RNA–Protein interactions for RNA: ENST00000569476.2

LINC00559-201, long intergenic non-protein coding RNA 559, humanhuman

TSL 1 (best) BASIC

Gene LINC00559, Length 3,867 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00559-201ENST00000569476 NISCHQ9Y2I1 1504 aa17.14■□□□□ 0.33
LINC00559-201ENST00000569476 CCDC180Q9P1Z9 1646 aa15.01□□□□□ -0.01
LINC00559-201ENST00000569476 ZCCHC6Q5VYS8 1495 aaKnown RBP14.53□□□□□ -0.08
LINC00559-201ENST00000569476 DCAF1Q9Y4B6 1507 aa14.42□□□□□ -0.1
LINC00559-201ENST00000569476 MYO15BQ96JP2 1530 aa14.16□□□□□ -0.14
LINC00559-201ENST00000569476 NACADO15069 1562 aa13.81□□□□□ -0.2
LINC00559-201ENST00000569476 SHROOM4Q9ULL8 1493 aa13.77□□□□□ -0.21
LINC00559-201ENST00000569476 ABCC9O60706 1549 aa13.69□□□□□ -0.22
LINC00559-201ENST00000569476 RB1CC1Q8TDY2 1594 aa13.55□□□□□ -0.24
LINC00559-201ENST00000569476 DCAF8L2P0C7V8 631 aa13.5□□□□□ -0.25
LINC00559-201ENST00000569476 SCRIBQ14160 1630 aa13.5□□□□□ -0.25
LINC00559-201ENST00000569476 SUPT5HO00267 1087 aaKnown RBP13.45□□□□□ -0.26
LINC00559-201ENST00000569476 RSF1Q96T23 1441 aaPredicted RBP13.35□□□□□ -0.27
LINC00559-201ENST00000569476 BAZ1AQ9NRL2 1556 aaPredicted RBP13.26□□□□□ -0.29
LINC00559-201ENST00000569476 CHIC1Q5VXU3 224 aa13.26□□□□□ -0.29
LINC00559-201ENST00000569476 UNC13AQ9UPW8 1703 aa13.21□□□□□ -0.3
LINC00559-201ENST00000569476 MROH2BQ7Z745 1585 aa13.14□□□□□ -0.31
LINC00559-201ENST00000569476 SMARCA4P51532 1647 aa13.12□□□□□ -0.31
LINC00559-201ENST00000569476 TOP2AP11388 1531 aaKnown RBP13.11□□□□□ -0.31
LINC00559-201ENST00000569476 CECR2Q9BXF3 1484 aa13.09□□□□□ -0.31
LINC00559-201ENST00000569476 PEG3Q9GZU2 1588 aa13.09□□□□□ -0.31
LINC00559-201ENST00000569476 EIF4G1Q04637 1599 aaKnown RBP13.06□□□□□ -0.32
LINC00559-201ENST00000569476 WIZO95785 1651 aa13.05□□□□□ -0.32
LINC00559-201ENST00000569476 BICRAQ9NZM4 1560 aa13.04□□□□□ -0.32
LINC00559-201ENST00000569476 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
LINC00559-201ENST00000569476 CCDC88BA6NC98 1476 aa12.82□□□□□ -0.36
LINC00559-201ENST00000569476 EEA1Q15075 1411 aa12.79□□□□□ -0.36
LINC00559-201ENST00000569476 TRIM41Q8WV44 630 aa12.79□□□□□ -0.36
LINC00559-201ENST00000569476 HMGXB3Q12766 1538 aa12.77□□□□□ -0.37
LINC00559-201ENST00000569476 ATAD2BQ9ULI0 1458 aa12.75□□□□□ -0.37
LINC00559-201ENST00000569476 BAZ1BQ9UIG0 1483 aaKnown RBP12.7□□□□□ -0.38
LINC00559-201ENST00000569476 NCAPD3P42695 1498 aa12.67□□□□□ -0.38
LINC00559-201ENST00000569476 PRDM2Q13029 1718 aa12.6□□□□□ -0.39
LINC00559-201ENST00000569476 BIVM-ERCC5R4GMW8 1640 aa12.58□□□□□ -0.4
LINC00559-201ENST00000569476 KIF21BO75037 1637 aa12.57□□□□□ -0.4
LINC00559-201ENST00000569476 WRNQ14191 1432 aaPredicted RBP eCLIP12.56□□□□□ -0.4
LINC00559-201ENST00000569476 TRIM26Q12899 539 aaPredicted RBP12.56□□□□□ -0.4
LINC00559-201ENST00000569476 ABCC8Q09428 1581 aa12.56□□□□□ -0.4
LINC00559-201ENST00000569476 LOC105371045A0A1W2PR82 267 aa12.55□□□□□ -0.4
LINC00559-201ENST00000569476 HRCP23327 699 aa12.55□□□□□ -0.4
LINC00559-201ENST00000569476 PABPN1Q86U42 306 aaKnown RBP eCLIP12.55□□□□□ -0.4
LINC00559-201ENST00000569476 TOP2BQ02880 1626 aa12.54□□□□□ -0.4
LINC00559-201ENST00000569476 TNIKQ9UKE5 1360 aa12.52□□□□□ -0.4
LINC00559-201ENST00000569476 GOLGA3Q08378 1498 aa12.49□□□□□ -0.41
LINC00559-201ENST00000569476 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
LINC00559-201ENST00000569476 CEP164Q9UPV0 1460 aa12.47□□□□□ -0.41
LINC00559-201ENST00000569476 CFTRP13569 1480 aa12.45□□□□□ -0.42
LINC00559-201ENST00000569476 ERICH3Q5RHP9 1530 aa12.43□□□□□ -0.42
LINC00559-201ENST00000569476 ZEB1P37275 1124 aaPredicted RBP12.43□□□□□ -0.42
LINC00559-201ENST00000569476 CSRNP3Q8WYN3 585 aa12.4□□□□□ -0.42
LINC00559-201ENST00000569476 PCGF6Q9BYE7 350 aa12.39□□□□□ -0.43
LINC00559-201ENST00000569476 SOGA1O94964 1423 aa12.38□□□□□ -0.43
LINC00559-201ENST00000569476 CEP162Q5TB80 1403 aa12.37□□□□□ -0.43
LINC00559-201ENST00000569476 FAM9AQ8IZU1 332 aaPredicted RBP12.31□□□□□ -0.44
LINC00559-201ENST00000569476 CUX1P39880 1505 aa12.3□□□□□ -0.44
LINC00559-201ENST00000569476 PRXQ9BXM0 1461 aa12.29□□□□□ -0.44
LINC00559-201ENST00000569476 CC2D2AQ9P2K1 1620 aa12.29□□□□□ -0.44
LINC00559-201ENST00000569476 RUSC2Q8N2Y8 1516 aa12.27□□□□□ -0.44
LINC00559-201ENST00000569476 CADPSQ9ULU8 1353 aa12.27□□□□□ -0.44
LINC00559-201ENST00000569476 KIF27Q86VH2 1401 aa12.26□□□□□ -0.45
LINC00559-201ENST00000569476 LAMC3Q9Y6N6 1575 aa12.22□□□□□ -0.45
LINC00559-201ENST00000569476 VPS8Q8N3P4 1428 aa12.22□□□□□ -0.45
LINC00559-201ENST00000569476 CLIP1P30622 1438 aa12.21□□□□□ -0.46
LINC00559-201ENST00000569476 DNMBPQ6XZF7 1577 aa12.2□□□□□ -0.46
LINC00559-201ENST00000569476 RAPGEF2Q9Y4G8 1499 aa12.17□□□□□ -0.46
LINC00559-201ENST00000569476 MAP3K1Q13233 1512 aa12.15□□□□□ -0.46
LINC00559-201ENST00000569476 CUL7Q14999 1698 aa12.14□□□□□ -0.47
LINC00559-201ENST00000569476 UBTFP17480 764 aaKnown RBP12.13□□□□□ -0.47
LINC00559-201ENST00000569476 FANCD2Q9BXW9 1451 aa12.12□□□□□ -0.47
LINC00559-201ENST00000569476 ABCA10Q8WWZ4 1543 aa12.12□□□□□ -0.47
LINC00559-201ENST00000569476 WDR97A6NE52 1622 aa12.11□□□□□ -0.47
LINC00559-201ENST00000569476 FGD5Q6ZNL6 1462 aa12.1□□□□□ -0.47
LINC00559-201ENST00000569476 ARAP1Q96P48 1450 aa12.08□□□□□ -0.48
LINC00559-201ENST00000569476 EFCAB5A4FU69 1503 aa12.06□□□□□ -0.48
LINC00559-201ENST00000569476 TOPBP1Q92547 1522 aa12.06□□□□□ -0.48
LINC00559-201ENST00000569476 CUX2O14529 1486 aa12.05□□□□□ -0.48
LINC00559-201ENST00000569476 IGF1RP08069 1367 aa12.03□□□□□ -0.48
LINC00559-201ENST00000569476 PDS5BQ9NTI5 1447 aa12.03□□□□□ -0.48
LINC00559-201ENST00000569476 ABCA5Q8WWZ7 1642 aa12.01□□□□□ -0.49
LINC00559-201ENST00000569476 CTTNBP2Q8WZ74 1663 aa12.01□□□□□ -0.49
LINC00559-201ENST00000569476 AQRO60306 1485 aaKnown RBP eCLIP12.01□□□□□ -0.49
LINC00559-201ENST00000569476 KIF21AQ7Z4S6 1674 aa12□□□□□ -0.49
LINC00559-201ENST00000569476 POLA1P09884 1462 aaPredicted RBP11.99□□□□□ -0.49
LINC00559-201ENST00000569476 ARHGAP35Q9NRY4 1499 aa11.99□□□□□ -0.49
LINC00559-201ENST00000569476 CFAP43Q8NDM7 1665 aa11.99□□□□□ -0.49
LINC00559-201ENST00000569476 CARMIL1Q5VZK9 1371 aa11.98□□□□□ -0.49
LINC00559-201ENST00000569476 APLP2Q06481 763 aa11.98□□□□□ -0.49
LINC00559-201ENST00000569476 FHAD1B1AJZ9 1412 aa11.97□□□□□ -0.49
LINC00559-201ENST00000569476 RRBP1Q9P2E9 1410 aaKnown RBP11.97□□□□□ -0.49
LINC00559-201ENST00000569476 CLSPNQ9HAW4 1339 aa11.96□□□□□ -0.49
LINC00559-201ENST00000569476 THOC2Q8NI27 1593 aaKnown RBP11.95□□□□□ -0.5
LINC00559-201ENST00000569476 URB2Q14146 1524 aaKnown RBP11.94□□□□□ -0.5
LINC00559-201ENST00000569476 TIAM1Q13009 1591 aa11.94□□□□□ -0.5
LINC00559-201ENST00000569476 EHMT2Q96KQ7 1210 aa11.92□□□□□ -0.5
LINC00559-201ENST00000569476 FYCO1Q9BQS8 1478 aa11.91□□□□□ -0.5
LINC00559-201ENST00000569476 TARBP1Q13395 1621 aaKnown RBP11.9□□□□□ -0.5
LINC00559-201ENST00000569476 SAMD9Q5K651 1589 aa11.9□□□□□ -0.5
LINC00559-201ENST00000569476 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.88□□□□□ -0.51
LINC00559-201ENST00000569476 PPARGC1BQ86YN6 1023 aaKnown RBP11.87□□□□□ -0.51
LINC00559-201ENST00000569476 MRC2Q9UBG0 1479 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms