RNA–Protein interactions for RNA: ENST00000567379.5

VPS9D1-206, Transcript of VPS9 domain containing 1, humanhuman

TSL 5

Gene VPS9D1, Length 694 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-206ENST00000567379 NISCHQ9Y2I1 1504 aa24.48■■□□□ 1.51
VPS9D1-206ENST00000567379 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
VPS9D1-206ENST00000567379 ABCC9O60706 1549 aa20.95■□□□□ 0.94
VPS9D1-206ENST00000567379 ZCCHC6Q5VYS8 1495 aaKnown RBP20.56■□□□□ 0.88
VPS9D1-206ENST00000567379 DNAJC5BQ9UF47 199 aa20.32■□□□□ 0.84
VPS9D1-206ENST00000567379 DCAF1Q9Y4B6 1507 aa20.27■□□□□ 0.83
VPS9D1-206ENST00000567379 DCAF8L2P0C7V8 631 aa20.23■□□□□ 0.83
VPS9D1-206ENST00000567379 MYO15BQ96JP2 1530 aa20.02■□□□□ 0.79
VPS9D1-206ENST00000567379 SHROOM4Q9ULL8 1493 aa19.96■□□□□ 0.79
VPS9D1-206ENST00000567379 NACADO15069 1562 aa19.91■□□□□ 0.78
VPS9D1-206ENST00000567379 RB1CC1Q8TDY2 1594 aa19.73■□□□□ 0.75
VPS9D1-206ENST00000567379 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
VPS9D1-206ENST00000567379 DNAJC5Q9H3Z4 198 aa19.36■□□□□ 0.69
VPS9D1-206ENST00000567379 PABPN1Q86U42 306 aaKnown RBP eCLIP19.3■□□□□ 0.68
VPS9D1-206ENST00000567379 UNC13AQ9UPW8 1703 aa19.29■□□□□ 0.68
VPS9D1-206ENST00000567379 SUPT5HO00267 1087 aaKnown RBP19.24■□□□□ 0.67
VPS9D1-206ENST00000567379 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.65
VPS9D1-206ENST00000567379 CECR2Q9BXF3 1484 aa18.99■□□□□ 0.63
VPS9D1-206ENST00000567379 RSF1Q96T23 1441 aaPredicted RBP18.99■□□□□ 0.63
VPS9D1-206ENST00000567379 BAZ1AQ9NRL2 1556 aaPredicted RBP18.92■□□□□ 0.62
VPS9D1-206ENST00000567379 CC2D2AQ9P2K1 1620 aa18.91■□□□□ 0.62
VPS9D1-206ENST00000567379 MROH2BQ7Z745 1585 aa18.89■□□□□ 0.61
VPS9D1-206ENST00000567379 SMARCA4P51532 1647 aa18.82■□□□□ 0.6
VPS9D1-206ENST00000567379 WIZO95785 1651 aa18.75■□□□□ 0.59
VPS9D1-206ENST00000567379 EIF4G1Q04637 1599 aaKnown RBP18.68■□□□□ 0.58
VPS9D1-206ENST00000567379 PEG3Q9GZU2 1588 aa18.58■□□□□ 0.56
VPS9D1-206ENST00000567379 TOP2AP11388 1531 aaKnown RBP18.58■□□□□ 0.56
VPS9D1-206ENST00000567379 SMARCA2P51531 1590 aa18.53■□□□□ 0.56
VPS9D1-206ENST00000567379 ATAD2BQ9ULI0 1458 aa18.5■□□□□ 0.55
VPS9D1-206ENST00000567379 CUX2O14529 1486 aa18.48■□□□□ 0.55
VPS9D1-206ENST00000567379 CHIC1Q5VXU3 224 aa18.43■□□□□ 0.54
VPS9D1-206ENST00000567379 BAZ1BQ9UIG0 1483 aaKnown RBP18.41■□□□□ 0.54
VPS9D1-206ENST00000567379 CCDC88BA6NC98 1476 aa18.37■□□□□ 0.53
VPS9D1-206ENST00000567379 NCAPD3P42695 1498 aa18.34■□□□□ 0.53
VPS9D1-206ENST00000567379 HMGXB3Q12766 1538 aa18.33■□□□□ 0.53
VPS9D1-206ENST00000567379 ERCC6Q03468 1493 aa18.2■□□□□ 0.5
VPS9D1-206ENST00000567379 TRIM41Q8WV44 630 aa18.14■□□□□ 0.49
VPS9D1-206ENST00000567379 ABCC8Q09428 1581 aa17.97■□□□□ 0.47
VPS9D1-206ENST00000567379 CFTRP13569 1480 aa17.93■□□□□ 0.46
VPS9D1-206ENST00000567379 WRNQ14191 1432 aaPredicted RBP eCLIP17.89■□□□□ 0.46
VPS9D1-206ENST00000567379 PRDM2Q13029 1718 aa17.89■□□□□ 0.46
VPS9D1-206ENST00000567379 CADPSQ9ULU8 1353 aa17.88■□□□□ 0.45
VPS9D1-206ENST00000567379 THOC2Q8NI27 1593 aaKnown RBP17.8■□□□□ 0.44
VPS9D1-206ENST00000567379 SYNJ1O43426 1573 aa17.79■□□□□ 0.44
VPS9D1-206ENST00000567379 FAM9AQ8IZU1 332 aaPredicted RBP17.75■□□□□ 0.43
VPS9D1-206ENST00000567379 TOP2BQ02880 1626 aa17.74■□□□□ 0.43
VPS9D1-206ENST00000567379 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
VPS9D1-206ENST00000567379 BIVM-ERCC5R4GMW8 1640 aa17.73■□□□□ 0.43
VPS9D1-206ENST00000567379 NESP48681 1621 aa17.72■□□□□ 0.43
VPS9D1-206ENST00000567379 LOC105371045A0A1W2PR82 267 aa17.69■□□□□ 0.42
VPS9D1-206ENST00000567379 EEA1Q15075 1411 aa17.69■□□□□ 0.42
VPS9D1-206ENST00000567379 FANCD2Q9BXW9 1451 aa17.68■□□□□ 0.42
VPS9D1-206ENST00000567379 CUX1P39880 1505 aa17.67■□□□□ 0.42
VPS9D1-206ENST00000567379 SOGA1O94964 1423 aa17.64■□□□□ 0.41
VPS9D1-206ENST00000567379 PDS5BQ9NTI5 1447 aa17.61■□□□□ 0.41
VPS9D1-206ENST00000567379 CEP164Q9UPV0 1460 aa17.58■□□□□ 0.41
VPS9D1-206ENST00000567379 CSRNP3Q8WYN3 585 aa17.56■□□□□ 0.4
VPS9D1-206ENST00000567379 RUSC2Q8N2Y8 1516 aa17.56■□□□□ 0.4
VPS9D1-206ENST00000567379 DNMBPQ6XZF7 1577 aa17.54■□□□□ 0.4
VPS9D1-206ENST00000567379 KIF21AQ7Z4S6 1674 aa17.52■□□□□ 0.4
VPS9D1-206ENST00000567379 FGD5Q6ZNL6 1462 aa17.49■□□□□ 0.39
VPS9D1-206ENST00000567379 TOPBP1Q92547 1522 aa17.48■□□□□ 0.39
VPS9D1-206ENST00000567379 EHMT2Q96KQ7 1210 aa17.48■□□□□ 0.39
VPS9D1-206ENST00000567379 KIF27Q86VH2 1401 aa17.46■□□□□ 0.39
VPS9D1-206ENST00000567379 URB2Q14146 1524 aaKnown RBP17.44■□□□□ 0.38
VPS9D1-206ENST00000567379 KIF21BO75037 1637 aa17.43■□□□□ 0.38
VPS9D1-206ENST00000567379 GOLGA3Q08378 1498 aa17.43■□□□□ 0.38
VPS9D1-206ENST00000567379 OSCARQ8IYS5 282 aa17.42■□□□□ 0.38
VPS9D1-206ENST00000567379 POLA1P09884 1462 aaPredicted RBP17.39■□□□□ 0.37
VPS9D1-206ENST00000567379 MRC2Q9UBG0 1479 aa17.37■□□□□ 0.37
VPS9D1-206ENST00000567379 TNIKQ9UKE5 1360 aa17.37■□□□□ 0.37
VPS9D1-206ENST00000567379 UBTFP17480 764 aaKnown RBP17.36■□□□□ 0.37
VPS9D1-206ENST00000567379 WDR62O43379 1518 aa17.36■□□□□ 0.37
VPS9D1-206ENST00000567379 ABCA10Q8WWZ4 1543 aa17.34■□□□□ 0.37
VPS9D1-206ENST00000567379 RIMBP3CA6NJZ7 1639 aa17.33■□□□□ 0.37
VPS9D1-206ENST00000567379 RIMBP3BA6NNM3 1639 aa17.33■□□□□ 0.37
VPS9D1-206ENST00000567379 RIMBP3Q9UFD9 1639 aa17.33■□□□□ 0.37
VPS9D1-206ENST00000567379 RAD54L2Q9Y4B4 1467 aa17.33■□□□□ 0.37
VPS9D1-206ENST00000567379 AEBP2Q6ZN18 517 aaPredicted RBP17.32■□□□□ 0.36
VPS9D1-206ENST00000567379 ERICH3Q5RHP9 1530 aa17.31■□□□□ 0.36
VPS9D1-206ENST00000567379 PRXQ9BXM0 1461 aa17.31■□□□□ 0.36
VPS9D1-206ENST00000567379 RAPGEF2Q9Y4G8 1499 aa17.29■□□□□ 0.36
VPS9D1-206ENST00000567379 WDR97A6NE52 1622 aa17.28■□□□□ 0.36
VPS9D1-206ENST00000567379 IGF1RP08069 1367 aa17.27■□□□□ 0.35
VPS9D1-206ENST00000567379 CEP162Q5TB80 1403 aa17.26■□□□□ 0.35
VPS9D1-206ENST00000567379 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-206ENST00000567379 CARMIL1Q5VZK9 1371 aa17.21■□□□□ 0.35
VPS9D1-206ENST00000567379 ABCA5Q8WWZ7 1642 aa17.19■□□□□ 0.34
VPS9D1-206ENST00000567379 ARHGEF11O15085 1522 aa17.19■□□□□ 0.34
VPS9D1-206ENST00000567379 GAPVD1Q14C86 1478 aa17.18■□□□□ 0.34
VPS9D1-206ENST00000567379 CUL7Q14999 1698 aa17.17■□□□□ 0.34
VPS9D1-206ENST00000567379 IFT140Q96RY7 1462 aa17.17■□□□□ 0.34
VPS9D1-206ENST00000567379 TDRD9Q8NDG6 1382 aaKnown RBP17.16■□□□□ 0.34
VPS9D1-206ENST00000567379 TRHP20396 242 aaPredicted RBP17.15■□□□□ 0.34
VPS9D1-206ENST00000567379 CLIP1P30622 1438 aa17.13■□□□□ 0.33
VPS9D1-206ENST00000567379 PBRM1Q86U86 1689 aa17.08■□□□□ 0.32
VPS9D1-206ENST00000567379 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.32
VPS9D1-206ENST00000567379 CYB5RLQ6IPT4 315 aa17.04■□□□□ 0.32
VPS9D1-206ENST00000567379 GRIN2BQ13224 1484 aa17.04■□□□□ 0.32
VPS9D1-206ENST00000567379 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms