RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
VPS39-204ENST00000561818 AEBP2Q6ZN18 517 aaPredicted RBP15.99■□□□□ 0.15
VPS39-204ENST00000561818 CHIC1Q5VXU3 224 aa15.23■□□□□ 0.03
VPS39-204ENST00000561818 CCDC180Q9P1Z9 1646 aa14.62□□□□□ -0.07
VPS39-204ENST00000561818 ZCCHC6Q5VYS8 1495 aaKnown RBP14.04□□□□□ -0.16
VPS39-204ENST00000561818 DCAF1Q9Y4B6 1507 aa13.96□□□□□ -0.17
VPS39-204ENST00000561818 MYO15BQ96JP2 1530 aa13.82□□□□□ -0.2
VPS39-204ENST00000561818 NACADO15069 1562 aa13.58□□□□□ -0.23
VPS39-204ENST00000561818 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
VPS39-204ENST00000561818 DCAF8L2P0C7V8 631 aa13.47□□□□□ -0.25
VPS39-204ENST00000561818 PHF23Q9BUL5 403 aaPredicted RBP13.42□□□□□ -0.26
VPS39-204ENST00000561818 RB1CC1Q8TDY2 1594 aa13.41□□□□□ -0.26
VPS39-204ENST00000561818 ABCC9O60706 1549 aa13.4□□□□□ -0.26
VPS39-204ENST00000561818 SHROOM4Q9ULL8 1493 aa13.35□□□□□ -0.27
VPS39-204ENST00000561818 SCRIBQ14160 1630 aa13.2□□□□□ -0.3
VPS39-204ENST00000561818 SUPT5HO00267 1087 aaKnown RBP12.97□□□□□ -0.33
VPS39-204ENST00000561818 BAZ1AQ9NRL2 1556 aaPredicted RBP12.94□□□□□ -0.34
VPS39-204ENST00000561818 UNC13AQ9UPW8 1703 aa12.9□□□□□ -0.34
VPS39-204ENST00000561818 RSF1Q96T23 1441 aaPredicted RBP12.89□□□□□ -0.35
VPS39-204ENST00000561818 BICRAQ9NZM4 1560 aa12.79□□□□□ -0.36
VPS39-204ENST00000561818 SMARCA4P51532 1647 aa12.77□□□□□ -0.37
VPS39-204ENST00000561818 MROH2BQ7Z745 1585 aa12.74□□□□□ -0.37
VPS39-204ENST00000561818 CECR2Q9BXF3 1484 aa12.73□□□□□ -0.37
VPS39-204ENST00000561818 PEG3Q9GZU2 1588 aa12.72□□□□□ -0.37
VPS39-204ENST00000561818 TOP2AP11388 1531 aaKnown RBP12.68□□□□□ -0.38
VPS39-204ENST00000561818 SMARCA2P51531 1590 aa12.66□□□□□ -0.38
VPS39-204ENST00000561818 FOXD1Q16676 465 aa12.66□□□□□ -0.38
VPS39-204ENST00000561818 WIZO95785 1651 aa12.61□□□□□ -0.39
VPS39-204ENST00000561818 PABPN1Q86U42 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
VPS39-204ENST00000561818 HMGXB3Q12766 1538 aa12.52□□□□□ -0.4
VPS39-204ENST00000561818 ATAD2BQ9ULI0 1458 aa12.52□□□□□ -0.41
VPS39-204ENST00000561818 BAZ1BQ9UIG0 1483 aaKnown RBP12.5□□□□□ -0.41
VPS39-204ENST00000561818 EIF4G1Q04637 1599 aaKnown RBP12.48□□□□□ -0.41
VPS39-204ENST00000561818 NCAPD3P42695 1498 aa12.46□□□□□ -0.41
VPS39-204ENST00000561818 CCDC88BA6NC98 1476 aa12.42□□□□□ -0.42
VPS39-204ENST00000561818 TRIM41Q8WV44 630 aa12.35□□□□□ -0.43
VPS39-204ENST00000561818 EEA1Q15075 1411 aa12.3□□□□□ -0.44
VPS39-204ENST00000561818 CC2D2AQ9P2K1 1620 aa12.22□□□□□ -0.45
VPS39-204ENST00000561818 WRNQ14191 1432 aaPredicted RBP eCLIP12.21□□□□□ -0.45
VPS39-204ENST00000561818 CFTRP13569 1480 aa12.2□□□□□ -0.46
VPS39-204ENST00000561818 PRDM2Q13029 1718 aa12.19□□□□□ -0.46
VPS39-204ENST00000561818 PLPPR3Q6T4P5 718 aa12.17□□□□□ -0.46
VPS39-204ENST00000561818 CADPSQ9ULU8 1353 aa12.12□□□□□ -0.47
VPS39-204ENST00000561818 TOP2BQ02880 1626 aa12.11□□□□□ -0.47
VPS39-204ENST00000561818 ABCC8Q09428 1581 aa12.1□□□□□ -0.47
VPS39-204ENST00000561818 BIVM-ERCC5R4GMW8 1640 aa12.1□□□□□ -0.47
VPS39-204ENST00000561818 LAMC3Q9Y6N6 1575 aa12.08□□□□□ -0.48
VPS39-204ENST00000561818 SYNJ1O43426 1573 aa12.03□□□□□ -0.48
VPS39-204ENST00000561818 CEP164Q9UPV0 1460 aa12.01□□□□□ -0.49
VPS39-204ENST00000561818 PDS5BQ9NTI5 1447 aa11.99□□□□□ -0.49
VPS39-204ENST00000561818 GOLGA3Q08378 1498 aa11.99□□□□□ -0.49
VPS39-204ENST00000561818 KIF21BO75037 1637 aa11.99□□□□□ -0.49
VPS39-204ENST00000561818 CSRNP3Q8WYN3 585 aa11.98□□□□□ -0.49
VPS39-204ENST00000561818 FANCD2Q9BXW9 1451 aa11.96□□□□□ -0.49
VPS39-204ENST00000561818 KIF27Q86VH2 1401 aa11.96□□□□□ -0.49
VPS39-204ENST00000561818 PPP6R1Q9UPN7 881 aa11.96□□□□□ -0.49
VPS39-204ENST00000561818 TNIKQ9UKE5 1360 aa11.95□□□□□ -0.5
VPS39-204ENST00000561818 CUX1P39880 1505 aa11.94□□□□□ -0.5
VPS39-204ENST00000561818 ERICH3Q5RHP9 1530 aa11.94□□□□□ -0.5
VPS39-204ENST00000561818 DNMBPQ6XZF7 1577 aa11.93□□□□□ -0.5
VPS39-204ENST00000561818 SOGA1O94964 1423 aa11.91□□□□□ -0.5
VPS39-204ENST00000561818 LOC105371045A0A1W2PR82 267 aa11.89□□□□□ -0.51
VPS39-204ENST00000561818 ADRA2BP18089 450 aa11.89□□□□□ -0.51
VPS39-204ENST00000561818 FAM9AQ8IZU1 332 aaPredicted RBP11.89□□□□□ -0.51
VPS39-204ENST00000561818 PRXQ9BXM0 1461 aa11.83□□□□□ -0.52
VPS39-204ENST00000561818 FGD5Q6ZNL6 1462 aa11.83□□□□□ -0.52
VPS39-204ENST00000561818 WDR97A6NE52 1622 aa11.82□□□□□ -0.52
VPS39-204ENST00000561818 ABCA10Q8WWZ4 1543 aa11.82□□□□□ -0.52
VPS39-204ENST00000561818 TOPBP1Q92547 1522 aa11.82□□□□□ -0.52
VPS39-204ENST00000561818 CEP162Q5TB80 1403 aa11.82□□□□□ -0.52
VPS39-204ENST00000561818 UBTFP17480 764 aaKnown RBP11.8□□□□□ -0.52
VPS39-204ENST00000561818 PIAS4Q8N2W9 510 aaPredicted RBP11.8□□□□□ -0.52
VPS39-204ENST00000561818 CUX2O14529 1486 aa11.78□□□□□ -0.52
VPS39-204ENST00000561818 CUL7Q14999 1698 aa11.78□□□□□ -0.52
VPS39-204ENST00000561818 POLA1P09884 1462 aaPredicted RBP11.76□□□□□ -0.53
VPS39-204ENST00000561818 RUSC2Q8N2Y8 1516 aa11.76□□□□□ -0.53
VPS39-204ENST00000561818 TRIM26Q12899 539 aaPredicted RBP11.76□□□□□ -0.53
VPS39-204ENST00000561818 MRC2Q9UBG0 1479 aa11.76□□□□□ -0.53
VPS39-204ENST00000561818 NESP48681 1621 aa11.75□□□□□ -0.53
VPS39-204ENST00000561818 MSH5O43196 834 aa11.74□□□□□ -0.53
VPS39-204ENST00000561818 RAPGEF2Q9Y4G8 1499 aa11.74□□□□□ -0.53
VPS39-204ENST00000561818 CLIP1P30622 1438 aa11.73□□□□□ -0.53
VPS39-204ENST00000561818 URB2Q14146 1524 aaKnown RBP11.72□□□□□ -0.53
VPS39-204ENST00000561818 IGF1RP08069 1367 aa11.7□□□□□ -0.54
VPS39-204ENST00000561818 CARMIL1Q5VZK9 1371 aa11.69□□□□□ -0.54
VPS39-204ENST00000561818 KIF21AQ7Z4S6 1674 aa11.69□□□□□ -0.54
VPS39-204ENST00000561818 WDR62O43379 1518 aa11.69□□□□□ -0.54
VPS39-204ENST00000561818 VPS8Q8N3P4 1428 aa11.69□□□□□ -0.54
VPS39-204ENST00000561818 IFT140Q96RY7 1462 aa11.68□□□□□ -0.54
VPS39-204ENST00000561818 ABCA5Q8WWZ7 1642 aa11.68□□□□□ -0.54
VPS39-204ENST00000561818 ERCC6Q03468 1493 aa11.65□□□□□ -0.54
VPS39-204ENST00000561818 APLP2Q06481 763 aa11.65□□□□□ -0.54
VPS39-204ENST00000561818 EFCAB5A4FU69 1503 aa11.65□□□□□ -0.55
VPS39-204ENST00000561818 GAPVD1Q14C86 1478 aa11.64□□□□□ -0.55
VPS39-204ENST00000561818 FHAD1B1AJZ9 1412 aa11.62□□□□□ -0.55
VPS39-204ENST00000561818 TARBP1Q13395 1621 aaKnown RBP11.62□□□□□ -0.55
VPS39-204ENST00000561818 RAD54L2Q9Y4B4 1467 aa11.6□□□□□ -0.55
VPS39-204ENST00000561818 GRIN2BQ13224 1484 aa11.59□□□□□ -0.55
VPS39-204ENST00000561818 PCGF6Q9BYE7 350 aa11.59□□□□□ -0.55
VPS39-204ENST00000561818 MAP3K1Q13233 1512 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms