RNA–Protein interactions for RNA: ENST00000561366.1

IDH3A-223, Transcript of isocitrate dehydrogenase 3 (NAD(+)) alpha, human

TSL 3 BASIC

Gene IDH3A, Length 389 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IDH3A-223	ENST00000561366	NISCH	Q9Y2I1	1504 aa		16.65	■□□□□ 0.26
IDH3A-223	ENST00000561366	CCDC180	Q9P1Z9	1646 aa		14.59	□□□□□ -0.07
IDH3A-223	ENST00000561366	ABCC9	O60706	1549 aa		14.41	□□□□□ -0.1
IDH3A-223	ENST00000561366	DCAF8L2	P0C7V8	631 aa		14.16	□□□□□ -0.14
IDH3A-223	ENST00000561366	ZCCHC6	Q5VYS8	1495 aa	Known RBP	13.87	□□□□□ -0.19
IDH3A-223	ENST00000561366	NACAD	O15069	1562 aa		13.77	□□□□□ -0.21
IDH3A-223	ENST00000561366	RB1CC1	Q8TDY2	1594 aa		13.77	□□□□□ -0.21
IDH3A-223	ENST00000561366	DCAF1	Q9Y4B6	1507 aa		13.67	□□□□□ -0.22
IDH3A-223	ENST00000561366	MYO15B	Q96JP2	1530 aa		13.65	□□□□□ -0.22
IDH3A-223	ENST00000561366	PABPN1	Q86U42	306 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
IDH3A-223	ENST00000561366	SCRIB	Q14160	1630 aa		13.52	□□□□□ -0.25
IDH3A-223	ENST00000561366	SHROOM4	Q9ULL8	1493 aa		13.48	□□□□□ -0.25
IDH3A-223	ENST00000561366	UNC13A	Q9UPW8	1703 aa		13.39	□□□□□ -0.27
IDH3A-223	ENST00000561366	BICRA	Q9NZM4	1560 aa		13.37	□□□□□ -0.27
IDH3A-223	ENST00000561366	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.32	□□□□□ -0.28
IDH3A-223	ENST00000561366	DNAJC5B	Q9UF47	199 aa		13.17	□□□□□ -0.3
IDH3A-223	ENST00000561366	CECR2	Q9BXF3	1484 aa		13.05	□□□□□ -0.32
IDH3A-223	ENST00000561366	EIF4G1	Q04637	1599 aa	Known RBP	13.01	□□□□□ -0.33
IDH3A-223	ENST00000561366	CC2D2A	Q9P2K1	1620 aa		12.94	□□□□□ -0.34
IDH3A-223	ENST00000561366	MROH2B	Q7Z745	1585 aa		12.89	□□□□□ -0.35
IDH3A-223	ENST00000561366	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	12.86	□□□□□ -0.35
IDH3A-223	ENST00000561366	SMARCA4	P51532	1647 aa		12.86	□□□□□ -0.35
IDH3A-223	ENST00000561366	ATAD2B	Q9ULI0	1458 aa		12.81	□□□□□ -0.36
IDH3A-223	ENST00000561366	RSF1	Q96T23	1441 aa	Predicted RBP	12.8	□□□□□ -0.36
IDH3A-223	ENST00000561366	SUPT5H	O00267	1087 aa	Known RBP	12.78	□□□□□ -0.36
IDH3A-223	ENST00000561366	NCAPD3	P42695	1498 aa		12.75	□□□□□ -0.37
IDH3A-223	ENST00000561366	WIZ	O95785	1651 aa		12.73	□□□□□ -0.37
IDH3A-223	ENST00000561366	SMARCA2	P51531	1590 aa		12.73	□□□□□ -0.37
IDH3A-223	ENST00000561366	BAZ1B	Q9UIG0	1483 aa	Known RBP	12.72	□□□□□ -0.37
IDH3A-223	ENST00000561366	CHIC1	Q5VXU3	224 aa		12.72	□□□□□ -0.37
IDH3A-223	ENST00000561366	PEG3	Q9GZU2	1588 aa		12.66	□□□□□ -0.38
IDH3A-223	ENST00000561366	HMGXB3	Q12766	1538 aa		12.63	□□□□□ -0.39
IDH3A-223	ENST00000561366	TOP2A	P11388	1531 aa	Known RBP	12.57	□□□□□ -0.4
IDH3A-223	ENST00000561366	NES	P48681	1621 aa		12.51	□□□□□ -0.41
IDH3A-223	ENST00000561366	CCDC88B	A6NC98	1476 aa		12.5	□□□□□ -0.41
IDH3A-223	ENST00000561366	CADPS	Q9ULU8	1353 aa		12.44	□□□□□ -0.42
IDH3A-223	ENST00000561366	ERCC6	Q03468	1493 aa		12.39	□□□□□ -0.43
IDH3A-223	ENST00000561366	CFTR	P13569	1480 aa		12.34	□□□□□ -0.43
IDH3A-223	ENST00000561366	PDS5B	Q9NTI5	1447 aa		12.34	□□□□□ -0.43
IDH3A-223	ENST00000561366	LAMC3	Q9Y6N6	1575 aa		12.34	□□□□□ -0.43
IDH3A-223	ENST00000561366	FANCD2	Q9BXW9	1451 aa		12.29	□□□□□ -0.44
IDH3A-223	ENST00000561366	CEP164	Q9UPV0	1460 aa		12.25	□□□□□ -0.45
IDH3A-223	ENST00000561366	KIF21A	Q7Z4S6	1674 aa		12.23	□□□□□ -0.45
IDH3A-223	ENST00000561366	MRC2	Q9UBG0	1479 aa		12.2	□□□□□ -0.46
IDH3A-223	ENST00000561366	URB2	Q14146	1524 aa	Known RBP	12.16	□□□□□ -0.46
IDH3A-223	ENST00000561366	THOC2	Q8NI27	1593 aa	Known RBP	12.14	□□□□□ -0.47
IDH3A-223	ENST00000561366	ABCC8	Q09428	1581 aa		12.1	□□□□□ -0.47
IDH3A-223	ENST00000561366	WDR62	O43379	1518 aa		12.1	□□□□□ -0.47
IDH3A-223	ENST00000561366	TOPBP1	Q92547	1522 aa		12.1	□□□□□ -0.47
IDH3A-223	ENST00000561366	CUX2	O14529	1486 aa		12.09	□□□□□ -0.47
IDH3A-223	ENST00000561366	PRDM2	Q13029	1718 aa		12.09	□□□□□ -0.47
IDH3A-223	ENST00000561366	CUX1	P39880	1505 aa		12.06	□□□□□ -0.48
IDH3A-223	ENST00000561366	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.06	□□□□□ -0.48
IDH3A-223	ENST00000561366	DNMBP	Q6XZF7	1577 aa		12.05	□□□□□ -0.48
IDH3A-223	ENST00000561366	RAD54L2	Q9Y4B4	1467 aa		12.03	□□□□□ -0.48
IDH3A-223	ENST00000561366	SOGA1	O94964	1423 aa		12.02	□□□□□ -0.49
IDH3A-223	ENST00000561366	FGD5	Q6ZNL6	1462 aa		12.02	□□□□□ -0.49
IDH3A-223	ENST00000561366	POLA1	P09884	1462 aa	Predicted RBP	12.01	□□□□□ -0.49
IDH3A-223	ENST00000561366	TRIM41	Q8WV44	630 aa		12	□□□□□ -0.49
IDH3A-223	ENST00000561366	SYNJ1	O43426	1573 aa		12	□□□□□ -0.49
IDH3A-223	ENST00000561366	IFT140	Q96RY7	1462 aa		11.98	□□□□□ -0.49
IDH3A-223	ENST00000561366	TDRD9	Q8NDG6	1382 aa	Known RBP	11.98	□□□□□ -0.49
IDH3A-223	ENST00000561366	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.97	□□□□□ -0.49
IDH3A-223	ENST00000561366	AQR	O60306	1485 aa	Known RBP eCLIP	11.95	□□□□□ -0.5	2e-6	■■■■■ 26.9
IDH3A-223	ENST00000561366	TOP2B	Q02880	1626 aa		11.93	□□□□□ -0.5
IDH3A-223	ENST00000561366	FBLN2	P98095	1184 aa		11.9	□□□□□ -0.5
IDH3A-223	ENST00000561366	TARBP1	Q13395	1621 aa	Known RBP	11.89	□□□□□ -0.51
IDH3A-223	ENST00000561366	BIVM-ERCC5	R4GMW8	1640 aa		11.89	□□□□□ -0.51
IDH3A-223	ENST00000561366	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.86	□□□□□ -0.51
IDH3A-223	ENST00000561366	ABCA10	Q8WWZ4	1543 aa		11.86	□□□□□ -0.51
IDH3A-223	ENST00000561366	GAPVD1	Q14C86	1478 aa		11.84	□□□□□ -0.51
IDH3A-223	ENST00000561366	EIF4G3	O43432	1585 aa	Known RBP	11.84	□□□□□ -0.51
IDH3A-223	ENST00000561366	RUSC2	Q8N2Y8	1516 aa		11.81	□□□□□ -0.52
IDH3A-223	ENST00000561366	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.81	□□□□□ -0.52
IDH3A-223	ENST00000561366	KIF27	Q86VH2	1401 aa		11.8	□□□□□ -0.52
IDH3A-223	ENST00000561366	GRIN2B	Q13224	1484 aa		11.8	□□□□□ -0.52
IDH3A-223	ENST00000561366	SNAPC4	Q5SXM2	1469 aa		11.8	□□□□□ -0.52
IDH3A-223	ENST00000561366	EHMT2	Q96KQ7	1210 aa		11.78	□□□□□ -0.52
IDH3A-223	ENST00000561366	WDR97	A6NE52	1622 aa		11.78	□□□□□ -0.52
IDH3A-223	ENST00000561366	IGF1R	P08069	1367 aa		11.77	□□□□□ -0.53
IDH3A-223	ENST00000561366	OSCAR	Q8IYS5	282 aa		11.76	□□□□□ -0.53
IDH3A-223	ENST00000561366	ABCA5	Q8WWZ7	1642 aa		11.75	□□□□□ -0.53
IDH3A-223	ENST00000561366	MAGI1	Q96QZ7	1491 aa	Predicted RBP	11.71	□□□□□ -0.53
IDH3A-223	ENST00000561366	CSRNP3	Q8WYN3	585 aa		11.71	□□□□□ -0.53
IDH3A-223	ENST00000561366	PBRM1	Q86U86	1689 aa		11.71	□□□□□ -0.54
IDH3A-223	ENST00000561366	CARMIL1	Q5VZK9	1371 aa		11.7	□□□□□ -0.54
IDH3A-223	ENST00000561366	SYNJ2	O15056	1496 aa		11.7	□□□□□ -0.54
IDH3A-223	ENST00000561366	FHAD1	B1AJZ9	1412 aa		11.69	□□□□□ -0.54
IDH3A-223	ENST00000561366	DNAJC5	Q9H3Z4	198 aa		11.68	□□□□□ -0.54
IDH3A-223	ENST00000561366	ERICH3	Q5RHP9	1530 aa		11.68	□□□□□ -0.54
IDH3A-223	ENST00000561366	ADAMTS12	P58397	1594 aa		11.66	□□□□□ -0.54
IDH3A-223	ENST00000561366	GRIN2A	Q12879	1464 aa		11.64	□□□□□ -0.55
IDH3A-223	ENST00000561366	CHD1	O14646	1710 aa		11.64	□□□□□ -0.55
IDH3A-223	ENST00000561366	RANGAP1	P46060	587 aa	Predicted RBP	11.63	□□□□□ -0.55
IDH3A-223	ENST00000561366	RAPGEF2	Q9Y4G8	1499 aa		11.6	□□□□□ -0.55
IDH3A-223	ENST00000561366	EEA1	Q15075	1411 aa		11.6	□□□□□ -0.55
IDH3A-223	ENST00000561366	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.6	□□□□□ -0.55
IDH3A-223	ENST00000561366	UBTF	P17480	764 aa	Known RBP	11.58	□□□□□ -0.56
IDH3A-223	ENST00000561366	CEP170	Q5SW79	1584 aa		11.58	□□□□□ -0.56
IDH3A-223	ENST00000561366	PRX	Q9BXM0	1461 aa		11.57	□□□□□ -0.56

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