RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, humanhuman

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-222ENST00000564228 NISCHQ9Y2I1 1504 aa24.06■■□□□ 1.44
TCF4-222ENST00000564228 CCDC180Q9P1Z9 1646 aa21.11■□□□□ 0.97
TCF4-222ENST00000564228 CHIC1Q5VXU3 224 aa20.18■□□□□ 0.82
TCF4-222ENST00000564228 ZCCHC6Q5VYS8 1495 aaKnown RBP20.16■□□□□ 0.82
TCF4-222ENST00000564228 ABCC9O60706 1549 aa20.16■□□□□ 0.82
TCF4-222ENST00000564228 DCAF8L2P0C7V8 631 aa20■□□□□ 0.79
TCF4-222ENST00000564228 DCAF1Q9Y4B6 1507 aa19.86■□□□□ 0.77
TCF4-222ENST00000564228 MYO15BQ96JP2 1530 aa19.68■□□□□ 0.74
TCF4-222ENST00000564228 NACADO15069 1562 aa19.68■□□□□ 0.74
TCF4-222ENST00000564228 RB1CC1Q8TDY2 1594 aa19.59■□□□□ 0.73
TCF4-222ENST00000564228 SHROOM4Q9ULL8 1493 aa19.55■□□□□ 0.72
TCF4-222ENST00000564228 AEBP2Q6ZN18 517 aaPredicted RBP19.51■□□□□ 0.71
TCF4-222ENST00000564228 SCRIBQ14160 1630 aa19.42■□□□□ 0.7
TCF4-222ENST00000564228 UNC13AQ9UPW8 1703 aa19.27■□□□□ 0.68
TCF4-222ENST00000564228 BICRAQ9NZM4 1560 aa18.99■□□□□ 0.63
TCF4-222ENST00000564228 PABPN1Q86U42 306 aaKnown RBP eCLIP18.96■□□□□ 0.63
TCF4-222ENST00000564228 CECR2Q9BXF3 1484 aa18.72■□□□□ 0.59
TCF4-222ENST00000564228 SUPT5HO00267 1087 aaKnown RBP18.7■□□□□ 0.58
TCF4-222ENST00000564228 BAZ1AQ9NRL2 1556 aaPredicted RBP18.61■□□□□ 0.57
TCF4-222ENST00000564228 MROH2BQ7Z745 1585 aa18.6■□□□□ 0.57
TCF4-222ENST00000564228 RSF1Q96T23 1441 aaPredicted RBP18.58■□□□□ 0.56
TCF4-222ENST00000564228 SMARCA4P51532 1647 aa18.57■□□□□ 0.56
TCF4-222ENST00000564228 HRCP23327 699 aa18.53■□□□□ 0.56
TCF4-222ENST00000564228 WIZO95785 1651 aa18.48■□□□□ 0.55
TCF4-222ENST00000564228 EIF4G1Q04637 1599 aaKnown RBP18.44■□□□□ 0.54
TCF4-222ENST00000564228 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
TCF4-222ENST00000564228 SMARCA2P51531 1590 aa18.28■□□□□ 0.52
TCF4-222ENST00000564228 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
TCF4-222ENST00000564228 PELP1Q8IZL8 1130 aaKnown RBP18.27■□□□□ 0.51
TCF4-222ENST00000564228 CC2D2AQ9P2K1 1620 aa18.24■□□□□ 0.51
TCF4-222ENST00000564228 TOP2AP11388 1531 aaKnown RBP18.24■□□□□ 0.51
TCF4-222ENST00000564228 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
TCF4-222ENST00000564228 NCAPD3P42695 1498 aa18.13■□□□□ 0.49
TCF4-222ENST00000564228 HMGXB3Q12766 1538 aa18.12■□□□□ 0.49
TCF4-222ENST00000564228 CCDC88BA6NC98 1476 aa18.03■□□□□ 0.48
TCF4-222ENST00000564228 PHF23Q9BUL5 403 aaPredicted RBP17.99■□□□□ 0.47
TCF4-222ENST00000564228 DNAJC5BQ9UF47 199 aa17.92■□□□□ 0.46
TCF4-222ENST00000564228 PCGF6Q9BYE7 350 aa17.87■□□□□ 0.45
TCF4-222ENST00000564228 PPARGC1BQ86YN6 1023 aaKnown RBP17.84■□□□□ 0.45
TCF4-222ENST00000564228 PRDM2Q13029 1718 aa17.69■□□□□ 0.42
TCF4-222ENST00000564228 MYT1Q01538 1121 aa17.69■□□□□ 0.42
TCF4-222ENST00000564228 CFTRP13569 1480 aa17.69■□□□□ 0.42
TCF4-222ENST00000564228 CADPSQ9ULU8 1353 aa17.67■□□□□ 0.42
TCF4-222ENST00000564228 ABCC8Q09428 1581 aa17.65■□□□□ 0.42
TCF4-222ENST00000564228 NESP48681 1621 aa17.63■□□□□ 0.41
TCF4-222ENST00000564228 LAMC3Q9Y6N6 1575 aa17.6■□□□□ 0.41
TCF4-222ENST00000564228 TRIM41Q8WV44 630 aa17.57■□□□□ 0.4
TCF4-222ENST00000564228 ZEB1P37275 1124 aaPredicted RBP17.53■□□□□ 0.4
TCF4-222ENST00000564228 WRNQ14191 1432 aaPredicted RBP eCLIP17.51■□□□□ 0.39
TCF4-222ENST00000564228 FANCD2Q9BXW9 1451 aa17.5■□□□□ 0.39
TCF4-222ENST00000564228 TRIM26Q12899 539 aaPredicted RBP17.49■□□□□ 0.39
TCF4-222ENST00000564228 SCAF1Q9H7N4 1312 aaKnown RBP17.48■□□□□ 0.39
TCF4-222ENST00000564228 SYNJ1O43426 1573 aa17.47■□□□□ 0.39
TCF4-222ENST00000564228 KIF21AQ7Z4S6 1674 aa17.46■□□□□ 0.39
TCF4-222ENST00000564228 PDS5BQ9NTI5 1447 aa17.45■□□□□ 0.38
TCF4-222ENST00000564228 CEP164Q9UPV0 1460 aa17.42■□□□□ 0.38
TCF4-222ENST00000564228 TOP2BQ02880 1626 aa17.41■□□□□ 0.38
TCF4-222ENST00000564228 CUX1P39880 1505 aa17.4■□□□□ 0.38
TCF4-222ENST00000564228 BIVM-ERCC5R4GMW8 1640 aa17.4■□□□□ 0.38
TCF4-222ENST00000564228 ERCC6Q03468 1493 aa17.31■□□□□ 0.36
TCF4-222ENST00000564228 DNMBPQ6XZF7 1577 aa17.31■□□□□ 0.36
TCF4-222ENST00000564228 URB2Q14146 1524 aaKnown RBP17.29■□□□□ 0.36
TCF4-222ENST00000564228 TOPBP1Q92547 1522 aa17.29■□□□□ 0.36
TCF4-222ENST00000564228 FAM9AQ8IZU1 332 aaPredicted RBP17.29■□□□□ 0.36
TCF4-222ENST00000564228 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
TCF4-222ENST00000564228 MRC2Q9UBG0 1479 aa17.24■□□□□ 0.35
TCF4-222ENST00000564228 SOGA1O94964 1423 aa17.23■□□□□ 0.35
TCF4-222ENST00000564228 RUSC2Q8N2Y8 1516 aa17.19■□□□□ 0.34
TCF4-222ENST00000564228 POLA1P09884 1462 aaPredicted RBP17.19■□□□□ 0.34
TCF4-222ENST00000564228 THOC2Q8NI27 1593 aaKnown RBP17.18■□□□□ 0.34
TCF4-222ENST00000564228 WDR62O43379 1518 aa17.16■□□□□ 0.34
TCF4-222ENST00000564228 LOC105371045A0A1W2PR82 267 aa17.15■□□□□ 0.34
TCF4-222ENST00000564228 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
TCF4-222ENST00000564228 EEA1Q15075 1411 aa17.12■□□□□ 0.33
TCF4-222ENST00000564228 ACIN1Q9UKV3 1341 aaKnown RBP17.11■□□□□ 0.33
TCF4-222ENST00000564228 CUX2O14529 1486 aa17.1■□□□□ 0.33
TCF4-222ENST00000564228 EHMT2Q96KQ7 1210 aa17.09■□□□□ 0.33
TCF4-222ENST00000564228 WDR97A6NE52 1622 aa17.08■□□□□ 0.33
TCF4-222ENST00000564228 KIF27Q86VH2 1401 aa17.08■□□□□ 0.32
TCF4-222ENST00000564228 ABCA10Q8WWZ4 1543 aa17.07■□□□□ 0.32
TCF4-222ENST00000564228 CSRNP3Q8WYN3 585 aa17.06■□□□□ 0.32
TCF4-222ENST00000564228 TARBP1Q13395 1621 aaKnown RBP17.06■□□□□ 0.32
TCF4-222ENST00000564228 TDRD9Q8NDG6 1382 aaKnown RBP16.99■□□□□ 0.31
TCF4-222ENST00000564228 IFT140Q96RY7 1462 aa16.99■□□□□ 0.31
TCF4-222ENST00000564228 ABCA5Q8WWZ7 1642 aa16.98■□□□□ 0.31
TCF4-222ENST00000564228 KIF21BO75037 1637 aa16.95■□□□□ 0.3
TCF4-222ENST00000564228 GAPVD1Q14C86 1478 aa16.94■□□□□ 0.3
TCF4-222ENST00000564228 NEUROD1Q13562 356 aa16.94■□□□□ 0.3
TCF4-222ENST00000564228 PLPPR3Q6T4P5 718 aa16.94■□□□□ 0.3
TCF4-222ENST00000564228 ZNF608Q9ULD9 1512 aaPredicted RBP16.93■□□□□ 0.3
TCF4-222ENST00000564228 PBRM1Q86U86 1689 aa16.93■□□□□ 0.3
TCF4-222ENST00000564228 CENPBP07199 599 aaPredicted RBP16.93■□□□□ 0.3
TCF4-222ENST00000564228 IGF1RP08069 1367 aa16.93■□□□□ 0.3
TCF4-222ENST00000564228 AQRO60306 1485 aaKnown RBP eCLIP16.92■□□□□ 0.3
TCF4-222ENST00000564228 GOLGA3Q08378 1498 aa16.91■□□□□ 0.3
TCF4-222ENST00000564228 EIF4G3O43432 1585 aaKnown RBP16.9■□□□□ 0.3
TCF4-222ENST00000564228 PRXQ9BXM0 1461 aa16.9■□□□□ 0.3
TCF4-222ENST00000564228 RAPGEF2Q9Y4G8 1499 aa16.9■□□□□ 0.3
TCF4-222ENST00000564228 UBTFP17480 764 aaKnown RBP16.88■□□□□ 0.29
TCF4-222ENST00000564228 CUL7Q14999 1698 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms