RNA–Protein interactions for RNA: ENST00000555604.1

PRKCH-217, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 361 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-217ENST00000555604 NISCHQ9Y2I1 1504 aa15.72■□□□□ 0.11
PRKCH-217ENST00000555604 CCDC180Q9P1Z9 1646 aa13.92□□□□□ -0.18
PRKCH-217ENST00000555604 ABCC9O60706 1549 aa13.44□□□□□ -0.26
PRKCH-217ENST00000555604 MYO15BQ96JP2 1530 aa13.13□□□□□ -0.31
PRKCH-217ENST00000555604 ZCCHC6Q5VYS8 1495 aaKnown RBP13.11□□□□□ -0.31
PRKCH-217ENST00000555604 NACADO15069 1562 aa13.11□□□□□ -0.31
PRKCH-217ENST00000555604 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.31
PRKCH-217ENST00000555604 RB1CC1Q8TDY2 1594 aa13.06□□□□□ -0.32
PRKCH-217ENST00000555604 DCAF8L2P0C7V8 631 aa13.05□□□□□ -0.32
PRKCH-217ENST00000555604 SHROOM4Q9ULL8 1493 aa12.64□□□□□ -0.39
PRKCH-217ENST00000555604 SCRIBQ14160 1630 aa12.62□□□□□ -0.39
PRKCH-217ENST00000555604 UNC13AQ9UPW8 1703 aa12.62□□□□□ -0.39
PRKCH-217ENST00000555604 BICRAQ9NZM4 1560 aa12.59□□□□□ -0.39
PRKCH-217ENST00000555604 PABPN1Q86U42 306 aaKnown RBP eCLIP12.58□□□□□ -0.4
PRKCH-217ENST00000555604 EIF4G1Q04637 1599 aaKnown RBP12.28□□□□□ -0.44
PRKCH-217ENST00000555604 DNAJC5BQ9UF47 199 aa12.21□□□□□ -0.45
PRKCH-217ENST00000555604 BAZ1AQ9NRL2 1556 aaPredicted RBP12.2□□□□□ -0.46
PRKCH-217ENST00000555604 CC2D2AQ9P2K1 1620 aa12.18□□□□□ -0.46
PRKCH-217ENST00000555604 CECR2Q9BXF3 1484 aa12.16□□□□□ -0.46
PRKCH-217ENST00000555604 SMARCA4P51532 1647 aa12.13□□□□□ -0.47
PRKCH-217ENST00000555604 SMARCA2P51531 1590 aa12.1□□□□□ -0.47
PRKCH-217ENST00000555604 NCAPD3P42695 1498 aa12.09□□□□□ -0.47
PRKCH-217ENST00000555604 ATAD2BQ9ULI0 1458 aa12.08□□□□□ -0.48
PRKCH-217ENST00000555604 PEG3Q9GZU2 1588 aa12.07□□□□□ -0.48
PRKCH-217ENST00000555604 MROH2BQ7Z745 1585 aa12.06□□□□□ -0.48
PRKCH-217ENST00000555604 HMGXB3Q12766 1538 aa12.02□□□□□ -0.48
PRKCH-217ENST00000555604 RSF1Q96T23 1441 aaPredicted RBP12.02□□□□□ -0.49
PRKCH-217ENST00000555604 BAZ1BQ9UIG0 1483 aaKnown RBP11.98□□□□□ -0.49
PRKCH-217ENST00000555604 WIZO95785 1651 aa11.91□□□□□ -0.5
PRKCH-217ENST00000555604 TOP2AP11388 1531 aaKnown RBP11.86□□□□□ -0.51
PRKCH-217ENST00000555604 SUPT5HO00267 1087 aaKnown RBP11.75□□□□□ -0.53
PRKCH-217ENST00000555604 CADPSQ9ULU8 1353 aa11.75□□□□□ -0.53
PRKCH-217ENST00000555604 LAMC3Q9Y6N6 1575 aa11.73□□□□□ -0.53
PRKCH-217ENST00000555604 CCDC88BA6NC98 1476 aa11.71□□□□□ -0.53
PRKCH-217ENST00000555604 PDS5BQ9NTI5 1447 aa11.69□□□□□ -0.54
PRKCH-217ENST00000555604 CFTRP13569 1480 aa11.69□□□□□ -0.54
PRKCH-217ENST00000555604 NESP48681 1621 aa11.64□□□□□ -0.55
PRKCH-217ENST00000555604 ERCC6Q03468 1493 aa11.63□□□□□ -0.55
PRKCH-217ENST00000555604 FANCD2Q9BXW9 1451 aa11.57□□□□□ -0.56
PRKCH-217ENST00000555604 CEP164Q9UPV0 1460 aa11.55□□□□□ -0.56
PRKCH-217ENST00000555604 PRDM2Q13029 1718 aa11.52□□□□□ -0.57
PRKCH-217ENST00000555604 CUX2O14529 1486 aa11.51□□□□□ -0.57
PRKCH-217ENST00000555604 MRC2Q9UBG0 1479 aa11.51□□□□□ -0.57
PRKCH-217ENST00000555604 ABCC8Q09428 1581 aa11.5□□□□□ -0.57
PRKCH-217ENST00000555604 KIF21AQ7Z4S6 1674 aa11.48□□□□□ -0.57
PRKCH-217ENST00000555604 THOC2Q8NI27 1593 aaKnown RBP11.46□□□□□ -0.57
PRKCH-217ENST00000555604 WDR62O43379 1518 aa11.45□□□□□ -0.58
PRKCH-217ENST00000555604 URB2Q14146 1524 aaKnown RBP11.4□□□□□ -0.58
PRKCH-217ENST00000555604 DNMBPQ6XZF7 1577 aa11.39□□□□□ -0.59
PRKCH-217ENST00000555604 TOPBP1Q92547 1522 aa11.38□□□□□ -0.59
PRKCH-217ENST00000555604 WRNQ14191 1432 aaPredicted RBP eCLIP11.35□□□□□ -0.59
PRKCH-217ENST00000555604 IFT140Q96RY7 1462 aa11.33□□□□□ -0.6
PRKCH-217ENST00000555604 CUX1P39880 1505 aa11.32□□□□□ -0.6
PRKCH-217ENST00000555604 POLA1P09884 1462 aaPredicted RBP11.29□□□□□ -0.6
PRKCH-217ENST00000555604 SOGA1O94964 1423 aa11.28□□□□□ -0.6
PRKCH-217ENST00000555604 TOP2BQ02880 1626 aa11.27□□□□□ -0.6
PRKCH-217ENST00000555604 FGD5Q6ZNL6 1462 aa11.27□□□□□ -0.6
PRKCH-217ENST00000555604 BIVM-ERCC5R4GMW8 1640 aa11.26□□□□□ -0.61
PRKCH-217ENST00000555604 WDR97A6NE52 1622 aa11.25□□□□□ -0.61
PRKCH-217ENST00000555604 TARBP1Q13395 1621 aaKnown RBP11.23□□□□□ -0.61
PRKCH-217ENST00000555604 SYNJ1O43426 1573 aa11.22□□□□□ -0.61
PRKCH-217ENST00000555604 ABCA10Q8WWZ4 1543 aa11.22□□□□□ -0.61
PRKCH-217ENST00000555604 RAD54L2Q9Y4B4 1467 aa11.2□□□□□ -0.62
PRKCH-217ENST00000555604 ZNF608Q9ULD9 1512 aaPredicted RBP11.18□□□□□ -0.62
PRKCH-217ENST00000555604 TRIM41Q8WV44 630 aa11.17□□□□□ -0.62
PRKCH-217ENST00000555604 TDRD9Q8NDG6 1382 aaKnown RBP11.16□□□□□ -0.62
PRKCH-217ENST00000555604 AQRO60306 1485 aaKnown RBP eCLIP11.15□□□□□ -0.62
PRKCH-217ENST00000555604 GAPVD1Q14C86 1478 aa11.15□□□□□ -0.62
PRKCH-217ENST00000555604 GRIN2BQ13224 1484 aa11.14□□□□□ -0.63
PRKCH-217ENST00000555604 EIF4G3O43432 1585 aaKnown RBP11.14□□□□□ -0.63
PRKCH-217ENST00000555604 KIF27Q86VH2 1401 aa11.13□□□□□ -0.63
PRKCH-217ENST00000555604 MAGI1Q96QZ7 1491 aaPredicted RBP11.12□□□□□ -0.63
PRKCH-217ENST00000555604 ABCA5Q8WWZ7 1642 aa11.1□□□□□ -0.63
PRKCH-217ENST00000555604 ERICH3Q5RHP9 1530 aa11.09□□□□□ -0.63
PRKCH-217ENST00000555604 CHIC1Q5VXU3 224 aa11.07□□□□□ -0.64
PRKCH-217ENST00000555604 OSCARQ8IYS5 282 aa11.07□□□□□ -0.64
PRKCH-217ENST00000555604 CHMP7Q8WUX9 453 aaPredicted RBP11.06□□□□□ -0.64
PRKCH-217ENST00000555604 SYNJ2O15056 1496 aa11.06□□□□□ -0.64
PRKCH-217ENST00000555604 SNAPC4Q5SXM2 1469 aa11.06□□□□□ -0.64
PRKCH-217ENST00000555604 FHAD1B1AJZ9 1412 aa11.05□□□□□ -0.64
PRKCH-217ENST00000555604 IGF1RP08069 1367 aa11.04□□□□□ -0.64
PRKCH-217ENST00000555604 EEA1Q15075 1411 aa11.04□□□□□ -0.64
PRKCH-217ENST00000555604 PBRM1Q86U86 1689 aa11.03□□□□□ -0.64
PRKCH-217ENST00000555604 FBLN2P98095 1184 aa11.01□□□□□ -0.65
PRKCH-217ENST00000555604 DNAJC5Q9H3Z4 198 aa11.01□□□□□ -0.65
PRKCH-217ENST00000555604 ADAMTS12P58397 1594 aa10.99□□□□□ -0.65
PRKCH-217ENST00000555604 CUL7Q14999 1698 aa10.99□□□□□ -0.65
PRKCH-217ENST00000555604 CARMIL1Q5VZK9 1371 aa10.99□□□□□ -0.65
PRKCH-217ENST00000555604 GRIN2AQ12879 1464 aa10.97□□□□□ -0.65
PRKCH-217ENST00000555604 CSRNP3Q8WYN3 585 aa10.96□□□□□ -0.65
PRKCH-217ENST00000555604 NUP160Q12769 1436 aa10.94□□□□□ -0.66
PRKCH-217ENST00000555604 RAPGEF2Q9Y4G8 1499 aa10.93□□□□□ -0.66
PRKCH-217ENST00000555604 CHD1O14646 1710 aa10.93□□□□□ -0.66
PRKCH-217ENST00000555604 RUSC2Q8N2Y8 1516 aa10.93□□□□□ -0.66
PRKCH-217ENST00000555604 PRXQ9BXM0 1461 aa10.92□□□□□ -0.66
PRKCH-217ENST00000555604 CLASP1Q7Z460 1538 aa10.89□□□□□ -0.67
PRKCH-217ENST00000555604 KIAA0586Q9BVV6 1533 aa10.89□□□□□ -0.67
PRKCH-217ENST00000555604 CEP170Q5SW79 1584 aa10.86□□□□□ -0.67
PRKCH-217ENST00000555604 JPH4Q96JJ6 628 aa10.85□□□□□ -0.67
PRKCH-217ENST00000555604 FAM9AQ8IZU1 332 aaPredicted RBP10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms