RNA–Protein interactions for RNA: ENST00000570828.5

CTDNEP1-205, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 986 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-205ENST00000570828 AEBP2Q6ZN18 517 aaPredicted RBP33.93■■■■□ 3.02
CTDNEP1-205ENST00000570828 CHIC1Q5VXU3 224 aa31.81■■■□□ 2.68
CTDNEP1-205ENST00000570828 NISCHQ9Y2I1 1504 aa30.52■■■□□ 2.48
CTDNEP1-205ENST00000570828 SENP3Q9H4L4 574 aaPredicted RBP29.11■■■□□ 2.25
CTDNEP1-205ENST00000570828 PHF23Q9BUL5 403 aaPredicted RBP28.64■■■□□ 2.18
CTDNEP1-205ENST00000570828 CCDC180Q9P1Z9 1646 aa27.27■■□□□ 1.96
CTDNEP1-205ENST00000570828 FOXD1Q16676 465 aa27.15■■□□□ 1.94
CTDNEP1-205ENST00000570828 ABCC9O60706 1549 aa27.07■■□□□ 1.92
CTDNEP1-205ENST00000570828 POTEDQ86YR6 584 aa25.89■■□□□ 1.74
CTDNEP1-205ENST00000570828 RB1CC1Q8TDY2 1594 aa25.87■■□□□ 1.73
CTDNEP1-205ENST00000570828 NACADO15069 1562 aa25.75■■□□□ 1.71
CTDNEP1-205ENST00000570828 DCAF8L2P0C7V8 631 aa25.68■■□□□ 1.7
CTDNEP1-205ENST00000570828 MSH5O43196 834 aa25.67■■□□□ 1.7
CTDNEP1-205ENST00000570828 MYO15BQ96JP2 1530 aa25.48■■□□□ 1.67
CTDNEP1-205ENST00000570828 ZCCHC6Q5VYS8 1495 aaKnown RBP25.38■■□□□ 1.65
CTDNEP1-205ENST00000570828 PIAS4Q8N2W9 510 aaPredicted RBP25.27■■□□□ 1.64
CTDNEP1-205ENST00000570828 DCAF1Q9Y4B6 1507 aa25.24■■□□□ 1.63
CTDNEP1-205ENST00000570828 PABPN1Q86U42 306 aaKnown RBP eCLIP25.23■■□□□ 1.63
CTDNEP1-205ENST00000570828 PLPPR3Q6T4P5 718 aa25.18■■□□□ 1.62
CTDNEP1-205ENST00000570828 UNC13AQ9UPW8 1703 aa25.16■■□□□ 1.62
CTDNEP1-205ENST00000570828 DNAJC5BQ9UF47 199 aa25.11■■□□□ 1.61
CTDNEP1-205ENST00000570828 BICRAQ9NZM4 1560 aa25.05■■□□□ 1.6
CTDNEP1-205ENST00000570828 PPP6R1Q9UPN7 881 aa24.96■■□□□ 1.59
CTDNEP1-205ENST00000570828 SCRIBQ14160 1630 aa24.9■■□□□ 1.58
CTDNEP1-205ENST00000570828 ADRA2BP18089 450 aa24.86■■□□□ 1.57
CTDNEP1-205ENST00000570828 SHROOM4Q9ULL8 1493 aa24.83■■□□□ 1.57
CTDNEP1-205ENST00000570828 EIF4G1Q04637 1599 aaKnown RBP24.46■■□□□ 1.51
CTDNEP1-205ENST00000570828 CC2D2AQ9P2K1 1620 aa24.43■■□□□ 1.5
CTDNEP1-205ENST00000570828 CECR2Q9BXF3 1484 aa24.37■■□□□ 1.49
CTDNEP1-205ENST00000570828 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
CTDNEP1-205ENST00000570828 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
CTDNEP1-205ENST00000570828 ATAD2BQ9ULI0 1458 aa23.74■■□□□ 1.39
CTDNEP1-205ENST00000570828 BAZ1AQ9NRL2 1556 aaPredicted RBP23.7■■□□□ 1.38
CTDNEP1-205ENST00000570828 SMARCA2P51531 1590 aa23.69■■□□□ 1.38
CTDNEP1-205ENST00000570828 HMGXB3Q12766 1538 aa23.63■■□□□ 1.37
CTDNEP1-205ENST00000570828 BAZ1BQ9UIG0 1483 aaKnown RBP23.55■■□□□ 1.36
CTDNEP1-205ENST00000570828 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
CTDNEP1-205ENST00000570828 MROH2BQ7Z745 1585 aa23.52■■□□□ 1.36
CTDNEP1-205ENST00000570828 ERCC6Q03468 1493 aa23.4■■□□□ 1.34
CTDNEP1-205ENST00000570828 NESP48681 1621 aa23.3■■□□□ 1.32
CTDNEP1-205ENST00000570828 CUX2O14529 1486 aa23.24■■□□□ 1.31
CTDNEP1-205ENST00000570828 WIZO95785 1651 aa23.22■■□□□ 1.31
CTDNEP1-205ENST00000570828 LAMC3Q9Y6N6 1575 aa23.19■■□□□ 1.3
CTDNEP1-205ENST00000570828 RSF1Q96T23 1441 aaPredicted RBP23.13■■□□□ 1.29
CTDNEP1-205ENST00000570828 PDS5BQ9NTI5 1447 aa23.08■■□□□ 1.29
CTDNEP1-205ENST00000570828 CADPSQ9ULU8 1353 aa23.07■■□□□ 1.28
CTDNEP1-205ENST00000570828 THOC2Q8NI27 1593 aaKnown RBP23.01■■□□□ 1.27
CTDNEP1-205ENST00000570828 TOP2AP11388 1531 aaKnown RBP23■■□□□ 1.27
CTDNEP1-205ENST00000570828 MAPK8IP2Q13387 824 aaPredicted RBP22.99■■□□□ 1.27
CTDNEP1-205ENST00000570828 DMRT2Q9Y5R5 561 aa22.98■■□□□ 1.27
CTDNEP1-205ENST00000570828 KIF21AQ7Z4S6 1674 aa22.97■■□□□ 1.27
CTDNEP1-205ENST00000570828 DNAJC5Q9H3Z4 198 aa22.91■■□□□ 1.26
CTDNEP1-205ENST00000570828 MRC2Q9UBG0 1479 aa22.86■■□□□ 1.25
CTDNEP1-205ENST00000570828 CFTRP13569 1480 aa22.85■■□□□ 1.25
CTDNEP1-205ENST00000570828 SCAF1Q9H7N4 1312 aaKnown RBP22.85■■□□□ 1.25
CTDNEP1-205ENST00000570828 CEP164Q9UPV0 1460 aa22.83■■□□□ 1.25
CTDNEP1-205ENST00000570828 FANCD2Q9BXW9 1451 aa22.81■■□□□ 1.24
CTDNEP1-205ENST00000570828 WDR62O43379 1518 aa22.78■■□□□ 1.24
CTDNEP1-205ENST00000570828 CCDC88BA6NC98 1476 aa22.72■■□□□ 1.23
CTDNEP1-205ENST00000570828 URB2Q14146 1524 aaKnown RBP22.59■■□□□ 1.21
CTDNEP1-205ENST00000570828 PRDM2Q13029 1718 aa22.56■■□□□ 1.2
CTDNEP1-205ENST00000570828 TOPBP1Q92547 1522 aa22.4■■□□□ 1.18
CTDNEP1-205ENST00000570828 ABCC8Q09428 1581 aa22.38■■□□□ 1.17
CTDNEP1-205ENST00000570828 IFT140Q96RY7 1462 aa22.36■■□□□ 1.17
CTDNEP1-205ENST00000570828 DNMBPQ6XZF7 1577 aa22.34■■□□□ 1.17
CTDNEP1-205ENST00000570828 CACNB1Q02641 598 aaPredicted RBP22.34■■□□□ 1.17
CTDNEP1-205ENST00000570828 SUPT5HO00267 1087 aaKnown RBP22.31■■□□□ 1.16
CTDNEP1-205ENST00000570828 ZNF608Q9ULD9 1512 aaPredicted RBP22.27■■□□□ 1.16
CTDNEP1-205ENST00000570828 OSCARQ8IYS5 282 aa22.21■■□□□ 1.15
CTDNEP1-205ENST00000570828 POLA1P09884 1462 aaPredicted RBP22.19■■□□□ 1.14
CTDNEP1-205ENST00000570828 EIF4G3O43432 1585 aaKnown RBP22.16■■□□□ 1.14
CTDNEP1-205ENST00000570828 TARBP1Q13395 1621 aaKnown RBP22.14■■□□□ 1.14
CTDNEP1-205ENST00000570828 AQRO60306 1485 aaKnown RBP eCLIP22.1■■□□□ 1.132e-6■■■■■ 28.2
CTDNEP1-205ENST00000570828 SOGA1O94964 1423 aa22.09■■□□□ 1.13
CTDNEP1-205ENST00000570828 DCAF8L1A6NGE4 600 aa22.09■■□□□ 1.13
CTDNEP1-205ENST00000570828 CUX1P39880 1505 aa22.09■■□□□ 1.13
CTDNEP1-205ENST00000570828 FGD5Q6ZNL6 1462 aa22.09■■□□□ 1.13
CTDNEP1-205ENST00000570828 RAD54L2Q9Y4B4 1467 aa22.09■■□□□ 1.13
CTDNEP1-205ENST00000570828 TRIM41Q8WV44 630 aa22.05■■□□□ 1.12
CTDNEP1-205ENST00000570828 TDRD9Q8NDG6 1382 aaKnown RBP22.01■■□□□ 1.11
CTDNEP1-205ENST00000570828 PPP4R3CPQ6ZMV5 832 aa21.98■■□□□ 1.11
CTDNEP1-205ENST00000570828 WDR97A6NE52 1622 aa21.98■■□□□ 1.11
CTDNEP1-205ENST00000570828 FBLN2P98095 1184 aa21.94■■□□□ 1.1
CTDNEP1-205ENST00000570828 HOXD11P31277 338 aaPredicted RBP21.93■■□□□ 1.1
CTDNEP1-205ENST00000570828 SNAPC4Q5SXM2 1469 aa21.91■■□□□ 1.1
CTDNEP1-205ENST00000570828 CHD1O14646 1710 aa21.89■■□□□ 1.1
CTDNEP1-205ENST00000570828 GRIN2BQ13224 1484 aa21.89■■□□□ 1.09
CTDNEP1-205ENST00000570828 MAGI1Q96QZ7 1491 aaPredicted RBP21.87■■□□□ 1.09
CTDNEP1-205ENST00000570828 RIMBP3CA6NJZ7 1639 aa21.86■■□□□ 1.09
CTDNEP1-205ENST00000570828 RIMBP3BA6NNM3 1639 aa21.86■■□□□ 1.09
CTDNEP1-205ENST00000570828 RIMBP3Q9UFD9 1639 aa21.86■■□□□ 1.09
CTDNEP1-205ENST00000570828 ARHGEF11O15085 1522 aa21.85■■□□□ 1.09
CTDNEP1-205ENST00000570828 ABCA10Q8WWZ4 1543 aa21.85■■□□□ 1.09
CTDNEP1-205ENST00000570828 WRNQ14191 1432 aaPredicted RBP eCLIP21.85■■□□□ 1.09
CTDNEP1-205ENST00000570828 GAPVD1Q14C86 1478 aa21.83■■□□□ 1.09
CTDNEP1-205ENST00000570828 CHMP7Q8WUX9 453 aaPredicted RBP21.82■■□□□ 1.08
CTDNEP1-205ENST00000570828 RNF39Q9H2S5 420 aa21.82■■□□□ 1.08
CTDNEP1-205ENST00000570828 TOP2BQ02880 1626 aa21.8■■□□□ 1.08
CTDNEP1-205ENST00000570828 SYNJ2O15056 1496 aa21.79■■□□□ 1.08
CTDNEP1-205ENST00000570828 BIVM-ERCC5R4GMW8 1640 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms