RNA–Protein interactions for RNA: ENST00000559289.1

SHC4-206, Transcript of SHC adaptor protein 4, humanhuman

TSL 3

Gene SHC4, Length 864 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHC4-206ENST00000559289 NISCHQ9Y2I1 1504 aa14.24□□□□□ -0.13
SHC4-206ENST00000559289 AEBP2Q6ZN18 517 aaPredicted RBP13.79□□□□□ -0.2
SHC4-206ENST00000559289 CHIC1Q5VXU3 224 aa13.02□□□□□ -0.33
SHC4-206ENST00000559289 CCDC180Q9P1Z9 1646 aa12.59□□□□□ -0.39
SHC4-206ENST00000559289 ABCC9O60706 1549 aa12.11□□□□□ -0.47
SHC4-206ENST00000559289 SENP3Q9H4L4 574 aaPredicted RBP11.99□□□□□ -0.49
SHC4-206ENST00000559289 ZCCHC6Q5VYS8 1495 aaKnown RBP11.91□□□□□ -0.5
SHC4-206ENST00000559289 DCAF1Q9Y4B6 1507 aa11.79□□□□□ -0.52
SHC4-206ENST00000559289 MYO15BQ96JP2 1530 aa11.77□□□□□ -0.52
SHC4-206ENST00000559289 NACADO15069 1562 aa11.77□□□□□ -0.53
SHC4-206ENST00000559289 DCAF8L2P0C7V8 631 aa11.74□□□□□ -0.53
SHC4-206ENST00000559289 RB1CC1Q8TDY2 1594 aa11.73□□□□□ -0.53
SHC4-206ENST00000559289 PHF23Q9BUL5 403 aaPredicted RBP11.72□□□□□ -0.53
SHC4-206ENST00000559289 POTEDQ86YR6 584 aa11.7□□□□□ -0.54
SHC4-206ENST00000559289 UNC13AQ9UPW8 1703 aa11.55□□□□□ -0.56
SHC4-206ENST00000559289 SCRIBQ14160 1630 aa11.5□□□□□ -0.57
SHC4-206ENST00000559289 BICRAQ9NZM4 1560 aa11.44□□□□□ -0.58
SHC4-206ENST00000559289 PABPN1Q86U42 306 aaKnown RBP eCLIP11.34□□□□□ -0.59
SHC4-206ENST00000559289 SHROOM4Q9ULL8 1493 aa11.33□□□□□ -0.6
SHC4-206ENST00000559289 FOXD1Q16676 465 aa11.19□□□□□ -0.62
SHC4-206ENST00000559289 CECR2Q9BXF3 1484 aa11.09□□□□□ -0.63
SHC4-206ENST00000559289 EIF4G1Q04637 1599 aaKnown RBP11.08□□□□□ -0.64
SHC4-206ENST00000559289 SMARCA4P51532 1647 aa11.02□□□□□ -0.64
SHC4-206ENST00000559289 BAZ1AQ9NRL2 1556 aaPredicted RBP11□□□□□ -0.65
SHC4-206ENST00000559289 MROH2BQ7Z745 1585 aa10.99□□□□□ -0.65
SHC4-206ENST00000559289 CC2D2AQ9P2K1 1620 aa10.99□□□□□ -0.65
SHC4-206ENST00000559289 DNAJC5BQ9UF47 199 aa10.99□□□□□ -0.65
SHC4-206ENST00000559289 PEG3Q9GZU2 1588 aa10.92□□□□□ -0.66
SHC4-206ENST00000559289 RSF1Q96T23 1441 aaPredicted RBP10.92□□□□□ -0.66
SHC4-206ENST00000559289 WIZO95785 1651 aa10.9□□□□□ -0.66
SHC4-206ENST00000559289 ATAD2BQ9ULI0 1458 aa10.9□□□□□ -0.66
SHC4-206ENST00000559289 SMARCA2P51531 1590 aa10.87□□□□□ -0.67
SHC4-206ENST00000559289 NCAPD3P42695 1498 aa10.86□□□□□ -0.67
SHC4-206ENST00000559289 MSH5O43196 834 aa10.84□□□□□ -0.67
SHC4-206ENST00000559289 HMGXB3Q12766 1538 aa10.84□□□□□ -0.67
SHC4-206ENST00000559289 BAZ1BQ9UIG0 1483 aaKnown RBP10.8□□□□□ -0.68
SHC4-206ENST00000559289 TOP2AP11388 1531 aaKnown RBP10.76□□□□□ -0.69
SHC4-206ENST00000559289 SUPT5HO00267 1087 aaKnown RBP10.72□□□□□ -0.69
SHC4-206ENST00000559289 CCDC88BA6NC98 1476 aa10.64□□□□□ -0.71
SHC4-206ENST00000559289 NESP48681 1621 aa10.57□□□□□ -0.72
SHC4-206ENST00000559289 LAMC3Q9Y6N6 1575 aa10.55□□□□□ -0.72
SHC4-206ENST00000559289 CFTRP13569 1480 aa10.54□□□□□ -0.72
SHC4-206ENST00000559289 CADPSQ9ULU8 1353 aa10.53□□□□□ -0.72
SHC4-206ENST00000559289 PRDM2Q13029 1718 aa10.5□□□□□ -0.73
SHC4-206ENST00000559289 KIF21AQ7Z4S6 1674 aa10.47□□□□□ -0.73
SHC4-206ENST00000559289 FANCD2Q9BXW9 1451 aa10.42□□□□□ -0.74
SHC4-206ENST00000559289 PDS5BQ9NTI5 1447 aa10.42□□□□□ -0.74
SHC4-206ENST00000559289 THOC2Q8NI27 1593 aaKnown RBP10.39□□□□□ -0.75
SHC4-206ENST00000559289 ERCC6Q03468 1493 aa10.38□□□□□ -0.75
SHC4-206ENST00000559289 CEP164Q9UPV0 1460 aa10.38□□□□□ -0.75
SHC4-206ENST00000559289 PIAS4Q8N2W9 510 aaPredicted RBP10.35□□□□□ -0.75
SHC4-206ENST00000559289 URB2Q14146 1524 aaKnown RBP10.34□□□□□ -0.75
SHC4-206ENST00000559289 MRC2Q9UBG0 1479 aa10.34□□□□□ -0.75
SHC4-206ENST00000559289 WDR62O43379 1518 aa10.33□□□□□ -0.76
SHC4-206ENST00000559289 ABCC8Q09428 1581 aa10.32□□□□□ -0.76
SHC4-206ENST00000559289 CUX1P39880 1505 aa10.3□□□□□ -0.76
SHC4-206ENST00000559289 DNMBPQ6XZF7 1577 aa10.3□□□□□ -0.76
SHC4-206ENST00000559289 TOPBP1Q92547 1522 aa10.29□□□□□ -0.76
SHC4-206ENST00000559289 SYNJ1O43426 1573 aa10.28□□□□□ -0.76
SHC4-206ENST00000559289 BIVM-ERCC5R4GMW8 1640 aa10.27□□□□□ -0.77
SHC4-206ENST00000559289 WRNQ14191 1432 aaPredicted RBP eCLIP10.26□□□□□ -0.77
SHC4-206ENST00000559289 TOP2BQ02880 1626 aa10.25□□□□□ -0.77
SHC4-206ENST00000559289 CUX2O14529 1486 aa10.24□□□□□ -0.77
SHC4-206ENST00000559289 POLA1P09884 1462 aaPredicted RBP10.22□□□□□ -0.77
SHC4-206ENST00000559289 FGD5Q6ZNL6 1462 aa10.22□□□□□ -0.77
SHC4-206ENST00000559289 TARBP1Q13395 1621 aaKnown RBP10.19□□□□□ -0.78
SHC4-206ENST00000559289 WDR97A6NE52 1622 aa10.18□□□□□ -0.78
SHC4-206ENST00000559289 RAD54L2Q9Y4B4 1467 aa10.17□□□□□ -0.78
SHC4-206ENST00000559289 IFT140Q96RY7 1462 aa10.16□□□□□ -0.78
SHC4-206ENST00000559289 SOGA1O94964 1423 aa10.15□□□□□ -0.79
SHC4-206ENST00000559289 ZNF608Q9ULD9 1512 aaPredicted RBP10.13□□□□□ -0.79
SHC4-206ENST00000559289 ABCA10Q8WWZ4 1543 aa10.12□□□□□ -0.79
SHC4-206ENST00000559289 EIF4G3O43432 1585 aaKnown RBP10.1□□□□□ -0.79
SHC4-206ENST00000559289 TRIM41Q8WV44 630 aa10.1□□□□□ -0.79
SHC4-206ENST00000559289 ABCA5Q8WWZ7 1642 aa10.1□□□□□ -0.79
SHC4-206ENST00000559289 TDRD9Q8NDG6 1382 aaKnown RBP10.08□□□□□ -0.8
SHC4-206ENST00000559289 AQRO60306 1485 aaKnown RBP eCLIP10.08□□□□□ -0.8
SHC4-206ENST00000559289 PBRM1Q86U86 1689 aa10.06□□□□□ -0.8
SHC4-206ENST00000559289 RUSC2Q8N2Y8 1516 aa10.05□□□□□ -0.8
SHC4-206ENST00000559289 GAPVD1Q14C86 1478 aa10.04□□□□□ -0.8
SHC4-206ENST00000559289 KIF27Q86VH2 1401 aa10.01□□□□□ -0.81
SHC4-206ENST00000559289 GRIN2BQ13224 1484 aa10.01□□□□□ -0.81
SHC4-206ENST00000559289 ERICH3Q5RHP9 1530 aa10□□□□□ -0.81
SHC4-206ENST00000559289 SNAPC4Q5SXM2 1469 aa9.99□□□□□ -0.81
SHC4-206ENST00000559289 IGF1RP08069 1367 aa9.99□□□□□ -0.81
SHC4-206ENST00000559289 ADAMTS12P58397 1594 aa9.97□□□□□ -0.81
SHC4-206ENST00000559289 MAGI1Q96QZ7 1491 aaPredicted RBP9.97□□□□□ -0.81
SHC4-206ENST00000559289 CHD1O14646 1710 aa9.96□□□□□ -0.82
SHC4-206ENST00000559289 CUL7Q14999 1698 aa9.95□□□□□ -0.82
SHC4-206ENST00000559289 EEA1Q15075 1411 aa9.94□□□□□ -0.82
SHC4-206ENST00000559289 SYNJ2O15056 1496 aa9.93□□□□□ -0.82
SHC4-206ENST00000559289 FHAD1B1AJZ9 1412 aa9.93□□□□□ -0.82
SHC4-206ENST00000559289 PRXQ9BXM0 1461 aa9.91□□□□□ -0.82
SHC4-206ENST00000559289 CARMIL1Q5VZK9 1371 aa9.91□□□□□ -0.82
SHC4-206ENST00000559289 FAM9AQ8IZU1 332 aaPredicted RBP9.91□□□□□ -0.82
SHC4-206ENST00000559289 CSRNP3Q8WYN3 585 aa9.9□□□□□ -0.82
SHC4-206ENST00000559289 PPP6R1Q9UPN7 881 aa9.9□□□□□ -0.82
SHC4-206ENST00000559289 GRIN2AQ12879 1464 aa9.9□□□□□ -0.83
SHC4-206ENST00000559289 RAPGEF2Q9Y4G8 1499 aa9.87□□□□□ -0.83
SHC4-206ENST00000559289 KIF21BO75037 1637 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms