RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 NISCHQ9Y2I1 1504 aa26.35■■□□□ 1.81
CLN3-224ENST00000566816 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
CLN3-224ENST00000566816 ABCC9O60706 1549 aa22.41■■□□□ 1.18
CLN3-224ENST00000566816 ZCCHC6Q5VYS8 1495 aaKnown RBP21.99■■□□□ 1.11
CLN3-224ENST00000566816 MYO15BQ96JP2 1530 aa21.92■■□□□ 1.1
CLN3-224ENST00000566816 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
CLN3-224ENST00000566816 NACADO15069 1562 aa21.86■■□□□ 1.09
CLN3-224ENST00000566816 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
CLN3-224ENST00000566816 RB1CC1Q8TDY2 1594 aa21.75■■□□□ 1.07
CLN3-224ENST00000566816 SCRIBQ14160 1630 aa21.12■□□□□ 0.97
CLN3-224ENST00000566816 UNC13AQ9UPW8 1703 aa21.08■□□□□ 0.97
CLN3-224ENST00000566816 BICRAQ9NZM4 1560 aa21.05■□□□□ 0.96
CLN3-224ENST00000566816 PABPN1Q86U42 306 aaKnown RBP eCLIP21.04■□□□□ 0.96
CLN3-224ENST00000566816 SHROOM4Q9ULL8 1493 aa21.01■□□□□ 0.95
CLN3-224ENST00000566816 EIF4G1Q04637 1599 aaKnown RBP20.48■□□□□ 0.87
CLN3-224ENST00000566816 CECR2Q9BXF3 1484 aa20.44■□□□□ 0.86
CLN3-224ENST00000566816 BAZ1AQ9NRL2 1556 aaPredicted RBP20.39■□□□□ 0.85
CLN3-224ENST00000566816 DNAJC5BQ9UF47 199 aa20.38■□□□□ 0.85
CLN3-224ENST00000566816 SMARCA4P51532 1647 aa20.31■□□□□ 0.84
CLN3-224ENST00000566816 CC2D2AQ9P2K1 1620 aa20.28■□□□□ 0.84
CLN3-224ENST00000566816 MROH2BQ7Z745 1585 aa20.25■□□□□ 0.83
CLN3-224ENST00000566816 NCAPD3P42695 1498 aa20.22■□□□□ 0.83
CLN3-224ENST00000566816 ATAD2BQ9ULI0 1458 aa20.21■□□□□ 0.83
CLN3-224ENST00000566816 RSF1Q96T23 1441 aaPredicted RBP20.2■□□□□ 0.82
CLN3-224ENST00000566816 PEG3Q9GZU2 1588 aa20.2■□□□□ 0.82
CLN3-224ENST00000566816 SMARCA2P51531 1590 aa20.19■□□□□ 0.82
CLN3-224ENST00000566816 HMGXB3Q12766 1538 aa20.07■□□□□ 0.8
CLN3-224ENST00000566816 BAZ1BQ9UIG0 1483 aaKnown RBP20.01■□□□□ 0.79
CLN3-224ENST00000566816 WIZO95785 1651 aa19.98■□□□□ 0.79
CLN3-224ENST00000566816 TOP2AP11388 1531 aaKnown RBP19.87■□□□□ 0.77
CLN3-224ENST00000566816 SUPT5HO00267 1087 aaKnown RBP19.85■□□□□ 0.77
CLN3-224ENST00000566816 CCDC88BA6NC98 1476 aa19.67■□□□□ 0.74
CLN3-224ENST00000566816 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
CLN3-224ENST00000566816 CFTRP13569 1480 aa19.55■□□□□ 0.72
CLN3-224ENST00000566816 LAMC3Q9Y6N6 1575 aa19.55■□□□□ 0.72
CLN3-224ENST00000566816 PDS5BQ9NTI5 1447 aa19.48■□□□□ 0.71
CLN3-224ENST00000566816 NESP48681 1621 aa19.47■□□□□ 0.71
CLN3-224ENST00000566816 FANCD2Q9BXW9 1451 aa19.33■□□□□ 0.68
CLN3-224ENST00000566816 ERCC6Q03468 1493 aa19.32■□□□□ 0.68
CLN3-224ENST00000566816 CEP164Q9UPV0 1460 aa19.26■□□□□ 0.67
CLN3-224ENST00000566816 PRDM2Q13029 1718 aa19.23■□□□□ 0.67
CLN3-224ENST00000566816 MRC2Q9UBG0 1479 aa19.18■□□□□ 0.66
CLN3-224ENST00000566816 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
CLN3-224ENST00000566816 KIF21AQ7Z4S6 1674 aa19.17■□□□□ 0.66
CLN3-224ENST00000566816 THOC2Q8NI27 1593 aaKnown RBP19.1■□□□□ 0.65
CLN3-224ENST00000566816 WDR62O43379 1518 aa19.1■□□□□ 0.65
CLN3-224ENST00000566816 CUX2O14529 1486 aa19.09■□□□□ 0.65
CLN3-224ENST00000566816 URB2Q14146 1524 aaKnown RBP19.08■□□□□ 0.64
CLN3-224ENST00000566816 TOPBP1Q92547 1522 aa19.04■□□□□ 0.64
CLN3-224ENST00000566816 DNMBPQ6XZF7 1577 aa19.03■□□□□ 0.64
CLN3-224ENST00000566816 WRNQ14191 1432 aaPredicted RBP eCLIP19.03■□□□□ 0.64
CLN3-224ENST00000566816 CUX1P39880 1505 aa18.98■□□□□ 0.63
CLN3-224ENST00000566816 TOP2BQ02880 1626 aa18.91■□□□□ 0.62
CLN3-224ENST00000566816 POLA1P09884 1462 aaPredicted RBP18.9■□□□□ 0.62
CLN3-224ENST00000566816 IFT140Q96RY7 1462 aa18.9■□□□□ 0.62
CLN3-224ENST00000566816 SOGA1O94964 1423 aa18.88■□□□□ 0.61
CLN3-224ENST00000566816 FGD5Q6ZNL6 1462 aa18.88■□□□□ 0.61
CLN3-224ENST00000566816 BIVM-ERCC5R4GMW8 1640 aa18.87■□□□□ 0.61
CLN3-224ENST00000566816 SYNJ1O43426 1573 aa18.86■□□□□ 0.61
CLN3-224ENST00000566816 TRIM41Q8WV44 630 aa18.82■□□□□ 0.6
CLN3-224ENST00000566816 CHIC1Q5VXU3 224 aa18.79■□□□□ 0.6
CLN3-224ENST00000566816 TARBP1Q13395 1621 aaKnown RBP18.78■□□□□ 0.6
CLN3-224ENST00000566816 RAD54L2Q9Y4B4 1467 aa18.78■□□□□ 0.6
CLN3-224ENST00000566816 ABCA10Q8WWZ4 1543 aa18.77■□□□□ 0.6
CLN3-224ENST00000566816 WDR97A6NE52 1622 aa18.74■□□□□ 0.59
CLN3-224ENST00000566816 ZNF608Q9ULD9 1512 aaPredicted RBP18.69■□□□□ 0.58
CLN3-224ENST00000566816 TDRD9Q8NDG6 1382 aaKnown RBP18.69■□□□□ 0.58
CLN3-224ENST00000566816 AQRO60306 1485 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLN3-224ENST00000566816 KIF27Q86VH2 1401 aa18.64■□□□□ 0.57
CLN3-224ENST00000566816 GAPVD1Q14C86 1478 aa18.64■□□□□ 0.57
CLN3-224ENST00000566816 GRIN2BQ13224 1484 aa18.61■□□□□ 0.57
CLN3-224ENST00000566816 EIF4G3O43432 1585 aaKnown RBP18.59■□□□□ 0.57
CLN3-224ENST00000566816 ABCA5Q8WWZ7 1642 aa18.58■□□□□ 0.56
CLN3-224ENST00000566816 IGF1RP08069 1367 aa18.56■□□□□ 0.56
CLN3-224ENST00000566816 ERICH3Q5RHP9 1530 aa18.55■□□□□ 0.56
CLN3-224ENST00000566816 MAGI1Q96QZ7 1491 aaPredicted RBP18.53■□□□□ 0.56
CLN3-224ENST00000566816 EEA1Q15075 1411 aa18.53■□□□□ 0.56
CLN3-224ENST00000566816 FHAD1B1AJZ9 1412 aa18.48■□□□□ 0.55
CLN3-224ENST00000566816 SNAPC4Q5SXM2 1469 aa18.47■□□□□ 0.55
CLN3-224ENST00000566816 CSRNP3Q8WYN3 585 aa18.46■□□□□ 0.55
CLN3-224ENST00000566816 RUSC2Q8N2Y8 1516 aa18.45■□□□□ 0.54
CLN3-224ENST00000566816 CHMP7Q8WUX9 453 aaPredicted RBP18.45■□□□□ 0.54
CLN3-224ENST00000566816 SYNJ2O15056 1496 aa18.45■□□□□ 0.54
CLN3-224ENST00000566816 CARMIL1Q5VZK9 1371 aa18.43■□□□□ 0.54
CLN3-224ENST00000566816 PBRM1Q86U86 1689 aa18.42■□□□□ 0.54
CLN3-224ENST00000566816 OSCARQ8IYS5 282 aa18.41■□□□□ 0.54
CLN3-224ENST00000566816 FBLN2P98095 1184 aa18.38■□□□□ 0.53
CLN3-224ENST00000566816 ADAMTS12P58397 1594 aa18.37■□□□□ 0.53
CLN3-224ENST00000566816 CUL7Q14999 1698 aa18.37■□□□□ 0.53
CLN3-224ENST00000566816 PRXQ9BXM0 1461 aa18.36■□□□□ 0.53
CLN3-224ENST00000566816 GRIN2AQ12879 1464 aa18.34■□□□□ 0.53
CLN3-224ENST00000566816 RAPGEF2Q9Y4G8 1499 aa18.33■□□□□ 0.52
CLN3-224ENST00000566816 FAM9AQ8IZU1 332 aaPredicted RBP18.3■□□□□ 0.52
CLN3-224ENST00000566816 NUP160Q12769 1436 aa18.29■□□□□ 0.52
CLN3-224ENST00000566816 CHD1O14646 1710 aa18.23■□□□□ 0.51
CLN3-224ENST00000566816 DNAJC5Q9H3Z4 198 aa18.21■□□□□ 0.51
CLN3-224ENST00000566816 KIAA0586Q9BVV6 1533 aa18.21■□□□□ 0.51
CLN3-224ENST00000566816 KIF21BO75037 1637 aa18.19■□□□□ 0.5
CLN3-224ENST00000566816 CLASP1Q7Z460 1538 aa18.18■□□□□ 0.5
CLN3-224ENST00000566816 CEP170Q5SW79 1584 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms