RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 NISCHQ9Y2I1 1504 aa21.67■■□□□ 1.06
CHD9-219ENST00000569225 CCDC180Q9P1Z9 1646 aa19.16■□□□□ 0.66
CHD9-219ENST00000569225 ABCC9O60706 1549 aa18.58■□□□□ 0.56
CHD9-219ENST00000569225 ZCCHC6Q5VYS8 1495 aaKnown RBP18.1■□□□□ 0.49
CHD9-219ENST00000569225 DCAF8L2P0C7V8 631 aa18.07■□□□□ 0.48
CHD9-219ENST00000569225 NACADO15069 1562 aa18.01■□□□□ 0.47
CHD9-219ENST00000569225 RB1CC1Q8TDY2 1594 aa17.98■□□□□ 0.47
CHD9-219ENST00000569225 MYO15BQ96JP2 1530 aa17.98■□□□□ 0.47
CHD9-219ENST00000569225 DCAF1Q9Y4B6 1507 aa17.97■□□□□ 0.47
CHD9-219ENST00000569225 SCRIBQ14160 1630 aa17.49■□□□□ 0.39
CHD9-219ENST00000569225 UNC13AQ9UPW8 1703 aa17.42■□□□□ 0.38
CHD9-219ENST00000569225 PABPN1Q86U42 306 aaKnown RBP eCLIP17.41■□□□□ 0.38
CHD9-219ENST00000569225 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
CHD9-219ENST00000569225 SHROOM4Q9ULL8 1493 aa17.3■□□□□ 0.36
CHD9-219ENST00000569225 EIF4G1Q04637 1599 aaKnown RBP16.92■□□□□ 0.3
CHD9-219ENST00000569225 DNAJC5BQ9UF47 199 aa16.84■□□□□ 0.29
CHD9-219ENST00000569225 CECR2Q9BXF3 1484 aa16.83■□□□□ 0.29
CHD9-219ENST00000569225 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
CHD9-219ENST00000569225 CC2D2AQ9P2K1 1620 aa16.79■□□□□ 0.28
CHD9-219ENST00000569225 SMARCA4P51532 1647 aa16.75■□□□□ 0.27
CHD9-219ENST00000569225 MROH2BQ7Z745 1585 aa16.68■□□□□ 0.26
CHD9-219ENST00000569225 SMARCA2P51531 1590 aa16.65■□□□□ 0.26
CHD9-219ENST00000569225 ATAD2BQ9ULI0 1458 aa16.64■□□□□ 0.25
CHD9-219ENST00000569225 NCAPD3P42695 1498 aa16.62■□□□□ 0.25
CHD9-219ENST00000569225 RSF1Q96T23 1441 aaPredicted RBP16.6■□□□□ 0.25
CHD9-219ENST00000569225 PEG3Q9GZU2 1588 aa16.6■□□□□ 0.25
CHD9-219ENST00000569225 HMGXB3Q12766 1538 aa16.54■□□□□ 0.24
CHD9-219ENST00000569225 BAZ1BQ9UIG0 1483 aaKnown RBP16.53■□□□□ 0.24
CHD9-219ENST00000569225 WIZO95785 1651 aa16.48■□□□□ 0.23
CHD9-219ENST00000569225 TOP2AP11388 1531 aaKnown RBP16.38■□□□□ 0.21
CHD9-219ENST00000569225 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
CHD9-219ENST00000569225 CCDC88BA6NC98 1476 aa16.18■□□□□ 0.18
CHD9-219ENST00000569225 CADPSQ9ULU8 1353 aa16.16■□□□□ 0.18
CHD9-219ENST00000569225 LAMC3Q9Y6N6 1575 aa16.13■□□□□ 0.17
CHD9-219ENST00000569225 NESP48681 1621 aa16.11■□□□□ 0.17
CHD9-219ENST00000569225 CFTRP13569 1480 aa16.09■□□□□ 0.17
CHD9-219ENST00000569225 PDS5BQ9NTI5 1447 aa16.07■□□□□ 0.16
CHD9-219ENST00000569225 ERCC6Q03468 1493 aa16.05■□□□□ 0.16
CHD9-219ENST00000569225 FANCD2Q9BXW9 1451 aa15.96■□□□□ 0.15
CHD9-219ENST00000569225 CEP164Q9UPV0 1460 aa15.93■□□□□ 0.14
CHD9-219ENST00000569225 KIF21AQ7Z4S6 1674 aa15.88■□□□□ 0.13
CHD9-219ENST00000569225 PRDM2Q13029 1718 aa15.88■□□□□ 0.13
CHD9-219ENST00000569225 MRC2Q9UBG0 1479 aa15.86■□□□□ 0.13
CHD9-219ENST00000569225 THOC2Q8NI27 1593 aaKnown RBP15.82■□□□□ 0.12
CHD9-219ENST00000569225 CUX2O14529 1486 aa15.79■□□□□ 0.12
CHD9-219ENST00000569225 WDR62O43379 1518 aa15.78■□□□□ 0.12
CHD9-219ENST00000569225 ABCC8Q09428 1581 aa15.77■□□□□ 0.11
CHD9-219ENST00000569225 URB2Q14146 1524 aaKnown RBP15.76■□□□□ 0.11
CHD9-219ENST00000569225 DNMBPQ6XZF7 1577 aa15.71■□□□□ 0.11
CHD9-219ENST00000569225 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
CHD9-219ENST00000569225 WRNQ14191 1432 aaPredicted RBP eCLIP15.66■□□□□ 0.1
CHD9-219ENST00000569225 CUX1P39880 1505 aa15.65■□□□□ 0.1
CHD9-219ENST00000569225 IFT140Q96RY7 1462 aa15.6■□□□□ 0.09
CHD9-219ENST00000569225 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
CHD9-219ENST00000569225 FGD5Q6ZNL6 1462 aa15.58■□□□□ 0.09
CHD9-219ENST00000569225 TOP2BQ02880 1626 aa15.57■□□□□ 0.08
CHD9-219ENST00000569225 SOGA1O94964 1423 aa15.56■□□□□ 0.08
CHD9-219ENST00000569225 SYNJ1O43426 1573 aa15.56■□□□□ 0.08
CHD9-219ENST00000569225 BIVM-ERCC5R4GMW8 1640 aa15.54■□□□□ 0.08
CHD9-219ENST00000569225 RAD54L2Q9Y4B4 1467 aa15.51■□□□□ 0.07
CHD9-219ENST00000569225 TARBP1Q13395 1621 aaKnown RBP15.49■□□□□ 0.07
CHD9-219ENST00000569225 ZNF608Q9ULD9 1512 aaPredicted RBP15.46■□□□□ 0.07
CHD9-219ENST00000569225 TRIM41Q8WV44 630 aa15.46■□□□□ 0.06
CHD9-219ENST00000569225 ABCA10Q8WWZ4 1543 aa15.45■□□□□ 0.06
CHD9-219ENST00000569225 TDRD9Q8NDG6 1382 aaKnown RBP15.44■□□□□ 0.06
CHD9-219ENST00000569225 WDR97A6NE52 1622 aa15.43■□□□□ 0.06
CHD9-219ENST00000569225 AQRO60306 1485 aaKnown RBP eCLIP15.41■□□□□ 0.063e-7■■□□□ 11.6
CHD9-219ENST00000569225 EIF4G3O43432 1585 aaKnown RBP15.4■□□□□ 0.06
CHD9-219ENST00000569225 GAPVD1Q14C86 1478 aa15.37■□□□□ 0.05
CHD9-219ENST00000569225 GRIN2BQ13224 1484 aa15.36■□□□□ 0.05
CHD9-219ENST00000569225 CHIC1Q5VXU3 224 aa15.35■□□□□ 0.05
CHD9-219ENST00000569225 KIF27Q86VH2 1401 aa15.34■□□□□ 0.05
CHD9-219ENST00000569225 ABCA5Q8WWZ7 1642 aa15.33■□□□□ 0.05
CHD9-219ENST00000569225 MAGI1Q96QZ7 1491 aaPredicted RBP15.29■□□□□ 0.04
CHD9-219ENST00000569225 SNAPC4Q5SXM2 1469 aa15.29■□□□□ 0.04
CHD9-219ENST00000569225 ERICH3Q5RHP9 1530 aa15.27■□□□□ 0.04
CHD9-219ENST00000569225 PBRM1Q86U86 1689 aa15.25■□□□□ 0.03
CHD9-219ENST00000569225 FBLN2P98095 1184 aa15.24■□□□□ 0.03
CHD9-219ENST00000569225 CHMP7Q8WUX9 453 aaPredicted RBP15.24■□□□□ 0.03
CHD9-219ENST00000569225 SYNJ2O15056 1496 aa15.23■□□□□ 0.03
CHD9-219ENST00000569225 IGF1RP08069 1367 aa15.23■□□□□ 0.03
CHD9-219ENST00000569225 FHAD1B1AJZ9 1412 aa15.22■□□□□ 0.03
CHD9-219ENST00000569225 OSCARQ8IYS5 282 aa15.2■□□□□ 0.02
CHD9-219ENST00000569225 EEA1Q15075 1411 aa15.19■□□□□ 0.02
CHD9-219ENST00000569225 ADAMTS12P58397 1594 aa15.19■□□□□ 0.02
CHD9-219ENST00000569225 RUSC2Q8N2Y8 1516 aa15.17■□□□□ 0.02
CHD9-219ENST00000569225 CUL7Q14999 1698 aa15.16■□□□□ 0.02
CHD9-219ENST00000569225 CARMIL1Q5VZK9 1371 aa15.15■□□□□ 0.02
CHD9-219ENST00000569225 GRIN2AQ12879 1464 aa15.14■□□□□ 0.01
CHD9-219ENST00000569225 CSRNP3Q8WYN3 585 aa15.12■□□□□ 0.01
CHD9-219ENST00000569225 CHD1O14646 1710 aa15.12■□□□□ 0.01
CHD9-219ENST00000569225 FAM9AQ8IZU1 332 aaPredicted RBP15.1■□□□□ 0.01
CHD9-219ENST00000569225 RAPGEF2Q9Y4G8 1499 aa15.08■□□□□ 0.01
CHD9-219ENST00000569225 DNAJC5Q9H3Z4 198 aa15.08■□□□□ 0
CHD9-219ENST00000569225 PRXQ9BXM0 1461 aa15.07■□□□□ 0
CHD9-219ENST00000569225 NUP160Q12769 1436 aa15.06■□□□□ 0
CHD9-219ENST00000569225 CEP170Q5SW79 1584 aa15.02□□□□□ -0.01
CHD9-219ENST00000569225 CLASP1Q7Z460 1538 aa15.01□□□□□ -0.01
CHD9-219ENST00000569225 KIAA0586Q9BVV6 1533 aa14.99□□□□□ -0.01
CHD9-219ENST00000569225 KIF21BO75037 1637 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms