RNA–Protein interactions for RNA: ENST00000557181.5

APEX1-217, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 3

Gene APEX1, Length 566 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-217ENST00000557181 NISCHQ9Y2I1 1504 aa30.32■■■□□ 2.44
APEX1-217ENST00000557181 CCDC180Q9P1Z9 1646 aa26.92■■□□□ 1.9
APEX1-217ENST00000557181 ABCC9O60706 1549 aa26.14■■□□□ 1.77
APEX1-217ENST00000557181 DCAF8L2P0C7V8 631 aa25.38■■□□□ 1.65
APEX1-217ENST00000557181 ZCCHC6Q5VYS8 1495 aaKnown RBP25.3■■□□□ 1.64
APEX1-217ENST00000557181 RB1CC1Q8TDY2 1594 aa25.26■■□□□ 1.63
APEX1-217ENST00000557181 NACADO15069 1562 aa25.24■■□□□ 1.63
APEX1-217ENST00000557181 MYO15BQ96JP2 1530 aa25.11■■□□□ 1.61
APEX1-217ENST00000557181 DCAF1Q9Y4B6 1507 aa25.07■■□□□ 1.6
APEX1-217ENST00000557181 UNC13AQ9UPW8 1703 aa24.63■■□□□ 1.53
APEX1-217ENST00000557181 SCRIBQ14160 1630 aa24.6■■□□□ 1.53
APEX1-217ENST00000557181 PABPN1Q86U42 306 aaKnown RBP eCLIP24.44■■□□□ 1.5
APEX1-217ENST00000557181 BICRAQ9NZM4 1560 aa24.37■■□□□ 1.49
APEX1-217ENST00000557181 SHROOM4Q9ULL8 1493 aa24.21■■□□□ 1.47
APEX1-217ENST00000557181 EIF4G1Q04637 1599 aaKnown RBP23.78■■□□□ 1.4
APEX1-217ENST00000557181 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
APEX1-217ENST00000557181 CC2D2AQ9P2K1 1620 aa23.64■■□□□ 1.38
APEX1-217ENST00000557181 CECR2Q9BXF3 1484 aa23.56■■□□□ 1.36
APEX1-217ENST00000557181 BAZ1AQ9NRL2 1556 aaPredicted RBP23.53■■□□□ 1.36
APEX1-217ENST00000557181 SMARCA4P51532 1647 aa23.51■■□□□ 1.35
APEX1-217ENST00000557181 SMARCA2P51531 1590 aa23.35■■□□□ 1.33
APEX1-217ENST00000557181 MROH2BQ7Z745 1585 aa23.35■■□□□ 1.33
APEX1-217ENST00000557181 ATAD2BQ9ULI0 1458 aa23.3■■□□□ 1.32
APEX1-217ENST00000557181 NCAPD3P42695 1498 aa23.24■■□□□ 1.31
APEX1-217ENST00000557181 PEG3Q9GZU2 1588 aa23.23■■□□□ 1.31
APEX1-217ENST00000557181 BAZ1BQ9UIG0 1483 aaKnown RBP23.19■■□□□ 1.3
APEX1-217ENST00000557181 HMGXB3Q12766 1538 aa23.18■■□□□ 1.3
APEX1-217ENST00000557181 RSF1Q96T23 1441 aaPredicted RBP23.16■■□□□ 1.3
APEX1-217ENST00000557181 WIZO95785 1651 aa23.15■■□□□ 1.3
APEX1-217ENST00000557181 TOP2AP11388 1531 aaKnown RBP22.93■■□□□ 1.26
APEX1-217ENST00000557181 SUPT5HO00267 1087 aaKnown RBP22.85■■□□□ 1.25
APEX1-217ENST00000557181 LAMC3Q9Y6N6 1575 aa22.65■■□□□ 1.22
APEX1-217ENST00000557181 NESP48681 1621 aa22.64■■□□□ 1.21
APEX1-217ENST00000557181 CCDC88BA6NC98 1476 aa22.63■■□□□ 1.21
APEX1-217ENST00000557181 CADPSQ9ULU8 1353 aa22.61■■□□□ 1.21
APEX1-217ENST00000557181 ERCC6Q03468 1493 aa22.6■■□□□ 1.21
APEX1-217ENST00000557181 PDS5BQ9NTI5 1447 aa22.52■■□□□ 1.2
APEX1-217ENST00000557181 CFTRP13569 1480 aa22.49■■□□□ 1.19
APEX1-217ENST00000557181 PRDM2Q13029 1718 aa22.43■■□□□ 1.18
APEX1-217ENST00000557181 KIF21AQ7Z4S6 1674 aa22.42■■□□□ 1.18
APEX1-217ENST00000557181 FANCD2Q9BXW9 1451 aa22.37■■□□□ 1.17
APEX1-217ENST00000557181 CEP164Q9UPV0 1460 aa22.36■■□□□ 1.17
APEX1-217ENST00000557181 THOC2Q8NI27 1593 aaKnown RBP22.26■■□□□ 1.15
APEX1-217ENST00000557181 MRC2Q9UBG0 1479 aa22.26■■□□□ 1.15
APEX1-217ENST00000557181 CUX2O14529 1486 aa22.21■■□□□ 1.15
APEX1-217ENST00000557181 WDR62O43379 1518 aa22.15■■□□□ 1.14
APEX1-217ENST00000557181 URB2Q14146 1524 aaKnown RBP22.1■■□□□ 1.13
APEX1-217ENST00000557181 ABCC8Q09428 1581 aa22.08■■□□□ 1.12
APEX1-217ENST00000557181 DNMBPQ6XZF7 1577 aa22.04■■□□□ 1.12
APEX1-217ENST00000557181 TOPBP1Q92547 1522 aa22.02■■□□□ 1.12
APEX1-217ENST00000557181 CUX1P39880 1505 aa21.91■■□□□ 1.1
APEX1-217ENST00000557181 WRNQ14191 1432 aaPredicted RBP eCLIP21.89■■□□□ 1.15e-6■■■■■ 29.2
APEX1-217ENST00000557181 IFT140Q96RY7 1462 aa21.86■■□□□ 1.09
APEX1-217ENST00000557181 POLA1P09884 1462 aaPredicted RBP21.84■■□□□ 1.09
APEX1-217ENST00000557181 FGD5Q6ZNL6 1462 aa21.84■■□□□ 1.09
APEX1-217ENST00000557181 TOP2BQ02880 1626 aa21.8■■□□□ 1.08
APEX1-217ENST00000557181 BIVM-ERCC5R4GMW8 1640 aa21.8■■□□□ 1.08
APEX1-217ENST00000557181 SYNJ1O43426 1573 aa21.8■■□□□ 1.08
APEX1-217ENST00000557181 SOGA1O94964 1423 aa21.79■■□□□ 1.08
APEX1-217ENST00000557181 RAD54L2Q9Y4B4 1467 aa21.74■■□□□ 1.07
APEX1-217ENST00000557181 TARBP1Q13395 1621 aaKnown RBP21.73■■□□□ 1.07
APEX1-217ENST00000557181 ZNF608Q9ULD9 1512 aaPredicted RBP21.69■■□□□ 1.06
APEX1-217ENST00000557181 EIF4G3O43432 1585 aaKnown RBP21.67■■□□□ 1.06
APEX1-217ENST00000557181 WDR97A6NE52 1622 aa21.64■■□□□ 1.05
APEX1-217ENST00000557181 ABCA10Q8WWZ4 1543 aa21.62■■□□□ 1.05
APEX1-217ENST00000557181 TDRD9Q8NDG6 1382 aaKnown RBP21.61■■□□□ 1.05
APEX1-217ENST00000557181 AQRO60306 1485 aaKnown RBP eCLIP21.61■■□□□ 1.053e-9■■■□□ 17.9
APEX1-217ENST00000557181 TRIM41Q8WV44 630 aa21.57■■□□□ 1.04
APEX1-217ENST00000557181 GAPVD1Q14C86 1478 aa21.54■■□□□ 1.04
APEX1-217ENST00000557181 ABCA5Q8WWZ7 1642 aa21.52■■□□□ 1.04
APEX1-217ENST00000557181 GRIN2BQ13224 1484 aa21.52■■□□□ 1.03
APEX1-217ENST00000557181 PBRM1Q86U86 1689 aa21.51■■□□□ 1.03
APEX1-217ENST00000557181 SNAPC4Q5SXM2 1469 aa21.46■■□□□ 1.03
APEX1-217ENST00000557181 KIF27Q86VH2 1401 aa21.45■■□□□ 1.02
APEX1-217ENST00000557181 MAGI1Q96QZ7 1491 aaPredicted RBP21.44■■□□□ 1.02
APEX1-217ENST00000557181 FBLN2P98095 1184 aa21.42■■□□□ 1.02
APEX1-217ENST00000557181 ERICH3Q5RHP9 1530 aa21.39■■□□□ 1.01
APEX1-217ENST00000557181 CHMP7Q8WUX9 453 aaPredicted RBP21.37■■□□□ 1.01
APEX1-217ENST00000557181 CHD1O14646 1710 aa21.37■■□□□ 1.01
APEX1-217ENST00000557181 CHIC1Q5VXU3 224 aa21.35■■□□□ 1.01
APEX1-217ENST00000557181 SYNJ2O15056 1496 aa21.34■■□□□ 1.01
APEX1-217ENST00000557181 ADAMTS12P58397 1594 aa21.33■■□□□ 1.01
APEX1-217ENST00000557181 OSCARQ8IYS5 282 aa21.33■■□□□ 1.01
APEX1-217ENST00000557181 FHAD1B1AJZ9 1412 aa21.29■■□□□ 1
APEX1-217ENST00000557181 CUL7Q14999 1698 aa21.28■■□□□ 1
APEX1-217ENST00000557181 IGF1RP08069 1367 aa21.24■□□□□ 0.99
APEX1-217ENST00000557181 GRIN2AQ12879 1464 aa21.22■□□□□ 0.99
APEX1-217ENST00000557181 DNAJC5Q9H3Z4 198 aa21.22■□□□□ 0.99
APEX1-217ENST00000557181 RUSC2Q8N2Y8 1516 aa21.22■□□□□ 0.99
APEX1-217ENST00000557181 CARMIL1Q5VZK9 1371 aa21.18■□□□□ 0.98
APEX1-217ENST00000557181 EEA1Q15075 1411 aa21.18■□□□□ 0.98
APEX1-217ENST00000557181 FAM9AQ8IZU1 332 aaPredicted RBP21.13■□□□□ 0.97
APEX1-217ENST00000557181 RAPGEF2Q9Y4G8 1499 aa21.09■□□□□ 0.97
APEX1-217ENST00000557181 CSRNP3Q8WYN3 585 aa21.09■□□□□ 0.97
APEX1-217ENST00000557181 CEP170Q5SW79 1584 aa21.09■□□□□ 0.97
APEX1-217ENST00000557181 NUP160Q12769 1436 aa21.08■□□□□ 0.97
APEX1-217ENST00000557181 CLASP1Q7Z460 1538 aa21.08■□□□□ 0.96
APEX1-217ENST00000557181 PRXQ9BXM0 1461 aa21.01■□□□□ 0.95
APEX1-217ENST00000557181 ARHGEF11O15085 1522 aa20.96■□□□□ 0.95
APEX1-217ENST00000557181 KIAA0586Q9BVV6 1533 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms