RNA–Protein interactions for RNA: ENST00000560448.5

PKNOX1-209, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 5

Gene PKNOX1, Length 1,429 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-209ENST00000560448 NISCHQ9Y2I1 1504 aa33.67■■■□□ 2.98
PKNOX1-209ENST00000560448 CCDC180Q9P1Z9 1646 aa29.96■■■□□ 2.39
PKNOX1-209ENST00000560448 ABCC9O60706 1549 aa28.96■■■□□ 2.23
PKNOX1-209ENST00000560448 NACADO15069 1562 aa28.13■■■□□ 2.09
PKNOX1-209ENST00000560448 ZCCHC6Q5VYS8 1495 aaKnown RBP28.1■■■□□ 2.09
PKNOX1-209ENST00000560448 MYO15BQ96JP2 1530 aa28.09■■■□□ 2.09
PKNOX1-209ENST00000560448 RB1CC1Q8TDY2 1594 aa28.09■■■□□ 2.09
PKNOX1-209ENST00000560448 DCAF1Q9Y4B6 1507 aa27.99■■■□□ 2.07
PKNOX1-209ENST00000560448 DCAF8L2P0C7V8 631 aa27.91■■■□□ 2.06
PKNOX1-209ENST00000560448 UNC13AQ9UPW8 1703 aa27.35■■□□□ 1.97
PKNOX1-209ENST00000560448 SCRIBQ14160 1630 aa27.18■■□□□ 1.94
PKNOX1-209ENST00000560448 BICRAQ9NZM4 1560 aa27.13■■□□□ 1.93
PKNOX1-209ENST00000560448 SHROOM4Q9ULL8 1493 aa27.11■■□□□ 1.93
PKNOX1-209ENST00000560448 PABPN1Q86U42 306 aaKnown RBP eCLIP27.04■■□□□ 1.92
PKNOX1-209ENST00000560448 EIF4G1Q04637 1599 aaKnown RBP26.45■■□□□ 1.83
PKNOX1-209ENST00000560448 DNAJC5BQ9UF47 199 aa26.42■■□□□ 1.82
PKNOX1-209ENST00000560448 CC2D2AQ9P2K1 1620 aa26.28■■□□□ 1.8
PKNOX1-209ENST00000560448 BAZ1AQ9NRL2 1556 aaPredicted RBP26.14■■□□□ 1.78
PKNOX1-209ENST00000560448 CECR2Q9BXF3 1484 aa26.1■■□□□ 1.77
PKNOX1-209ENST00000560448 SMARCA4P51532 1647 aa26.09■■□□□ 1.77
PKNOX1-209ENST00000560448 SMARCA2P51531 1590 aa25.96■■□□□ 1.75
PKNOX1-209ENST00000560448 NCAPD3P42695 1498 aa25.92■■□□□ 1.74
PKNOX1-209ENST00000560448 PEG3Q9GZU2 1588 aa25.92■■□□□ 1.74
PKNOX1-209ENST00000560448 ATAD2BQ9ULI0 1458 aa25.9■■□□□ 1.74
PKNOX1-209ENST00000560448 MROH2BQ7Z745 1585 aa25.88■■□□□ 1.73
PKNOX1-209ENST00000560448 HMGXB3Q12766 1538 aa25.83■■□□□ 1.73
PKNOX1-209ENST00000560448 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
PKNOX1-209ENST00000560448 RSF1Q96T23 1441 aaPredicted RBP25.67■■□□□ 1.7
PKNOX1-209ENST00000560448 WIZO95785 1651 aa25.59■■□□□ 1.69
PKNOX1-209ENST00000560448 TOP2AP11388 1531 aaKnown RBP25.43■■□□□ 1.66
PKNOX1-209ENST00000560448 LAMC3Q9Y6N6 1575 aa25.24■■□□□ 1.63
PKNOX1-209ENST00000560448 CADPSQ9ULU8 1353 aa25.15■■□□□ 1.62
PKNOX1-209ENST00000560448 NESP48681 1621 aa25.09■■□□□ 1.61
PKNOX1-209ENST00000560448 CCDC88BA6NC98 1476 aa25.06■■□□□ 1.6
PKNOX1-209ENST00000560448 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
PKNOX1-209ENST00000560448 CFTRP13569 1480 aa25.04■■□□□ 1.6
PKNOX1-209ENST00000560448 ERCC6Q03468 1493 aa25.04■■□□□ 1.6
PKNOX1-209ENST00000560448 SUPT5HO00267 1087 aaKnown RBP25.02■■□□□ 1.6
PKNOX1-209ENST00000560448 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
PKNOX1-209ENST00000560448 KIF21AQ7Z4S6 1674 aa24.85■■□□□ 1.57
PKNOX1-209ENST00000560448 FANCD2Q9BXW9 1451 aa24.83■■□□□ 1.57
PKNOX1-209ENST00000560448 CEP164Q9UPV0 1460 aa24.81■■□□□ 1.56
PKNOX1-209ENST00000560448 CUX2O14529 1486 aa24.8■■□□□ 1.56
PKNOX1-209ENST00000560448 THOC2Q8NI27 1593 aaKnown RBP24.77■■□□□ 1.56
PKNOX1-209ENST00000560448 MRC2Q9UBG0 1479 aa24.74■■□□□ 1.55
PKNOX1-209ENST00000560448 WDR62O43379 1518 aa24.67■■□□□ 1.54
PKNOX1-209ENST00000560448 ABCC8Q09428 1581 aa24.59■■□□□ 1.53
PKNOX1-209ENST00000560448 URB2Q14146 1524 aaKnown RBP24.53■■□□□ 1.52
PKNOX1-209ENST00000560448 DNMBPQ6XZF7 1577 aa24.47■■□□□ 1.51
PKNOX1-209ENST00000560448 TOPBP1Q92547 1522 aa24.45■■□□□ 1.5
PKNOX1-209ENST00000560448 IFT140Q96RY7 1462 aa24.32■■□□□ 1.48
PKNOX1-209ENST00000560448 CUX1P39880 1505 aa24.28■■□□□ 1.48
PKNOX1-209ENST00000560448 POLA1P09884 1462 aaPredicted RBP24.25■■□□□ 1.47
PKNOX1-209ENST00000560448 WRNQ14191 1432 aaPredicted RBP eCLIP24.24■■□□□ 1.47
PKNOX1-209ENST00000560448 FGD5Q6ZNL6 1462 aa24.19■■□□□ 1.46
PKNOX1-209ENST00000560448 TOP2BQ02880 1626 aa24.18■■□□□ 1.46
PKNOX1-209ENST00000560448 BIVM-ERCC5R4GMW8 1640 aa24.18■■□□□ 1.46
PKNOX1-209ENST00000560448 TARBP1Q13395 1621 aaKnown RBP24.16■■□□□ 1.46
PKNOX1-209ENST00000560448 WDR97A6NE52 1622 aa24.16■■□□□ 1.46
PKNOX1-209ENST00000560448 SOGA1O94964 1423 aa24.14■■□□□ 1.46
PKNOX1-209ENST00000560448 DNAJC5Q9H3Z4 198 aa24.13■■□□□ 1.45
PKNOX1-209ENST00000560448 SYNJ1O43426 1573 aa24.11■■□□□ 1.45
PKNOX1-209ENST00000560448 RAD54L2Q9Y4B4 1467 aa24.06■■□□□ 1.44
PKNOX1-209ENST00000560448 ZNF608Q9ULD9 1512 aaPredicted RBP24.06■■□□□ 1.44
PKNOX1-209ENST00000560448 EIF4G3O43432 1585 aaKnown RBP24.04■■□□□ 1.44
PKNOX1-209ENST00000560448 ABCA10Q8WWZ4 1543 aa24.04■■□□□ 1.44
PKNOX1-209ENST00000560448 AQRO60306 1485 aaKnown RBP eCLIP23.95■■□□□ 1.42
PKNOX1-209ENST00000560448 TDRD9Q8NDG6 1382 aaKnown RBP23.93■■□□□ 1.42
PKNOX1-209ENST00000560448 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
PKNOX1-209ENST00000560448 ABCA5Q8WWZ7 1642 aa23.9■■□□□ 1.42
PKNOX1-209ENST00000560448 GRIN2BQ13224 1484 aa23.89■■□□□ 1.42
PKNOX1-209ENST00000560448 MAGI1Q96QZ7 1491 aaPredicted RBP23.85■■□□□ 1.41
PKNOX1-209ENST00000560448 PBRM1Q86U86 1689 aa23.81■■□□□ 1.4
PKNOX1-209ENST00000560448 ERICH3Q5RHP9 1530 aa23.78■■□□□ 1.4
PKNOX1-209ENST00000560448 SNAPC4Q5SXM2 1469 aa23.77■■□□□ 1.4
PKNOX1-209ENST00000560448 KIF27Q86VH2 1401 aa23.75■■□□□ 1.39
PKNOX1-209ENST00000560448 OSCARQ8IYS5 282 aa23.75■■□□□ 1.39
PKNOX1-209ENST00000560448 SYNJ2O15056 1496 aa23.73■■□□□ 1.39
PKNOX1-209ENST00000560448 TRIM41Q8WV44 630 aa23.73■■□□□ 1.39
PKNOX1-209ENST00000560448 CHD1O14646 1710 aa23.68■■□□□ 1.38
PKNOX1-209ENST00000560448 CHMP7Q8WUX9 453 aaPredicted RBP23.66■■□□□ 1.38
PKNOX1-209ENST00000560448 FHAD1B1AJZ9 1412 aa23.66■■□□□ 1.38
PKNOX1-209ENST00000560448 ADAMTS12P58397 1594 aa23.65■■□□□ 1.38
PKNOX1-209ENST00000560448 FBLN2P98095 1184 aa23.61■■□□□ 1.37
PKNOX1-209ENST00000560448 CUL7Q14999 1698 aa23.59■■□□□ 1.37
PKNOX1-209ENST00000560448 IGF1RP08069 1367 aa23.57■■□□□ 1.36
PKNOX1-209ENST00000560448 GRIN2AQ12879 1464 aa23.57■■□□□ 1.36
PKNOX1-209ENST00000560448 CHIC1Q5VXU3 224 aa23.49■■□□□ 1.35
PKNOX1-209ENST00000560448 EEA1Q15075 1411 aa23.48■■□□□ 1.35
PKNOX1-209ENST00000560448 CLASP1Q7Z460 1538 aa23.47■■□□□ 1.35
PKNOX1-209ENST00000560448 NUP160Q12769 1436 aa23.47■■□□□ 1.35
PKNOX1-209ENST00000560448 CARMIL1Q5VZK9 1371 aa23.45■■□□□ 1.35
PKNOX1-209ENST00000560448 RUSC2Q8N2Y8 1516 aa23.41■■□□□ 1.34
PKNOX1-209ENST00000560448 CEP170Q5SW79 1584 aa23.4■■□□□ 1.34
PKNOX1-209ENST00000560448 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
PKNOX1-209ENST00000560448 ARHGEF11O15085 1522 aa23.33■■□□□ 1.33
PKNOX1-209ENST00000560448 PRXQ9BXM0 1461 aa23.31■■□□□ 1.32
PKNOX1-209ENST00000560448 KIAA0586Q9BVV6 1533 aa23.3■■□□□ 1.32
PKNOX1-209ENST00000560448 CSRNP3Q8WYN3 585 aa23.3■■□□□ 1.32
PKNOX1-209ENST00000560448 RIMBP3CA6NJZ7 1639 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms