RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 NISCHQ9Y2I1 1504 aa30.75■■■□□ 2.51
CARMIL3-203ENST00000560349 CCDC180Q9P1Z9 1646 aa26.37■■□□□ 1.81
CARMIL3-203ENST00000560349 SHROOM4Q9ULL8 1493 aa25.94■■□□□ 1.74
CARMIL3-203ENST00000560349 ZCCHC6Q5VYS8 1495 aaKnown RBP25.88■■□□□ 1.73
CARMIL3-203ENST00000560349 DCAF8L2P0C7V8 631 aa25.86■■□□□ 1.73
CARMIL3-203ENST00000560349 ABCC9O60706 1549 aa25.15■■□□□ 1.62
CARMIL3-203ENST00000560349 DCAF1Q9Y4B6 1507 aa25.14■■□□□ 1.61
CARMIL3-203ENST00000560349 SUPT5HO00267 1087 aaKnown RBP25.11■■□□□ 1.61
CARMIL3-203ENST00000560349 SCRIBQ14160 1630 aa24.76■■□□□ 1.55
CARMIL3-203ENST00000560349 MYO15BQ96JP2 1530 aa24.62■■□□□ 1.53
CARMIL3-203ENST00000560349 NACADO15069 1562 aa24.54■■□□□ 1.52
CARMIL3-203ENST00000560349 RB1CC1Q8TDY2 1594 aa24.32■■□□□ 1.48
CARMIL3-203ENST00000560349 RSF1Q96T23 1441 aaPredicted RBP24.12■■□□□ 1.45
CARMIL3-203ENST00000560349 CECR2Q9BXF3 1484 aa24.1■■□□□ 1.45
CARMIL3-203ENST00000560349 CHIC1Q5VXU3 224 aa24.02■■□□□ 1.44
CARMIL3-203ENST00000560349 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
CARMIL3-203ENST00000560349 PABPN1Q86U42 306 aaKnown RBP eCLIP23.95■■□□□ 1.42
CARMIL3-203ENST00000560349 MROH2BQ7Z745 1585 aa23.92■■□□□ 1.42
CARMIL3-203ENST00000560349 WIZO95785 1651 aa23.77■■□□□ 1.4
CARMIL3-203ENST00000560349 BICRAQ9NZM4 1560 aa23.7■■□□□ 1.38
CARMIL3-203ENST00000560349 BAZ1AQ9NRL2 1556 aaPredicted RBP23.65■■□□□ 1.38
CARMIL3-203ENST00000560349 SMARCA4P51532 1647 aa23.56■■□□□ 1.36
CARMIL3-203ENST00000560349 TRIM41Q8WV44 630 aa23.37■■□□□ 1.33
CARMIL3-203ENST00000560349 LOC105371045A0A1W2PR82 267 aa23.36■■□□□ 1.33
CARMIL3-203ENST00000560349 TOP2AP11388 1531 aaKnown RBP23.33■■□□□ 1.32
CARMIL3-203ENST00000560349 FAM9AQ8IZU1 332 aaPredicted RBP23.26■■□□□ 1.31
CARMIL3-203ENST00000560349 CCDC88BA6NC98 1476 aa23.25■■□□□ 1.31
CARMIL3-203ENST00000560349 SMARCA2P51531 1590 aa23.2■■□□□ 1.31
CARMIL3-203ENST00000560349 EHMT2Q96KQ7 1210 aa23.18■■□□□ 1.3
CARMIL3-203ENST00000560349 ATAD2BQ9ULI0 1458 aa23.11■■□□□ 1.29
CARMIL3-203ENST00000560349 EIF4G1Q04637 1599 aaKnown RBP23.1■■□□□ 1.29
CARMIL3-203ENST00000560349 PEG3Q9GZU2 1588 aa23.07■■□□□ 1.28
CARMIL3-203ENST00000560349 ABCC8Q09428 1581 aa23.06■■□□□ 1.28
CARMIL3-203ENST00000560349 BAZ1BQ9UIG0 1483 aaKnown RBP23.04■■□□□ 1.28
CARMIL3-203ENST00000560349 NCAPD3P42695 1498 aa22.73■■□□□ 1.23
CARMIL3-203ENST00000560349 SOGA1O94964 1423 aa22.7■■□□□ 1.22
CARMIL3-203ENST00000560349 PCGF6Q9BYE7 350 aa22.69■■□□□ 1.22
CARMIL3-203ENST00000560349 WRNQ14191 1432 aaPredicted RBP eCLIP22.68■■□□□ 1.22
CARMIL3-203ENST00000560349 HMGXB3Q12766 1538 aa22.67■■□□□ 1.22
CARMIL3-203ENST00000560349 RUSC2Q8N2Y8 1516 aa22.63■■□□□ 1.21
CARMIL3-203ENST00000560349 SYNJ1O43426 1573 aa22.61■■□□□ 1.21
CARMIL3-203ENST00000560349 CC2D2AQ9P2K1 1620 aa22.57■■□□□ 1.2
CARMIL3-203ENST00000560349 CSRNP3Q8WYN3 585 aa22.46■■□□□ 1.19
CARMIL3-203ENST00000560349 PPARGC1BQ86YN6 1023 aaKnown RBP22.44■■□□□ 1.18
CARMIL3-203ENST00000560349 CFTRP13569 1480 aa22.4■■□□□ 1.18
CARMIL3-203ENST00000560349 UBTFP17480 764 aaKnown RBP22.38■■□□□ 1.17
CARMIL3-203ENST00000560349 DNAJC5BQ9UF47 199 aa22.33■■□□□ 1.17
CARMIL3-203ENST00000560349 TOP2BQ02880 1626 aa22.33■■□□□ 1.17
CARMIL3-203ENST00000560349 HRCP23327 699 aa22.33■■□□□ 1.16
CARMIL3-203ENST00000560349 EEA1Q15075 1411 aa22.32■■□□□ 1.16
CARMIL3-203ENST00000560349 CUX1P39880 1505 aa22.31■■□□□ 1.16
CARMIL3-203ENST00000560349 CADPSQ9ULU8 1353 aa22.29■■□□□ 1.16
CARMIL3-203ENST00000560349 TRIM26Q12899 539 aaPredicted RBP22.29■■□□□ 1.16
CARMIL3-203ENST00000560349 CEP162Q5TB80 1403 aa22.26■■□□□ 1.15
CARMIL3-203ENST00000560349 TTBK1Q5TCY1 1321 aaPredicted RBP22.24■■□□□ 1.15
CARMIL3-203ENST00000560349 RANGAP1P46060 587 aaPredicted RBP22.24■■□□□ 1.15
CARMIL3-203ENST00000560349 BIVM-ERCC5R4GMW8 1640 aa22.24■■□□□ 1.15
CARMIL3-203ENST00000560349 GOLGA3Q08378 1498 aa22.22■■□□□ 1.15
CARMIL3-203ENST00000560349 NESP48681 1621 aa22.21■■□□□ 1.15
CARMIL3-203ENST00000560349 TNIKQ9UKE5 1360 aa22.2■■□□□ 1.14
CARMIL3-203ENST00000560349 RAPGEF2Q9Y4G8 1499 aa22.16■■□□□ 1.14
CARMIL3-203ENST00000560349 CEP164Q9UPV0 1460 aa22.15■■□□□ 1.14
CARMIL3-203ENST00000560349 PRDM2Q13029 1718 aa22.12■■□□□ 1.13
CARMIL3-203ENST00000560349 FANCD2Q9BXW9 1451 aa22.1■■□□□ 1.13
CARMIL3-203ENST00000560349 KIF21BO75037 1637 aa22.08■■□□□ 1.13
CARMIL3-203ENST00000560349 KIF27Q86VH2 1401 aa22.02■■□□□ 1.12
CARMIL3-203ENST00000560349 FGD5Q6ZNL6 1462 aa22.02■■□□□ 1.12
CARMIL3-203ENST00000560349 CUX2O14529 1486 aa21.99■■□□□ 1.11
CARMIL3-203ENST00000560349 CLIP1P30622 1438 aa21.98■■□□□ 1.11
CARMIL3-203ENST00000560349 PRXQ9BXM0 1461 aa21.95■■□□□ 1.1
CARMIL3-203ENST00000560349 RAD54L2Q9Y4B4 1467 aa21.91■■□□□ 1.1
CARMIL3-203ENST00000560349 TOPBP1Q92547 1522 aa21.88■■□□□ 1.09
CARMIL3-203ENST00000560349 LAMC3Q9Y6N6 1575 aa21.86■■□□□ 1.09
CARMIL3-203ENST00000560349 IGF1RP08069 1367 aa21.85■■□□□ 1.09
CARMIL3-203ENST00000560349 DNMBPQ6XZF7 1577 aa21.84■■□□□ 1.09
CARMIL3-203ENST00000560349 POLA1P09884 1462 aaPredicted RBP21.84■■□□□ 1.09
CARMIL3-203ENST00000560349 ERICH3Q5RHP9 1530 aa21.83■■□□□ 1.09
CARMIL3-203ENST00000560349 URB2Q14146 1524 aaKnown RBP21.83■■□□□ 1.08
CARMIL3-203ENST00000560349 PDS5BQ9NTI5 1447 aa21.77■■□□□ 1.08
CARMIL3-203ENST00000560349 VPS8Q8N3P4 1428 aa21.77■■□□□ 1.08
CARMIL3-203ENST00000560349 KIF21AQ7Z4S6 1674 aa21.77■■□□□ 1.07
CARMIL3-203ENST00000560349 CARMIL1Q5VZK9 1371 aa21.76■■□□□ 1.07
CARMIL3-203ENST00000560349 TDRD9Q8NDG6 1382 aaKnown RBP21.71■■□□□ 1.07
CARMIL3-203ENST00000560349 ARAP1Q96P48 1450 aa21.7■■□□□ 1.06
CARMIL3-203ENST00000560349 ABCA10Q8WWZ4 1543 aa21.69■■□□□ 1.06
CARMIL3-203ENST00000560349 APLP2Q06481 763 aa21.68■■□□□ 1.06
CARMIL3-203ENST00000560349 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.67■■□□□ 1.06
CARMIL3-203ENST00000560349 ARHGAP35Q9NRY4 1499 aa21.62■■□□□ 1.05
CARMIL3-203ENST00000560349 P3H3Q8IVL6 736 aa21.62■■□□□ 1.05
CARMIL3-203ENST00000560349 KANK4Q5T7N3 995 aaPredicted RBP21.55■■□□□ 1.04
CARMIL3-203ENST00000560349 HNRNPUL2Q1KMD3 747 aaKnown RBP21.54■■□□□ 1.04
CARMIL3-203ENST00000560349 WDR97A6NE52 1622 aa21.53■■□□□ 1.04
CARMIL3-203ENST00000560349 GAPVD1Q14C86 1478 aa21.52■■□□□ 1.04
CARMIL3-203ENST00000560349 CCER1Q8TC90 406 aaPredicted RBP21.52■■□□□ 1.03
CARMIL3-203ENST00000560349 MRC2Q9UBG0 1479 aa21.48■■□□□ 1.03
CARMIL3-203ENST00000560349 ABCA5Q8WWZ7 1642 aa21.47■■□□□ 1.03
CARMIL3-203ENST00000560349 AQRO60306 1485 aaKnown RBP eCLIP21.47■■□□□ 1.03
CARMIL3-203ENST00000560349 ATP1B4Q9UN42 357 aaPredicted RBP21.46■■□□□ 1.03
CARMIL3-203ENST00000560349 TARBP1Q13395 1621 aaKnown RBP21.46■■□□□ 1.03
CARMIL3-203ENST00000560349 CUL7Q14999 1698 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms