RNA–Protein interactions for RNA: ENST00000567306.5

PDXDC1-215, Transcript of pyridoxal dependent decarboxylase domain containing 1, humanhuman

TSL 5

Gene PDXDC1, Length 980 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDXDC1-215ENST00000567306 AEBP2Q6ZN18 517 aaPredicted RBP17.48■□□□□ 0.39
PDXDC1-215ENST00000567306 NISCHQ9Y2I1 1504 aa17.35■□□□□ 0.37
PDXDC1-215ENST00000567306 CHIC1Q5VXU3 224 aa17.01■□□□□ 0.31
PDXDC1-215ENST00000567306 CCDC180Q9P1Z9 1646 aa15.21■□□□□ 0.03
PDXDC1-215ENST00000567306 PHF23Q9BUL5 403 aaPredicted RBP14.95□□□□□ -0.02
PDXDC1-215ENST00000567306 SENP3Q9H4L4 574 aaPredicted RBP14.86□□□□□ -0.03
PDXDC1-215ENST00000567306 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
PDXDC1-215ENST00000567306 ABCC9O60706 1549 aa14.47□□□□□ -0.09
PDXDC1-215ENST00000567306 DCAF1Q9Y4B6 1507 aa14.35□□□□□ -0.11
PDXDC1-215ENST00000567306 DCAF8L2P0C7V8 631 aa14.25□□□□□ -0.13
PDXDC1-215ENST00000567306 MYO15BQ96JP2 1530 aa14.22□□□□□ -0.13
PDXDC1-215ENST00000567306 NACADO15069 1562 aa14.17□□□□□ -0.14
PDXDC1-215ENST00000567306 RB1CC1Q8TDY2 1594 aa14.08□□□□□ -0.16
PDXDC1-215ENST00000567306 SHROOM4Q9ULL8 1493 aa14.04□□□□□ -0.16
PDXDC1-215ENST00000567306 SCRIBQ14160 1630 aa13.98□□□□□ -0.17
PDXDC1-215ENST00000567306 PLPPR3Q6T4P5 718 aa13.83□□□□□ -0.2
PDXDC1-215ENST00000567306 UNC13AQ9UPW8 1703 aa13.81□□□□□ -0.2
PDXDC1-215ENST00000567306 FOXD1Q16676 465 aa13.8□□□□□ -0.2
PDXDC1-215ENST00000567306 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
PDXDC1-215ENST00000567306 PABPN1Q86U42 306 aaKnown RBP eCLIP13.58□□□□□ -0.24
PDXDC1-215ENST00000567306 CECR2Q9BXF3 1484 aa13.49□□□□□ -0.25
PDXDC1-215ENST00000567306 MROH2BQ7Z745 1585 aa13.41□□□□□ -0.26
PDXDC1-215ENST00000567306 BAZ1AQ9NRL2 1556 aaPredicted RBP13.41□□□□□ -0.26
PDXDC1-215ENST00000567306 RSF1Q96T23 1441 aaPredicted RBP13.39□□□□□ -0.27
PDXDC1-215ENST00000567306 SMARCA4P51532 1647 aa13.39□□□□□ -0.27
PDXDC1-215ENST00000567306 SUPT5HO00267 1087 aaKnown RBP13.38□□□□□ -0.27
PDXDC1-215ENST00000567306 WIZO95785 1651 aa13.3□□□□□ -0.28
PDXDC1-215ENST00000567306 ADRA2BP18089 450 aa13.28□□□□□ -0.28
PDXDC1-215ENST00000567306 EIF4G1Q04637 1599 aaKnown RBP13.28□□□□□ -0.28
PDXDC1-215ENST00000567306 PPP6R1Q9UPN7 881 aa13.23□□□□□ -0.29
PDXDC1-215ENST00000567306 PEG3Q9GZU2 1588 aa13.23□□□□□ -0.29
PDXDC1-215ENST00000567306 ATAD2BQ9ULI0 1458 aa13.17□□□□□ -0.3
PDXDC1-215ENST00000567306 TOP2AP11388 1531 aaKnown RBP13.17□□□□□ -0.3
PDXDC1-215ENST00000567306 SMARCA2P51531 1590 aa13.15□□□□□ -0.3
PDXDC1-215ENST00000567306 CC2D2AQ9P2K1 1620 aa13.1□□□□□ -0.31
PDXDC1-215ENST00000567306 BAZ1BQ9UIG0 1483 aaKnown RBP13.09□□□□□ -0.31
PDXDC1-215ENST00000567306 HMGXB3Q12766 1538 aa13.08□□□□□ -0.32
PDXDC1-215ENST00000567306 PIAS4Q8N2W9 510 aaPredicted RBP13.07□□□□□ -0.32
PDXDC1-215ENST00000567306 NCAPD3P42695 1498 aa13.06□□□□□ -0.32
PDXDC1-215ENST00000567306 CCDC88BA6NC98 1476 aa12.99□□□□□ -0.33
PDXDC1-215ENST00000567306 DNAJC5BQ9UF47 199 aa12.84□□□□□ -0.35
PDXDC1-215ENST00000567306 MSH5O43196 834 aa12.75□□□□□ -0.37
PDXDC1-215ENST00000567306 CFTRP13569 1480 aa12.75□□□□□ -0.37
PDXDC1-215ENST00000567306 ABCC8Q09428 1581 aa12.71□□□□□ -0.37
PDXDC1-215ENST00000567306 PRDM2Q13029 1718 aa12.71□□□□□ -0.38
PDXDC1-215ENST00000567306 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
PDXDC1-215ENST00000567306 NESP48681 1621 aa12.68□□□□□ -0.38
PDXDC1-215ENST00000567306 LAMC3Q9Y6N6 1575 aa12.65□□□□□ -0.38
PDXDC1-215ENST00000567306 SYNJ1O43426 1573 aa12.62□□□□□ -0.39
PDXDC1-215ENST00000567306 WRNQ14191 1432 aaPredicted RBP eCLIP12.61□□□□□ -0.39
PDXDC1-215ENST00000567306 FANCD2Q9BXW9 1451 aa12.59□□□□□ -0.39
PDXDC1-215ENST00000567306 TRIM41Q8WV44 630 aa12.58□□□□□ -0.4
PDXDC1-215ENST00000567306 CUX1P39880 1505 aa12.56□□□□□ -0.4
PDXDC1-215ENST00000567306 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
PDXDC1-215ENST00000567306 TOP2BQ02880 1626 aa12.55□□□□□ -0.4
PDXDC1-215ENST00000567306 KIF21AQ7Z4S6 1674 aa12.54□□□□□ -0.4
PDXDC1-215ENST00000567306 PDS5BQ9NTI5 1447 aa12.53□□□□□ -0.4
PDXDC1-215ENST00000567306 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
PDXDC1-215ENST00000567306 DNMBPQ6XZF7 1577 aa12.48□□□□□ -0.41
PDXDC1-215ENST00000567306 URB2Q14146 1524 aaKnown RBP12.47□□□□□ -0.41
PDXDC1-215ENST00000567306 TOPBP1Q92547 1522 aa12.45□□□□□ -0.42
PDXDC1-215ENST00000567306 FGD5Q6ZNL6 1462 aa12.43□□□□□ -0.42
PDXDC1-215ENST00000567306 MRC2Q9UBG0 1479 aa12.42□□□□□ -0.42
PDXDC1-215ENST00000567306 SOGA1O94964 1423 aa12.42□□□□□ -0.42
PDXDC1-215ENST00000567306 ERCC6Q03468 1493 aa12.4□□□□□ -0.42
PDXDC1-215ENST00000567306 THOC2Q8NI27 1593 aaKnown RBP12.39□□□□□ -0.43
PDXDC1-215ENST00000567306 RUSC2Q8N2Y8 1516 aa12.39□□□□□ -0.43
PDXDC1-215ENST00000567306 POLA1P09884 1462 aaPredicted RBP12.39□□□□□ -0.43
PDXDC1-215ENST00000567306 WDR62O43379 1518 aa12.38□□□□□ -0.43
PDXDC1-215ENST00000567306 FAM9AQ8IZU1 332 aaPredicted RBP12.37□□□□□ -0.43
PDXDC1-215ENST00000567306 EEA1Q15075 1411 aa12.34□□□□□ -0.43
PDXDC1-215ENST00000567306 RAD54L2Q9Y4B4 1467 aa12.34□□□□□ -0.43
PDXDC1-215ENST00000567306 WDR97A6NE52 1622 aa12.33□□□□□ -0.43
PDXDC1-215ENST00000567306 CUX2O14529 1486 aa12.31□□□□□ -0.44
PDXDC1-215ENST00000567306 ABCA10Q8WWZ4 1543 aa12.31□□□□□ -0.44
PDXDC1-215ENST00000567306 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
PDXDC1-215ENST00000567306 KIF27Q86VH2 1401 aa12.28□□□□□ -0.44
PDXDC1-215ENST00000567306 ABCA5Q8WWZ7 1642 aa12.26□□□□□ -0.45
PDXDC1-215ENST00000567306 LOC105371045A0A1W2PR82 267 aa12.25□□□□□ -0.45
PDXDC1-215ENST00000567306 KIF21BO75037 1637 aa12.24□□□□□ -0.45
PDXDC1-215ENST00000567306 CSRNP3Q8WYN3 585 aa12.24□□□□□ -0.45
PDXDC1-215ENST00000567306 IFT140Q96RY7 1462 aa12.23□□□□□ -0.45
PDXDC1-215ENST00000567306 EHMT2Q96KQ7 1210 aa12.21□□□□□ -0.45
PDXDC1-215ENST00000567306 PPP4R3CPQ6ZMV5 832 aa12.2□□□□□ -0.46
PDXDC1-215ENST00000567306 GOLGA3Q08378 1498 aa12.2□□□□□ -0.46
PDXDC1-215ENST00000567306 PRXQ9BXM0 1461 aa12.2□□□□□ -0.46
PDXDC1-215ENST00000567306 TDRD9Q8NDG6 1382 aaKnown RBP12.19□□□□□ -0.46
PDXDC1-215ENST00000567306 ZNF608Q9ULD9 1512 aaPredicted RBP12.19□□□□□ -0.46
PDXDC1-215ENST00000567306 RAPGEF2Q9Y4G8 1499 aa12.19□□□□□ -0.46
PDXDC1-215ENST00000567306 GAPVD1Q14C86 1478 aa12.18□□□□□ -0.46
PDXDC1-215ENST00000567306 EIF4G3O43432 1585 aaKnown RBP12.18□□□□□ -0.46
PDXDC1-215ENST00000567306 IGF1RP08069 1367 aa12.18□□□□□ -0.46
PDXDC1-215ENST00000567306 ERICH3Q5RHP9 1530 aa12.17□□□□□ -0.46
PDXDC1-215ENST00000567306 PBRM1Q86U86 1689 aa12.17□□□□□ -0.46
PDXDC1-215ENST00000567306 AQRO60306 1485 aaKnown RBP eCLIP12.15□□□□□ -0.464e-6■□□□□ 8.5
PDXDC1-215ENST00000567306 CUL7Q14999 1698 aa12.15□□□□□ -0.46
PDXDC1-215ENST00000567306 SCAF1Q9H7N4 1312 aaKnown RBP12.14□□□□□ -0.47
PDXDC1-215ENST00000567306 ADAMTS12P58397 1594 aa12.11□□□□□ -0.47
PDXDC1-215ENST00000567306 GRIN2BQ13224 1484 aa12.11□□□□□ -0.47
PDXDC1-215ENST00000567306 CARMIL1Q5VZK9 1371 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms