RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 NISCHQ9Y2I1 1504 aa37.64■■■■□ 3.62
LDLR-206ENST00000557958 CCDC180Q9P1Z9 1646 aa32.84■■■□□ 2.85
LDLR-206ENST00000557958 ABCC9O60706 1549 aa31.6■■■□□ 2.65
LDLR-206ENST00000557958 DCAF8L2P0C7V8 631 aa31.59■■■□□ 2.65
LDLR-206ENST00000557958 ZCCHC6Q5VYS8 1495 aaKnown RBP31.52■■■□□ 2.64
LDLR-206ENST00000557958 DCAF1Q9Y4B6 1507 aa31■■■□□ 2.55
LDLR-206ENST00000557958 SHROOM4Q9ULL8 1493 aa30.79■■■□□ 2.52
LDLR-206ENST00000557958 NACADO15069 1562 aa30.73■■■□□ 2.51
LDLR-206ENST00000557958 MYO15BQ96JP2 1530 aa30.72■■■□□ 2.51
LDLR-206ENST00000557958 RB1CC1Q8TDY2 1594 aa30.58■■■□□ 2.49
LDLR-206ENST00000557958 SCRIBQ14160 1630 aa30.36■■■□□ 2.45
LDLR-206ENST00000557958 UNC13AQ9UPW8 1703 aa29.89■■■□□ 2.38
LDLR-206ENST00000557958 PABPN1Q86U42 306 aaKnown RBP eCLIP29.85■■■□□ 2.37
LDLR-206ENST00000557958 BICRAQ9NZM4 1560 aa29.63■■■□□ 2.33
LDLR-206ENST00000557958 SUPT5HO00267 1087 aaKnown RBP29.61■■■□□ 2.33
LDLR-206ENST00000557958 CECR2Q9BXF3 1484 aa29.36■■■□□ 2.29
LDLR-206ENST00000557958 RSF1Q96T23 1441 aaPredicted RBP29.14■■■□□ 2.25
LDLR-206ENST00000557958 MROH2BQ7Z745 1585 aa29.11■■■□□ 2.25
LDLR-206ENST00000557958 BAZ1AQ9NRL2 1556 aaPredicted RBP29.08■■■□□ 2.25
LDLR-206ENST00000557958 SMARCA4P51532 1647 aa28.99■■■□□ 2.23
LDLR-206ENST00000557958 WIZO95785 1651 aa28.87■■■□□ 2.21
LDLR-206ENST00000557958 EIF4G1Q04637 1599 aaKnown RBP28.81■■■□□ 2.2
LDLR-206ENST00000557958 ATAD2BQ9ULI0 1458 aa28.63■■■□□ 2.17
LDLR-206ENST00000557958 SMARCA2P51531 1590 aa28.56■■■□□ 2.16
LDLR-206ENST00000557958 PEG3Q9GZU2 1588 aa28.55■■■□□ 2.16
LDLR-206ENST00000557958 TOP2AP11388 1531 aaKnown RBP28.49■■■□□ 2.15
LDLR-206ENST00000557958 CC2D2AQ9P2K1 1620 aa28.49■■■□□ 2.15
LDLR-206ENST00000557958 BAZ1BQ9UIG0 1483 aaKnown RBP28.49■■■□□ 2.15
LDLR-206ENST00000557958 CHIC1Q5VXU3 224 aa28.49■■■□□ 2.15
LDLR-206ENST00000557958 NCAPD3P42695 1498 aa28.39■■■□□ 2.14
LDLR-206ENST00000557958 CCDC88BA6NC98 1476 aa28.28■■■□□ 2.12
LDLR-206ENST00000557958 HMGXB3Q12766 1538 aa28.27■■■□□ 2.12
LDLR-206ENST00000557958 DNAJC5BQ9UF47 199 aa28.19■■■□□ 2.1
LDLR-206ENST00000557958 TRIM41Q8WV44 630 aa27.87■■■□□ 2.05
LDLR-206ENST00000557958 CADPSQ9ULU8 1353 aa27.72■■■□□ 2.03
LDLR-206ENST00000557958 CFTRP13569 1480 aa27.69■■■□□ 2.02
LDLR-206ENST00000557958 ABCC8Q09428 1581 aa27.62■■■□□ 2.01
LDLR-206ENST00000557958 NESP48681 1621 aa27.62■■■□□ 2.01
LDLR-206ENST00000557958 WRNQ14191 1432 aaPredicted RBP eCLIP27.46■■□□□ 1.99
LDLR-206ENST00000557958 LAMC3Q9Y6N6 1575 aa27.46■■□□□ 1.99
LDLR-206ENST00000557958 FANCD2Q9BXW9 1451 aa27.42■■□□□ 1.98
LDLR-206ENST00000557958 PRDM2Q13029 1718 aa27.41■■□□□ 1.98
LDLR-206ENST00000557958 LOC105371045A0A1W2PR82 267 aa27.36■■□□□ 1.97
LDLR-206ENST00000557958 PDS5BQ9NTI5 1447 aa27.35■■□□□ 1.97
LDLR-206ENST00000557958 SYNJ1O43426 1573 aa27.31■■□□□ 1.96
LDLR-206ENST00000557958 FAM9AQ8IZU1 332 aaPredicted RBP27.3■■□□□ 1.96
LDLR-206ENST00000557958 CEP164Q9UPV0 1460 aa27.27■■□□□ 1.96
LDLR-206ENST00000557958 CUX1P39880 1505 aa27.23■■□□□ 1.95
LDLR-206ENST00000557958 EEA1Q15075 1411 aa27.2■■□□□ 1.94
LDLR-206ENST00000557958 KIF21AQ7Z4S6 1674 aa27.19■■□□□ 1.94
LDLR-206ENST00000557958 TOP2BQ02880 1626 aa27.18■■□□□ 1.94
LDLR-206ENST00000557958 ERCC6Q03468 1493 aa27.14■■□□□ 1.93
LDLR-206ENST00000557958 BIVM-ERCC5R4GMW8 1640 aa27.11■■□□□ 1.93
LDLR-206ENST00000557958 SOGA1O94964 1423 aa27.07■■□□□ 1.92
LDLR-206ENST00000557958 URB2Q14146 1524 aaKnown RBP27.07■■□□□ 1.92
LDLR-206ENST00000557958 TOPBP1Q92547 1522 aa27.06■■□□□ 1.92
LDLR-206ENST00000557958 DNMBPQ6XZF7 1577 aa27.04■■□□□ 1.92
LDLR-206ENST00000557958 EHMT2Q96KQ7 1210 aa27.04■■□□□ 1.92
LDLR-206ENST00000557958 FGD5Q6ZNL6 1462 aa27.02■■□□□ 1.92
LDLR-206ENST00000557958 RUSC2Q8N2Y8 1516 aa26.99■■□□□ 1.91
LDLR-206ENST00000557958 MRC2Q9UBG0 1479 aa26.99■■□□□ 1.91
LDLR-206ENST00000557958 CSRNP3Q8WYN3 585 aa26.94■■□□□ 1.9
LDLR-206ENST00000557958 POLA1P09884 1462 aaPredicted RBP26.9■■□□□ 1.9
LDLR-206ENST00000557958 RAD54L2Q9Y4B4 1467 aa26.9■■□□□ 1.9
LDLR-206ENST00000557958 CUX2O14529 1486 aa26.83■■□□□ 1.89
LDLR-206ENST00000557958 KIF27Q86VH2 1401 aa26.79■■□□□ 1.88
LDLR-206ENST00000557958 WDR62O43379 1518 aa26.79■■□□□ 1.88
LDLR-206ENST00000557958 GOLGA3Q08378 1498 aa26.79■■□□□ 1.88
LDLR-206ENST00000557958 THOC2Q8NI27 1593 aaKnown RBP26.77■■□□□ 1.88
LDLR-206ENST00000557958 KIF21BO75037 1637 aa26.76■■□□□ 1.87
LDLR-206ENST00000557958 TNIKQ9UKE5 1360 aa26.75■■□□□ 1.87
LDLR-206ENST00000557958 TDRD9Q8NDG6 1382 aaKnown RBP26.71■■□□□ 1.87
LDLR-206ENST00000557958 ABCA10Q8WWZ4 1543 aa26.7■■□□□ 1.86
LDLR-206ENST00000557958 UBTFP17480 764 aaKnown RBP26.65■■□□□ 1.86
LDLR-206ENST00000557958 TARBP1Q13395 1621 aaKnown RBP26.61■■□□□ 1.85
LDLR-206ENST00000557958 CEP162Q5TB80 1403 aa26.61■■□□□ 1.85
LDLR-206ENST00000557958 IFT140Q96RY7 1462 aa26.6■■□□□ 1.85
LDLR-206ENST00000557958 IGF1RP08069 1367 aa26.6■■□□□ 1.85
LDLR-206ENST00000557958 AQRO60306 1485 aaKnown RBP eCLIP26.56■■□□□ 1.843e-8■■■■□ 23.4
LDLR-206ENST00000557958 WDR97A6NE52 1622 aa26.55■■□□□ 1.84
LDLR-206ENST00000557958 GAPVD1Q14C86 1478 aa26.55■■□□□ 1.84
LDLR-206ENST00000557958 ERICH3Q5RHP9 1530 aa26.54■■□□□ 1.84
LDLR-206ENST00000557958 ZNF608Q9ULD9 1512 aaPredicted RBP26.53■■□□□ 1.84
LDLR-206ENST00000557958 PRXQ9BXM0 1461 aa26.51■■□□□ 1.83
LDLR-206ENST00000557958 RAPGEF2Q9Y4G8 1499 aa26.5■■□□□ 1.83
LDLR-206ENST00000557958 CARMIL1Q5VZK9 1371 aa26.49■■□□□ 1.83
LDLR-206ENST00000557958 PCGF6Q9BYE7 350 aa26.49■■□□□ 1.83
LDLR-206ENST00000557958 TRIM26Q12899 539 aaPredicted RBP26.48■■□□□ 1.83
LDLR-206ENST00000557958 ABCA5Q8WWZ7 1642 aa26.47■■□□□ 1.83
LDLR-206ENST00000557958 RANGAP1P46060 587 aaPredicted RBP26.41■■□□□ 1.82
LDLR-206ENST00000557958 GRIN2BQ13224 1484 aa26.36■■□□□ 1.81
LDLR-206ENST00000557958 EIF4G3O43432 1585 aaKnown RBP26.36■■□□□ 1.81
LDLR-206ENST00000557958 CLIP1P30622 1438 aa26.36■■□□□ 1.81
LDLR-206ENST00000557958 PBRM1Q86U86 1689 aa26.33■■□□□ 1.81
LDLR-206ENST00000557958 CUL7Q14999 1698 aa26.31■■□□□ 1.8
LDLR-206ENST00000557958 SNAPC4Q5SXM2 1469 aa26.26■■□□□ 1.79
LDLR-206ENST00000557958 FBLN2P98095 1184 aa26.25■■□□□ 1.79
LDLR-206ENST00000557958 FHAD1B1AJZ9 1412 aa26.23■■□□□ 1.79
LDLR-206ENST00000557958 CHMP7Q8WUX9 453 aaPredicted RBP26.19■■□□□ 1.78
LDLR-206ENST00000557958 ADAMTS12P58397 1594 aa26.18■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms