000573360 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
TVP23A-207ENST00000573360 PRXQ9BXM0 1461 aa21.36■■□□□ 1.01
TVP23A-207ENST00000573360 PRDM2Q13029 1718 aa21.34■■□□□ 1.01
TVP23A-207ENST00000573360 HNRNPUL2Q1KMD3 747 aaKnown RBP21.34■■□□□ 1.01
TVP23A-207ENST00000573360 GAPVD1Q14C86 1478 aa21.33■■□□□ 1.01
TVP23A-207ENST00000573360 CHMP7Q8WUX9 453 aaPredicted RBP21.32■■□□□ 1
TVP23A-207ENST00000573360 ITGAEP38570 1179 aa21.31■■□□□ 1
TVP23A-207ENST00000573360 ZNF608Q9ULD9 1512 aaPredicted RBP21.31■■□□□ 1
TVP23A-207ENST00000573360 ABCA10Q8WWZ4 1543 aa21.28■■□□□ 1
TVP23A-207ENST00000573360 KIF21BO75037 1637 aa21.28■■□□□ 1
TVP23A-207ENST00000573360 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.22■□□□□ 0.99
TVP23A-207ENST00000573360 KANK4Q5T7N3 995 aaPredicted RBP21.2■□□□□ 0.99
TVP23A-207ENST00000573360 FHOD3Q2V2M9 1422 aa21.16■□□□□ 0.98
TVP23A-207ENST00000573360 VPS8Q8N3P4 1428 aa21.16■□□□□ 0.98
TVP23A-207ENST00000573360 ARAP1Q96P48 1450 aa21.14■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms