RNA–Protein interactions for RNA: ENST00000573332.5

LITAF-212, Transcript of lipopolysaccharide induced TNF factor, humanhuman

TSL 4

Gene LITAF, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LITAF-212ENST00000573332 NISCHQ9Y2I1 1504 aa41.54■■■■■ 4.24
LITAF-212ENST00000573332 CCDC180Q9P1Z9 1646 aa36.77■■■■□ 3.48
LITAF-212ENST00000573332 ABCC9O60706 1549 aa35.73■■■■□ 3.31
LITAF-212ENST00000573332 ZCCHC6Q5VYS8 1495 aaKnown RBP34.65■■■■□ 3.14
LITAF-212ENST00000573332 NACADO15069 1562 aa34.57■■■■□ 3.12
LITAF-212ENST00000573332 DCAF8L2P0C7V8 631 aa34.53■■■■□ 3.12
LITAF-212ENST00000573332 MYO15BQ96JP2 1530 aa34.51■■■■□ 3.12
LITAF-212ENST00000573332 RB1CC1Q8TDY2 1594 aa34.51■■■■□ 3.12
LITAF-212ENST00000573332 DCAF1Q9Y4B6 1507 aa34.43■■■■□ 3.1
LITAF-212ENST00000573332 UNC13AQ9UPW8 1703 aa33.61■■■□□ 2.97
LITAF-212ENST00000573332 SCRIBQ14160 1630 aa33.51■■■□□ 2.96
LITAF-212ENST00000573332 BICRAQ9NZM4 1560 aa33.46■■■□□ 2.95
LITAF-212ENST00000573332 PABPN1Q86U42 306 aaKnown RBP eCLIP33.45■■■□□ 2.95
LITAF-212ENST00000573332 SHROOM4Q9ULL8 1493 aa33.22■■■□□ 2.91
LITAF-212ENST00000573332 DNAJC5BQ9UF47 199 aa32.63■■■□□ 2.81
LITAF-212ENST00000573332 EIF4G1Q04637 1599 aaKnown RBP32.55■■■□□ 2.8
LITAF-212ENST00000573332 CC2D2AQ9P2K1 1620 aa32.33■■■□□ 2.77
LITAF-212ENST00000573332 CECR2Q9BXF3 1484 aa32.3■■■□□ 2.76
LITAF-212ENST00000573332 BAZ1AQ9NRL2 1556 aaPredicted RBP32.16■■■□□ 2.74
LITAF-212ENST00000573332 SMARCA4P51532 1647 aa32.13■■■□□ 2.73
LITAF-212ENST00000573332 MROH2BQ7Z745 1585 aa31.98■■■□□ 2.71
LITAF-212ENST00000573332 ATAD2BQ9ULI0 1458 aa31.95■■■□□ 2.7
LITAF-212ENST00000573332 NCAPD3P42695 1498 aa31.94■■■□□ 2.7
LITAF-212ENST00000573332 SMARCA2P51531 1590 aa31.91■■■□□ 2.7
LITAF-212ENST00000573332 PEG3Q9GZU2 1588 aa31.88■■■□□ 2.69
LITAF-212ENST00000573332 RSF1Q96T23 1441 aaPredicted RBP31.75■■■□□ 2.67
LITAF-212ENST00000573332 HMGXB3Q12766 1538 aa31.75■■■□□ 2.67
LITAF-212ENST00000573332 BAZ1BQ9UIG0 1483 aaKnown RBP31.66■■■□□ 2.66
LITAF-212ENST00000573332 WIZO95785 1651 aa31.6■■■□□ 2.65
LITAF-212ENST00000573332 TOP2AP11388 1531 aaKnown RBP31.34■■■□□ 2.61
LITAF-212ENST00000573332 SUPT5HO00267 1087 aaKnown RBP31.06■■■□□ 2.56
LITAF-212ENST00000573332 CADPSQ9ULU8 1353 aa31■■■□□ 2.55
LITAF-212ENST00000573332 LAMC3Q9Y6N6 1575 aa31■■■□□ 2.55
LITAF-212ENST00000573332 NESP48681 1621 aa30.99■■■□□ 2.55
LITAF-212ENST00000573332 CCDC88BA6NC98 1476 aa30.98■■■□□ 2.55
LITAF-212ENST00000573332 CFTRP13569 1480 aa30.87■■■□□ 2.53
LITAF-212ENST00000573332 PDS5BQ9NTI5 1447 aa30.81■■■□□ 2.52
LITAF-212ENST00000573332 ERCC6Q03468 1493 aa30.77■■■□□ 2.52
LITAF-212ENST00000573332 FANCD2Q9BXW9 1451 aa30.6■■■□□ 2.49
LITAF-212ENST00000573332 KIF21AQ7Z4S6 1674 aa30.57■■■□□ 2.48
LITAF-212ENST00000573332 CEP164Q9UPV0 1460 aa30.53■■■□□ 2.48
LITAF-212ENST00000573332 PRDM2Q13029 1718 aa30.5■■■□□ 2.47
LITAF-212ENST00000573332 THOC2Q8NI27 1593 aaKnown RBP30.47■■■□□ 2.47
LITAF-212ENST00000573332 MRC2Q9UBG0 1479 aa30.44■■■□□ 2.46
LITAF-212ENST00000573332 CUX2O14529 1486 aa30.44■■■□□ 2.46
LITAF-212ENST00000573332 WDR62O43379 1518 aa30.34■■■□□ 2.45
LITAF-212ENST00000573332 URB2Q14146 1524 aaKnown RBP30.27■■■□□ 2.44
LITAF-212ENST00000573332 ABCC8Q09428 1581 aa30.2■■■□□ 2.43
LITAF-212ENST00000573332 TOPBP1Q92547 1522 aa30.14■■■□□ 2.42
LITAF-212ENST00000573332 DNMBPQ6XZF7 1577 aa30.11■■■□□ 2.41
LITAF-212ENST00000573332 CUX1P39880 1505 aa29.99■■■□□ 2.39
LITAF-212ENST00000573332 WRNQ14191 1432 aaPredicted RBP eCLIP29.92■■■□□ 2.38
LITAF-212ENST00000573332 IFT140Q96RY7 1462 aa29.92■■■□□ 2.38
LITAF-212ENST00000573332 POLA1P09884 1462 aaPredicted RBP29.9■■■□□ 2.38
LITAF-212ENST00000573332 FGD5Q6ZNL6 1462 aa29.85■■■□□ 2.37
LITAF-212ENST00000573332 SOGA1O94964 1423 aa29.8■■■□□ 2.36
LITAF-212ENST00000573332 TOP2BQ02880 1626 aa29.8■■■□□ 2.36
LITAF-212ENST00000573332 TARBP1Q13395 1621 aaKnown RBP29.78■■■□□ 2.36
LITAF-212ENST00000573332 BIVM-ERCC5R4GMW8 1640 aa29.78■■■□□ 2.36
LITAF-212ENST00000573332 SYNJ1O43426 1573 aa29.77■■■□□ 2.36
LITAF-212ENST00000573332 RAD54L2Q9Y4B4 1467 aa29.74■■■□□ 2.35
LITAF-212ENST00000573332 ZNF608Q9ULD9 1512 aaPredicted RBP29.71■■■□□ 2.35
LITAF-212ENST00000573332 ABCA10Q8WWZ4 1543 aa29.61■■■□□ 2.33
LITAF-212ENST00000573332 WDR97A6NE52 1622 aa29.6■■■□□ 2.33
LITAF-212ENST00000573332 AQRO60306 1485 aaKnown RBP eCLIP29.59■■■□□ 2.332e-8■■■□□ 18.1
LITAF-212ENST00000573332 TDRD9Q8NDG6 1382 aaKnown RBP29.58■■■□□ 2.33
LITAF-212ENST00000573332 EIF4G3O43432 1585 aaKnown RBP29.57■■■□□ 2.32
LITAF-212ENST00000573332 GAPVD1Q14C86 1478 aa29.45■■■□□ 2.31
LITAF-212ENST00000573332 GRIN2BQ13224 1484 aa29.42■■■□□ 2.3
LITAF-212ENST00000573332 ABCA5Q8WWZ7 1642 aa29.42■■■□□ 2.3
LITAF-212ENST00000573332 TRIM41Q8WV44 630 aa29.37■■■□□ 2.29
LITAF-212ENST00000573332 MAGI1Q96QZ7 1491 aaPredicted RBP29.32■■■□□ 2.28
LITAF-212ENST00000573332 SNAPC4Q5SXM2 1469 aa29.31■■■□□ 2.28
LITAF-212ENST00000573332 KIF27Q86VH2 1401 aa29.28■■■□□ 2.28
LITAF-212ENST00000573332 PBRM1Q86U86 1689 aa29.26■■■□□ 2.27
LITAF-212ENST00000573332 ERICH3Q5RHP9 1530 aa29.25■■■□□ 2.27
LITAF-212ENST00000573332 DNAJC5Q9H3Z4 198 aa29.24■■■□□ 2.27
LITAF-212ENST00000573332 OSCARQ8IYS5 282 aa29.23■■■□□ 2.27
LITAF-212ENST00000573332 SYNJ2O15056 1496 aa29.2■■■□□ 2.26
LITAF-212ENST00000573332 CHIC1Q5VXU3 224 aa29.19■■■□□ 2.26
LITAF-212ENST00000573332 CHMP7Q8WUX9 453 aaPredicted RBP29.17■■■□□ 2.26
LITAF-212ENST00000573332 IGF1RP08069 1367 aa29.16■■■□□ 2.26
LITAF-212ENST00000573332 FBLN2P98095 1184 aa29.16■■■□□ 2.26
LITAF-212ENST00000573332 FHAD1B1AJZ9 1412 aa29.14■■■□□ 2.26
LITAF-212ENST00000573332 ADAMTS12P58397 1594 aa29.11■■■□□ 2.25
LITAF-212ENST00000573332 CHD1O14646 1710 aa29.1■■■□□ 2.25
LITAF-212ENST00000573332 RUSC2Q8N2Y8 1516 aa29.04■■■□□ 2.24
LITAF-212ENST00000573332 GRIN2AQ12879 1464 aa29.03■■■□□ 2.24
LITAF-212ENST00000573332 CUL7Q14999 1698 aa28.99■■■□□ 2.23
LITAF-212ENST00000573332 CARMIL1Q5VZK9 1371 aa28.98■■■□□ 2.23
LITAF-212ENST00000573332 NUP160Q12769 1436 aa28.93■■■□□ 2.22
LITAF-212ENST00000573332 EEA1Q15075 1411 aa28.92■■■□□ 2.22
LITAF-212ENST00000573332 CLASP1Q7Z460 1538 aa28.89■■■□□ 2.22
LITAF-212ENST00000573332 CEP170Q5SW79 1584 aa28.84■■■□□ 2.21
LITAF-212ENST00000573332 CSRNP3Q8WYN3 585 aa28.84■■■□□ 2.21
LITAF-212ENST00000573332 RAPGEF2Q9Y4G8 1499 aa28.81■■■□□ 2.2
LITAF-212ENST00000573332 PRXQ9BXM0 1461 aa28.8■■■□□ 2.2
LITAF-212ENST00000573332 KIAA0586Q9BVV6 1533 aa28.71■■■□□ 2.19
LITAF-212ENST00000573332 ARHGEF11O15085 1522 aa28.7■■■□□ 2.19
LITAF-212ENST00000573332 FAM9AQ8IZU1 332 aaPredicted RBP28.68■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms