RNA–Protein interactions for RNA: ENST00000565810.1

CDH1-208, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 282 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-208ENST00000565810 NISCHQ9Y2I1 1504 aa18.13■□□□□ 0.49
CDH1-208ENST00000565810 CCDC180Q9P1Z9 1646 aa15.88■□□□□ 0.13
CDH1-208ENST00000565810 ABCC9O60706 1549 aa15.4■□□□□ 0.06
CDH1-208ENST00000565810 DCAF8L2P0C7V8 631 aa15.2■□□□□ 0.02
CDH1-208ENST00000565810 ZCCHC6Q5VYS8 1495 aaKnown RBP15.14■□□□□ 0.01
CDH1-208ENST00000565810 DCAF1Q9Y4B6 1507 aa15□□□□□ -0.01
CDH1-208ENST00000565810 NACADO15069 1562 aa14.96□□□□□ -0.01
CDH1-208ENST00000565810 MYO15BQ96JP2 1530 aa14.96□□□□□ -0.02
CDH1-208ENST00000565810 RB1CC1Q8TDY2 1594 aa14.9□□□□□ -0.02
CDH1-208ENST00000565810 SHROOM4Q9ULL8 1493 aa14.58□□□□□ -0.08
CDH1-208ENST00000565810 SCRIBQ14160 1630 aa14.58□□□□□ -0.08
CDH1-208ENST00000565810 PABPN1Q86U42 306 aaKnown RBP eCLIP14.51□□□□□ -0.09
CDH1-208ENST00000565810 UNC13AQ9UPW8 1703 aa14.38□□□□□ -0.11
CDH1-208ENST00000565810 BICRAQ9NZM4 1560 aa14.37□□□□□ -0.11
CDH1-208ENST00000565810 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
CDH1-208ENST00000565810 BAZ1AQ9NRL2 1556 aaPredicted RBP14.03□□□□□ -0.16
CDH1-208ENST00000565810 EIF4G1Q04637 1599 aaKnown RBP14.02□□□□□ -0.16
CDH1-208ENST00000565810 SMARCA4P51532 1647 aa13.96□□□□□ -0.17
CDH1-208ENST00000565810 MROH2BQ7Z745 1585 aa13.96□□□□□ -0.18
CDH1-208ENST00000565810 RSF1Q96T23 1441 aaPredicted RBP13.95□□□□□ -0.18
CDH1-208ENST00000565810 SUPT5HO00267 1087 aaKnown RBP13.92□□□□□ -0.18
CDH1-208ENST00000565810 DNAJC5BQ9UF47 199 aa13.89□□□□□ -0.19
CDH1-208ENST00000565810 ATAD2BQ9ULI0 1458 aa13.88□□□□□ -0.19
CDH1-208ENST00000565810 CC2D2AQ9P2K1 1620 aa13.88□□□□□ -0.19
CDH1-208ENST00000565810 SMARCA2P51531 1590 aa13.86□□□□□ -0.19
CDH1-208ENST00000565810 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
CDH1-208ENST00000565810 PEG3Q9GZU2 1588 aa13.81□□□□□ -0.2
CDH1-208ENST00000565810 BAZ1BQ9UIG0 1483 aaKnown RBP13.79□□□□□ -0.2
CDH1-208ENST00000565810 WIZO95785 1651 aa13.78□□□□□ -0.2
CDH1-208ENST00000565810 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
CDH1-208ENST00000565810 TOP2AP11388 1531 aaKnown RBP13.69□□□□□ -0.22
CDH1-208ENST00000565810 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
CDH1-208ENST00000565810 CADPSQ9ULU8 1353 aa13.48□□□□□ -0.25
CDH1-208ENST00000565810 CFTRP13569 1480 aa13.42□□□□□ -0.26
CDH1-208ENST00000565810 PDS5BQ9NTI5 1447 aa13.38□□□□□ -0.27
CDH1-208ENST00000565810 LAMC3Q9Y6N6 1575 aa13.37□□□□□ -0.27
CDH1-208ENST00000565810 NESP48681 1621 aa13.37□□□□□ -0.27
CDH1-208ENST00000565810 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
CDH1-208ENST00000565810 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
CDH1-208ENST00000565810 CEP164Q9UPV0 1460 aa13.25□□□□□ -0.29
CDH1-208ENST00000565810 WRNQ14191 1432 aaPredicted RBP eCLIP13.17□□□□□ -0.3
CDH1-208ENST00000565810 PRDM2Q13029 1718 aa13.16□□□□□ -0.3
CDH1-208ENST00000565810 MRC2Q9UBG0 1479 aa13.16□□□□□ -0.3
CDH1-208ENST00000565810 ABCC8Q09428 1581 aa13.15□□□□□ -0.3
CDH1-208ENST00000565810 TRIM41Q8WV44 630 aa13.15□□□□□ -0.3
CDH1-208ENST00000565810 CHIC1Q5VXU3 224 aa13.13□□□□□ -0.31
CDH1-208ENST00000565810 KIF21AQ7Z4S6 1674 aa13.12□□□□□ -0.31
CDH1-208ENST00000565810 URB2Q14146 1524 aaKnown RBP13.1□□□□□ -0.31
CDH1-208ENST00000565810 TOPBP1Q92547 1522 aa13.08□□□□□ -0.31
CDH1-208ENST00000565810 CUX1P39880 1505 aa13.08□□□□□ -0.32
CDH1-208ENST00000565810 DNMBPQ6XZF7 1577 aa13.07□□□□□ -0.32
CDH1-208ENST00000565810 WDR62O43379 1518 aa13.07□□□□□ -0.32
CDH1-208ENST00000565810 THOC2Q8NI27 1593 aaKnown RBP13.04□□□□□ -0.32
CDH1-208ENST00000565810 SYNJ1O43426 1573 aa13.03□□□□□ -0.32
CDH1-208ENST00000565810 TOP2BQ02880 1626 aa13.02□□□□□ -0.32
CDH1-208ENST00000565810 SOGA1O94964 1423 aa13.02□□□□□ -0.33
CDH1-208ENST00000565810 FGD5Q6ZNL6 1462 aa13.01□□□□□ -0.33
CDH1-208ENST00000565810 CUX2O14529 1486 aa13□□□□□ -0.33
CDH1-208ENST00000565810 POLA1P09884 1462 aaPredicted RBP13□□□□□ -0.33
CDH1-208ENST00000565810 AEBP2Q6ZN18 517 aaPredicted RBP13□□□□□ -0.33
CDH1-208ENST00000565810 BIVM-ERCC5R4GMW8 1640 aa12.98□□□□□ -0.33
CDH1-208ENST00000565810 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
CDH1-208ENST00000565810 RAD54L2Q9Y4B4 1467 aa12.96□□□□□ -0.34
CDH1-208ENST00000565810 ABCA10Q8WWZ4 1543 aa12.91□□□□□ -0.34
CDH1-208ENST00000565810 TDRD9Q8NDG6 1382 aaKnown RBP12.9□□□□□ -0.34
CDH1-208ENST00000565810 KIF27Q86VH2 1401 aa12.89□□□□□ -0.35
CDH1-208ENST00000565810 FAM9AQ8IZU1 332 aaPredicted RBP12.86□□□□□ -0.35
CDH1-208ENST00000565810 TARBP1Q13395 1621 aaKnown RBP12.86□□□□□ -0.35
CDH1-208ENST00000565810 AQRO60306 1485 aaKnown RBP eCLIP12.85□□□□□ -0.35
CDH1-208ENST00000565810 ZNF608Q9ULD9 1512 aaPredicted RBP12.85□□□□□ -0.35
CDH1-208ENST00000565810 GAPVD1Q14C86 1478 aa12.85□□□□□ -0.35
CDH1-208ENST00000565810 EEA1Q15075 1411 aa12.84□□□□□ -0.35
CDH1-208ENST00000565810 CSRNP3Q8WYN3 585 aa12.83□□□□□ -0.36
CDH1-208ENST00000565810 IGF1RP08069 1367 aa12.81□□□□□ -0.36
CDH1-208ENST00000565810 WDR97A6NE52 1622 aa12.8□□□□□ -0.36
CDH1-208ENST00000565810 GRIN2BQ13224 1484 aa12.8□□□□□ -0.36
CDH1-208ENST00000565810 RUSC2Q8N2Y8 1516 aa12.79□□□□□ -0.36
CDH1-208ENST00000565810 EIF4G3O43432 1585 aaKnown RBP12.75□□□□□ -0.37
CDH1-208ENST00000565810 ERICH3Q5RHP9 1530 aa12.75□□□□□ -0.37
CDH1-208ENST00000565810 CARMIL1Q5VZK9 1371 aa12.75□□□□□ -0.37
CDH1-208ENST00000565810 CHMP7Q8WUX9 453 aaPredicted RBP12.75□□□□□ -0.37
CDH1-208ENST00000565810 ABCA5Q8WWZ7 1642 aa12.75□□□□□ -0.37
CDH1-208ENST00000565810 FBLN2P98095 1184 aa12.74□□□□□ -0.37
CDH1-208ENST00000565810 SNAPC4Q5SXM2 1469 aa12.72□□□□□ -0.37
CDH1-208ENST00000565810 MAGI1Q96QZ7 1491 aaPredicted RBP12.72□□□□□ -0.37
CDH1-208ENST00000565810 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.37
CDH1-208ENST00000565810 SYNJ2O15056 1496 aa12.67□□□□□ -0.38
CDH1-208ENST00000565810 PRXQ9BXM0 1461 aa12.67□□□□□ -0.38
CDH1-208ENST00000565810 RAPGEF2Q9Y4G8 1499 aa12.67□□□□□ -0.38
CDH1-208ENST00000565810 EHMT2Q96KQ7 1210 aa12.67□□□□□ -0.38
CDH1-208ENST00000565810 PBRM1Q86U86 1689 aa12.65□□□□□ -0.38
CDH1-208ENST00000565810 UBTFP17480 764 aaKnown RBP12.65□□□□□ -0.38
CDH1-208ENST00000565810 CUL7Q14999 1698 aa12.64□□□□□ -0.39
CDH1-208ENST00000565810 ADAMTS12P58397 1594 aa12.63□□□□□ -0.39
CDH1-208ENST00000565810 GOLGA3Q08378 1498 aa12.61□□□□□ -0.39
CDH1-208ENST00000565810 GRIN2AQ12879 1464 aa12.61□□□□□ -0.39
CDH1-208ENST00000565810 OSCARQ8IYS5 282 aa12.61□□□□□ -0.39
CDH1-208ENST00000565810 LOC105371045A0A1W2PR82 267 aa12.6□□□□□ -0.39
CDH1-208ENST00000565810 KIF21BO75037 1637 aa12.59□□□□□ -0.39
CDH1-208ENST00000565810 NUP160Q12769 1436 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms