RNA–Protein interactions for RNA: ENST00000565887.1

SHCBP1-204, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 5

Gene SHCBP1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-204ENST00000565887 NISCHQ9Y2I1 1504 aa30.11■■■□□ 2.41
SHCBP1-204ENST00000565887 CCDC180Q9P1Z9 1646 aa26.69■■□□□ 1.86
SHCBP1-204ENST00000565887 ABCC9O60706 1549 aa25.94■■□□□ 1.74
SHCBP1-204ENST00000565887 DCAF8L2P0C7V8 631 aa25.18■■□□□ 1.62
SHCBP1-204ENST00000565887 NACADO15069 1562 aa25.13■■□□□ 1.61
SHCBP1-204ENST00000565887 RB1CC1Q8TDY2 1594 aa25.1■■□□□ 1.61
SHCBP1-204ENST00000565887 ZCCHC6Q5VYS8 1495 aaKnown RBP25.07■■□□□ 1.6
SHCBP1-204ENST00000565887 MYO15BQ96JP2 1530 aa25.07■■□□□ 1.6
SHCBP1-204ENST00000565887 DCAF1Q9Y4B6 1507 aa24.97■■□□□ 1.59
SHCBP1-204ENST00000565887 UNC13AQ9UPW8 1703 aa24.38■■□□□ 1.49
SHCBP1-204ENST00000565887 PABPN1Q86U42 306 aaKnown RBP eCLIP24.31■■□□□ 1.48
SHCBP1-204ENST00000565887 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
SHCBP1-204ENST00000565887 BICRAQ9NZM4 1560 aa24.23■■□□□ 1.47
SHCBP1-204ENST00000565887 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
SHCBP1-204ENST00000565887 DNAJC5BQ9UF47 199 aa23.7■■□□□ 1.38
SHCBP1-204ENST00000565887 EIF4G1Q04637 1599 aaKnown RBP23.62■■□□□ 1.37
SHCBP1-204ENST00000565887 CC2D2AQ9P2K1 1620 aa23.48■■□□□ 1.35
SHCBP1-204ENST00000565887 CECR2Q9BXF3 1484 aa23.37■■□□□ 1.33
SHCBP1-204ENST00000565887 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
SHCBP1-204ENST00000565887 SMARCA4P51532 1647 aa23.29■■□□□ 1.32
SHCBP1-204ENST00000565887 SMARCA2P51531 1590 aa23.19■■□□□ 1.3
SHCBP1-204ENST00000565887 NCAPD3P42695 1498 aa23.19■■□□□ 1.3
SHCBP1-204ENST00000565887 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
SHCBP1-204ENST00000565887 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.3
SHCBP1-204ENST00000565887 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
SHCBP1-204ENST00000565887 HMGXB3Q12766 1538 aa23.04■■□□□ 1.28
SHCBP1-204ENST00000565887 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
SHCBP1-204ENST00000565887 RSF1Q96T23 1441 aaPredicted RBP22.99■■□□□ 1.27
SHCBP1-204ENST00000565887 WIZO95785 1651 aa22.88■■□□□ 1.25
SHCBP1-204ENST00000565887 TOP2AP11388 1531 aaKnown RBP22.7■■□□□ 1.22
SHCBP1-204ENST00000565887 CADPSQ9ULU8 1353 aa22.54■■□□□ 1.2
SHCBP1-204ENST00000565887 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
SHCBP1-204ENST00000565887 LAMC3Q9Y6N6 1575 aa22.53■■□□□ 1.2
SHCBP1-204ENST00000565887 CCDC88BA6NC98 1476 aa22.46■■□□□ 1.19
SHCBP1-204ENST00000565887 NESP48681 1621 aa22.46■■□□□ 1.19
SHCBP1-204ENST00000565887 PDS5BQ9NTI5 1447 aa22.45■■□□□ 1.18
SHCBP1-204ENST00000565887 ERCC6Q03468 1493 aa22.42■■□□□ 1.18
SHCBP1-204ENST00000565887 CFTRP13569 1480 aa22.39■■□□□ 1.17
SHCBP1-204ENST00000565887 FANCD2Q9BXW9 1451 aa22.22■■□□□ 1.15
SHCBP1-204ENST00000565887 CEP164Q9UPV0 1460 aa22.18■■□□□ 1.14
SHCBP1-204ENST00000565887 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
SHCBP1-204ENST00000565887 CUX2O14529 1486 aa22.16■■□□□ 1.14
SHCBP1-204ENST00000565887 PRDM2Q13029 1718 aa22.15■■□□□ 1.14
SHCBP1-204ENST00000565887 MRC2Q9UBG0 1479 aa22.11■■□□□ 1.13
SHCBP1-204ENST00000565887 THOC2Q8NI27 1593 aaKnown RBP22.08■■□□□ 1.12
SHCBP1-204ENST00000565887 WDR62O43379 1518 aa22.01■■□□□ 1.11
SHCBP1-204ENST00000565887 ABCC8Q09428 1581 aa22■■□□□ 1.11
SHCBP1-204ENST00000565887 URB2Q14146 1524 aaKnown RBP21.93■■□□□ 1.1
SHCBP1-204ENST00000565887 TOPBP1Q92547 1522 aa21.85■■□□□ 1.09
SHCBP1-204ENST00000565887 DNMBPQ6XZF7 1577 aa21.85■■□□□ 1.09
SHCBP1-204ENST00000565887 IFT140Q96RY7 1462 aa21.74■■□□□ 1.07
SHCBP1-204ENST00000565887 CUX1P39880 1505 aa21.7■■□□□ 1.07
SHCBP1-204ENST00000565887 WRNQ14191 1432 aaPredicted RBP eCLIP21.7■■□□□ 1.06
SHCBP1-204ENST00000565887 POLA1P09884 1462 aaPredicted RBP21.67■■□□□ 1.06
SHCBP1-204ENST00000565887 SOGA1O94964 1423 aa21.67■■□□□ 1.06
SHCBP1-204ENST00000565887 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.05
SHCBP1-204ENST00000565887 TOP2BQ02880 1626 aa21.59■■□□□ 1.05
SHCBP1-204ENST00000565887 TARBP1Q13395 1621 aaKnown RBP21.58■■□□□ 1.04
SHCBP1-204ENST00000565887 BIVM-ERCC5R4GMW8 1640 aa21.56■■□□□ 1.04
SHCBP1-204ENST00000565887 RAD54L2Q9Y4B4 1467 aa21.56■■□□□ 1.04
SHCBP1-204ENST00000565887 ZNF608Q9ULD9 1512 aaPredicted RBP21.53■■□□□ 1.04
SHCBP1-204ENST00000565887 WDR97A6NE52 1622 aa21.52■■□□□ 1.04
SHCBP1-204ENST00000565887 SYNJ1O43426 1573 aa21.52■■□□□ 1.04
SHCBP1-204ENST00000565887 AQRO60306 1485 aaKnown RBP eCLIP21.48■■□□□ 1.03
SHCBP1-204ENST00000565887 ABCA10Q8WWZ4 1543 aa21.48■■□□□ 1.03
SHCBP1-204ENST00000565887 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
SHCBP1-204ENST00000565887 EIF4G3O43432 1585 aaKnown RBP21.44■■□□□ 1.02
SHCBP1-204ENST00000565887 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.02
SHCBP1-204ENST00000565887 GRIN2BQ13224 1484 aa21.39■■□□□ 1.01
SHCBP1-204ENST00000565887 DNAJC5Q9H3Z4 198 aa21.37■■□□□ 1.01
SHCBP1-204ENST00000565887 OSCARQ8IYS5 282 aa21.36■■□□□ 1.01
SHCBP1-204ENST00000565887 TRIM41Q8WV44 630 aa21.36■■□□□ 1.01
SHCBP1-204ENST00000565887 MAGI1Q96QZ7 1491 aaPredicted RBP21.32■■□□□ 1
SHCBP1-204ENST00000565887 ABCA5Q8WWZ7 1642 aa21.3■■□□□ 1
SHCBP1-204ENST00000565887 CHMP7Q8WUX9 453 aaPredicted RBP21.28■■□□□ 1
SHCBP1-204ENST00000565887 KIF27Q86VH2 1401 aa21.28■■□□□ 1
SHCBP1-204ENST00000565887 FBLN2P98095 1184 aa21.27■■□□□ 1
SHCBP1-204ENST00000565887 SNAPC4Q5SXM2 1469 aa21.26■□□□□ 0.99
SHCBP1-204ENST00000565887 ERICH3Q5RHP9 1530 aa21.24■□□□□ 0.99
SHCBP1-204ENST00000565887 PBRM1Q86U86 1689 aa21.23■□□□□ 0.99
SHCBP1-204ENST00000565887 SYNJ2O15056 1496 aa21.21■□□□□ 0.99
SHCBP1-204ENST00000565887 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
SHCBP1-204ENST00000565887 IGF1RP08069 1367 aa21.16■□□□□ 0.98
SHCBP1-204ENST00000565887 CHIC1Q5VXU3 224 aa21.13■□□□□ 0.97
SHCBP1-204ENST00000565887 CHD1O14646 1710 aa21.12■□□□□ 0.97
SHCBP1-204ENST00000565887 ADAMTS12P58397 1594 aa21.09■□□□□ 0.97
SHCBP1-204ENST00000565887 GRIN2AQ12879 1464 aa21.07■□□□□ 0.96
SHCBP1-204ENST00000565887 CARMIL1Q5VZK9 1371 aa21.05■□□□□ 0.96
SHCBP1-204ENST00000565887 CUL7Q14999 1698 aa21.05■□□□□ 0.96
SHCBP1-204ENST00000565887 EEA1Q15075 1411 aa21.01■□□□□ 0.95
SHCBP1-204ENST00000565887 NUP160Q12769 1436 aa20.98■□□□□ 0.95
SHCBP1-204ENST00000565887 RUSC2Q8N2Y8 1516 aa20.98■□□□□ 0.95
SHCBP1-204ENST00000565887 CSRNP3Q8WYN3 585 aa20.96■□□□□ 0.95
SHCBP1-204ENST00000565887 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
SHCBP1-204ENST00000565887 RAPGEF2Q9Y4G8 1499 aa20.92■□□□□ 0.94
SHCBP1-204ENST00000565887 CEP170Q5SW79 1584 aa20.89■□□□□ 0.93
SHCBP1-204ENST00000565887 JPH4Q96JJ6 628 aa20.87■□□□□ 0.93
SHCBP1-204ENST00000565887 KIAA0586Q9BVV6 1533 aa20.86■□□□□ 0.93
SHCBP1-204ENST00000565887 ARHGEF11O15085 1522 aa20.85■□□□□ 0.93
SHCBP1-204ENST00000565887 PRXQ9BXM0 1461 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms