RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 NISCHQ9Y2I1 1504 aa24.01■■□□□ 1.43
SMPD3-206ENST00000566009 ABCC9O60706 1549 aa23.3■■□□□ 1.32
SMPD3-206ENST00000566009 DNAJC5BQ9UF47 199 aa23.05■■□□□ 1.28
SMPD3-206ENST00000566009 DNAJC5Q9H3Z4 198 aa22.04■■□□□ 1.12
SMPD3-206ENST00000566009 CCDC180Q9P1Z9 1646 aa21.98■■□□□ 1.11
SMPD3-206ENST00000566009 RB1CC1Q8TDY2 1594 aa21.57■■□□□ 1.04
SMPD3-206ENST00000566009 PABPN1Q86U42 306 aaKnown RBP eCLIP21.57■■□□□ 1.04
SMPD3-206ENST00000566009 NACADO15069 1562 aa21.14■□□□□ 0.98
SMPD3-206ENST00000566009 CECR2Q9BXF3 1484 aa21.12■□□□□ 0.97
SMPD3-206ENST00000566009 UNC13AQ9UPW8 1703 aa21.04■□□□□ 0.96
SMPD3-206ENST00000566009 BICRAQ9NZM4 1560 aa21.02■□□□□ 0.96
SMPD3-206ENST00000566009 CC2D2AQ9P2K1 1620 aa20.94■□□□□ 0.94
SMPD3-206ENST00000566009 DCAF8L2P0C7V8 631 aa20.92■□□□□ 0.94
SMPD3-206ENST00000566009 EIF4G1Q04637 1599 aaKnown RBP20.59■□□□□ 0.89
SMPD3-206ENST00000566009 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
SMPD3-206ENST00000566009 CUX2O14529 1486 aa20.56■□□□□ 0.88
SMPD3-206ENST00000566009 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
SMPD3-206ENST00000566009 MYO15BQ96JP2 1530 aa20.44■□□□□ 0.86
SMPD3-206ENST00000566009 ERCC6Q03468 1493 aa20.18■□□□□ 0.82
SMPD3-206ENST00000566009 SCRIBQ14160 1630 aa20.05■□□□□ 0.8
SMPD3-206ENST00000566009 DCAF1Q9Y4B6 1507 aa19.72■□□□□ 0.75
SMPD3-206ENST00000566009 NESP48681 1621 aa19.67■□□□□ 0.74
SMPD3-206ENST00000566009 AEBP2Q6ZN18 517 aaPredicted RBP19.66■□□□□ 0.74
SMPD3-206ENST00000566009 THOC2Q8NI27 1593 aaKnown RBP19.64■□□□□ 0.73
SMPD3-206ENST00000566009 ZCCHC6Q5VYS8 1495 aaKnown RBP19.6■□□□□ 0.73
SMPD3-206ENST00000566009 NCAPD3P42695 1498 aa19.59■□□□□ 0.73
SMPD3-206ENST00000566009 OSCARQ8IYS5 282 aa19.5■□□□□ 0.71
SMPD3-206ENST00000566009 SMARCA2P51531 1590 aa19.44■□□□□ 0.7
SMPD3-206ENST00000566009 BAZ1AQ9NRL2 1556 aaPredicted RBP19.37■□□□□ 0.69
SMPD3-206ENST00000566009 ATAD2BQ9ULI0 1458 aa19.34■□□□□ 0.69
SMPD3-206ENST00000566009 TRHP20396 242 aaPredicted RBP19.32■□□□□ 0.68
SMPD3-206ENST00000566009 KIF21AQ7Z4S6 1674 aa19.29■□□□□ 0.68
SMPD3-206ENST00000566009 RIMBP3CA6NJZ7 1639 aa19.29■□□□□ 0.68
SMPD3-206ENST00000566009 RIMBP3BA6NNM3 1639 aa19.29■□□□□ 0.68
SMPD3-206ENST00000566009 RIMBP3Q9UFD9 1639 aa19.29■□□□□ 0.68
SMPD3-206ENST00000566009 LAMC3Q9Y6N6 1575 aa19.28■□□□□ 0.68
SMPD3-206ENST00000566009 PDS5BQ9NTI5 1447 aa19.25■□□□□ 0.67
SMPD3-206ENST00000566009 HMGXB3Q12766 1538 aa19.25■□□□□ 0.67
SMPD3-206ENST00000566009 CYB5RLQ6IPT4 315 aa19.15■□□□□ 0.66
SMPD3-206ENST00000566009 MRC2Q9UBG0 1479 aa19.14■□□□□ 0.65
SMPD3-206ENST00000566009 ARHGEF11O15085 1522 aa19.11■□□□□ 0.65
SMPD3-206ENST00000566009 WDR62O43379 1518 aa19.11■□□□□ 0.65
SMPD3-206ENST00000566009 ILDR1Q86SU0 546 aaPredicted RBP19.07■□□□□ 0.64
SMPD3-206ENST00000566009 BAZ1BQ9UIG0 1483 aaKnown RBP19.06■□□□□ 0.64
SMPD3-206ENST00000566009 SMARCA4P51532 1647 aa18.96■□□□□ 0.63
SMPD3-206ENST00000566009 CADPSQ9ULU8 1353 aa18.94■□□□□ 0.62
SMPD3-206ENST00000566009 ARAP1Q96P48 1450 aa18.85■□□□□ 0.61
SMPD3-206ENST00000566009 CEP164Q9UPV0 1460 aa18.81■□□□□ 0.6
SMPD3-206ENST00000566009 PEG3Q9GZU2 1588 aa18.77■□□□□ 0.6
SMPD3-206ENST00000566009 FANCD2Q9BXW9 1451 aa18.71■□□□□ 0.59
SMPD3-206ENST00000566009 URB2Q14146 1524 aaKnown RBP18.62■□□□□ 0.57
SMPD3-206ENST00000566009 ZNF608Q9ULD9 1512 aaPredicted RBP18.61■□□□□ 0.57
SMPD3-206ENST00000566009 RSF1Q96T23 1441 aaPredicted RBP18.6■□□□□ 0.57
SMPD3-206ENST00000566009 MROH2BQ7Z745 1585 aa18.51■□□□□ 0.55
SMPD3-206ENST00000566009 IFT140Q96RY7 1462 aa18.5■□□□□ 0.55
SMPD3-206ENST00000566009 FBLN2P98095 1184 aa18.47■□□□□ 0.55
SMPD3-206ENST00000566009 CHD1O14646 1710 aa18.46■□□□□ 0.55
SMPD3-206ENST00000566009 CFTRP13569 1480 aa18.45■□□□□ 0.54
SMPD3-206ENST00000566009 KDM4FA0A1W2PPD8 638 aa18.38■□□□□ 0.53
SMPD3-206ENST00000566009 EIF4G3O43432 1585 aaKnown RBP18.38■□□□□ 0.53
SMPD3-206ENST00000566009 AQRO60306 1485 aaKnown RBP eCLIP18.31■□□□□ 0.52
SMPD3-206ENST00000566009 CLASP1Q7Z460 1538 aa18.25■□□□□ 0.51
SMPD3-206ENST00000566009 GAPVD1Q14C86 1478 aa18.2■□□□□ 0.5
SMPD3-206ENST00000566009 TOPBP1Q92547 1522 aa18.2■□□□□ 0.5
SMPD3-206ENST00000566009 WIZO95785 1651 aa18.19■□□□□ 0.5
SMPD3-206ENST00000566009 FBXO41Q8TF61 875 aa18.13■□□□□ 0.49
SMPD3-206ENST00000566009 CHMP7Q8WUX9 453 aaPredicted RBP18.13■□□□□ 0.49
SMPD3-206ENST00000566009 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
SMPD3-206ENST00000566009 TARBP1Q13395 1621 aaKnown RBP18.11■□□□□ 0.49
SMPD3-206ENST00000566009 ABCC8Q09428 1581 aa18.08■□□□□ 0.48
SMPD3-206ENST00000566009 KIF13AQ9H1H9 1805 aa18.05■□□□□ 0.48
SMPD3-206ENST00000566009 ERCC6L2Q5T890 1561 aa18.05■□□□□ 0.48
SMPD3-206ENST00000566009 SNAPC4Q5SXM2 1469 aa18.05■□□□□ 0.48
SMPD3-206ENST00000566009 PRDM2Q13029 1718 aa18.02■□□□□ 0.48
SMPD3-206ENST00000566009 TDRD9Q8NDG6 1382 aaKnown RBP18.02■□□□□ 0.47
SMPD3-206ENST00000566009 LMTK3Q96Q04 1460 aa18■□□□□ 0.47
SMPD3-206ENST00000566009 DNMBPQ6XZF7 1577 aa17.99■□□□□ 0.47
SMPD3-206ENST00000566009 HECW2Q9P2P5 1572 aa17.99■□□□□ 0.47
SMPD3-206ENST00000566009 FAM69CQ0P6D2 419 aa17.95■□□□□ 0.46
SMPD3-206ENST00000566009 POLA1P09884 1462 aaPredicted RBP17.94■□□□□ 0.46
SMPD3-206ENST00000566009 SOCS7O14512 581 aa17.93■□□□□ 0.46
SMPD3-206ENST00000566009 MAGI1Q96QZ7 1491 aaPredicted RBP17.93■□□□□ 0.46
SMPD3-206ENST00000566009 RAD54L2Q9Y4B4 1467 aa17.93■□□□□ 0.46
SMPD3-206ENST00000566009 SYNJ2O15056 1496 aa17.9■□□□□ 0.46
SMPD3-206ENST00000566009 KDM6BO15054 1643 aa17.9■□□□□ 0.46
SMPD3-206ENST00000566009 SOGA1O94964 1423 aa17.88■□□□□ 0.45
SMPD3-206ENST00000566009 TOP2AP11388 1531 aaKnown RBP17.86■□□□□ 0.45
SMPD3-206ENST00000566009 ADGRL1O94910 1474 aa17.85■□□□□ 0.45
SMPD3-206ENST00000566009 ABCC10Q5T3U5 1492 aa17.85■□□□□ 0.45
SMPD3-206ENST00000566009 ILDR2Q71H61 639 aa17.85■□□□□ 0.45
SMPD3-206ENST00000566009 GRIN2BQ13224 1484 aa17.82■□□□□ 0.44
SMPD3-206ENST00000566009 WDR97A6NE52 1622 aa17.8■□□□□ 0.44
SMPD3-206ENST00000566009 CEP170Q5SW79 1584 aa17.74■□□□□ 0.43
SMPD3-206ENST00000566009 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
SMPD3-206ENST00000566009 DIP2BQ9P265 1576 aa17.72■□□□□ 0.43
SMPD3-206ENST00000566009 NPM1P06748 294 aaKnown RBP eCLIP17.71■□□□□ 0.43
SMPD3-206ENST00000566009 DISP3Q9P2K9 1392 aa17.66■□□□□ 0.42
SMPD3-206ENST00000566009 TSPOAP1O95153 1857 aa17.66■□□□□ 0.42
SMPD3-206ENST00000566009 MAPKBP1O60336 1514 aa17.66■□□□□ 0.42
SMPD3-206ENST00000566009 FGD5Q6ZNL6 1462 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms