RNA–Protein interactions for RNA: ENST00000555323.1

SYNE2-219, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 389 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-219ENST00000555323 NISCHQ9Y2I1 1504 aa30.2■■■□□ 2.42
SYNE2-219ENST00000555323 CCDC180Q9P1Z9 1646 aa26.62■■□□□ 1.85
SYNE2-219ENST00000555323 ABCC9O60706 1549 aa25.74■■□□□ 1.71
SYNE2-219ENST00000555323 ZCCHC6Q5VYS8 1495 aaKnown RBP25.21■■□□□ 1.63
SYNE2-219ENST00000555323 DCAF8L2P0C7V8 631 aa25.08■■□□□ 1.61
SYNE2-219ENST00000555323 MYO15BQ96JP2 1530 aa25.05■■□□□ 1.6
SYNE2-219ENST00000555323 DCAF1Q9Y4B6 1507 aa25.04■■□□□ 1.6
SYNE2-219ENST00000555323 NACADO15069 1562 aa25.02■■□□□ 1.6
SYNE2-219ENST00000555323 RB1CC1Q8TDY2 1594 aa24.92■■□□□ 1.58
SYNE2-219ENST00000555323 UNC13AQ9UPW8 1703 aa24.28■■□□□ 1.48
SYNE2-219ENST00000555323 SCRIBQ14160 1630 aa24.28■■□□□ 1.48
SYNE2-219ENST00000555323 BICRAQ9NZM4 1560 aa24.17■■□□□ 1.46
SYNE2-219ENST00000555323 PABPN1Q86U42 306 aaKnown RBP eCLIP24.17■■□□□ 1.46
SYNE2-219ENST00000555323 SHROOM4Q9ULL8 1493 aa23.99■■□□□ 1.43
SYNE2-219ENST00000555323 EIF4G1Q04637 1599 aaKnown RBP23.5■■□□□ 1.35
SYNE2-219ENST00000555323 CECR2Q9BXF3 1484 aa23.49■■□□□ 1.35
SYNE2-219ENST00000555323 DNAJC5BQ9UF47 199 aa23.43■■□□□ 1.34
SYNE2-219ENST00000555323 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
SYNE2-219ENST00000555323 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
SYNE2-219ENST00000555323 CC2D2AQ9P2K1 1620 aa23.3■■□□□ 1.32
SYNE2-219ENST00000555323 MROH2BQ7Z745 1585 aa23.26■■□□□ 1.31
SYNE2-219ENST00000555323 ATAD2BQ9ULI0 1458 aa23.17■■□□□ 1.3
SYNE2-219ENST00000555323 RSF1Q96T23 1441 aaPredicted RBP23.16■■□□□ 1.3
SYNE2-219ENST00000555323 NCAPD3P42695 1498 aa23.14■■□□□ 1.29
SYNE2-219ENST00000555323 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.29
SYNE2-219ENST00000555323 SMARCA2P51531 1590 aa23.11■■□□□ 1.29
SYNE2-219ENST00000555323 HMGXB3Q12766 1538 aa22.98■■□□□ 1.27
SYNE2-219ENST00000555323 WIZO95785 1651 aa22.97■■□□□ 1.27
SYNE2-219ENST00000555323 BAZ1BQ9UIG0 1483 aaKnown RBP22.94■■□□□ 1.26
SYNE2-219ENST00000555323 SUPT5HO00267 1087 aaKnown RBP22.79■■□□□ 1.24
SYNE2-219ENST00000555323 TOP2AP11388 1531 aaKnown RBP22.78■■□□□ 1.24
SYNE2-219ENST00000555323 CCDC88BA6NC98 1476 aa22.56■■□□□ 1.2
SYNE2-219ENST00000555323 CADPSQ9ULU8 1353 aa22.48■■□□□ 1.19
SYNE2-219ENST00000555323 LAMC3Q9Y6N6 1575 aa22.4■■□□□ 1.18
SYNE2-219ENST00000555323 CFTRP13569 1480 aa22.4■■□□□ 1.18
SYNE2-219ENST00000555323 NESP48681 1621 aa22.39■■□□□ 1.17
SYNE2-219ENST00000555323 PDS5BQ9NTI5 1447 aa22.28■■□□□ 1.16
SYNE2-219ENST00000555323 FANCD2Q9BXW9 1451 aa22.15■■□□□ 1.14
SYNE2-219ENST00000555323 ERCC6Q03468 1493 aa22.15■■□□□ 1.14
SYNE2-219ENST00000555323 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
SYNE2-219ENST00000555323 CEP164Q9UPV0 1460 aa22.08■■□□□ 1.12
SYNE2-219ENST00000555323 KIF21AQ7Z4S6 1674 aa22.05■■□□□ 1.12
SYNE2-219ENST00000555323 MRC2Q9UBG0 1479 aa21.98■■□□□ 1.11
SYNE2-219ENST00000555323 THOC2Q8NI27 1593 aaKnown RBP21.94■■□□□ 1.1
SYNE2-219ENST00000555323 URB2Q14146 1524 aaKnown RBP21.9■■□□□ 1.1
SYNE2-219ENST00000555323 ABCC8Q09428 1581 aa21.9■■□□□ 1.1
SYNE2-219ENST00000555323 WDR62O43379 1518 aa21.9■■□□□ 1.1
SYNE2-219ENST00000555323 CUX2O14529 1486 aa21.84■■□□□ 1.09
SYNE2-219ENST00000555323 TOPBP1Q92547 1522 aa21.84■■□□□ 1.09
SYNE2-219ENST00000555323 DNMBPQ6XZF7 1577 aa21.82■■□□□ 1.08
SYNE2-219ENST00000555323 WRNQ14191 1432 aaPredicted RBP eCLIP21.8■■□□□ 1.08
SYNE2-219ENST00000555323 CUX1P39880 1505 aa21.79■■□□□ 1.08
SYNE2-219ENST00000555323 TOP2BQ02880 1626 aa21.69■■□□□ 1.06
SYNE2-219ENST00000555323 POLA1P09884 1462 aaPredicted RBP21.68■■□□□ 1.06
SYNE2-219ENST00000555323 SYNJ1O43426 1573 aa21.67■■□□□ 1.06
SYNE2-219ENST00000555323 FGD5Q6ZNL6 1462 aa21.66■■□□□ 1.06
SYNE2-219ENST00000555323 BIVM-ERCC5R4GMW8 1640 aa21.66■■□□□ 1.06
SYNE2-219ENST00000555323 IFT140Q96RY7 1462 aa21.64■■□□□ 1.05
SYNE2-219ENST00000555323 SOGA1O94964 1423 aa21.63■■□□□ 1.05
SYNE2-219ENST00000555323 RAD54L2Q9Y4B4 1467 aa21.58■■□□□ 1.04
SYNE2-219ENST00000555323 TARBP1Q13395 1621 aaKnown RBP21.55■■□□□ 1.04
SYNE2-219ENST00000555323 TRIM41Q8WV44 630 aa21.55■■□□□ 1.04
SYNE2-219ENST00000555323 CHIC1Q5VXU3 224 aa21.53■■□□□ 1.04
SYNE2-219ENST00000555323 ABCA10Q8WWZ4 1543 aa21.5■■□□□ 1.03
SYNE2-219ENST00000555323 ZNF608Q9ULD9 1512 aaPredicted RBP21.48■■□□□ 1.03
SYNE2-219ENST00000555323 TDRD9Q8NDG6 1382 aaKnown RBP21.45■■□□□ 1.02
SYNE2-219ENST00000555323 AQRO60306 1485 aaKnown RBP eCLIP21.43■■□□□ 1.02
SYNE2-219ENST00000555323 WDR97A6NE52 1622 aa21.42■■□□□ 1.02
SYNE2-219ENST00000555323 GAPVD1Q14C86 1478 aa21.36■■□□□ 1.01
SYNE2-219ENST00000555323 EIF4G3O43432 1585 aaKnown RBP21.35■■□□□ 1.01
SYNE2-219ENST00000555323 KIF27Q86VH2 1401 aa21.33■■□□□ 1.01
SYNE2-219ENST00000555323 ABCA5Q8WWZ7 1642 aa21.33■■□□□ 1
SYNE2-219ENST00000555323 GRIN2BQ13224 1484 aa21.31■■□□□ 1
SYNE2-219ENST00000555323 IGF1RP08069 1367 aa21.25■□□□□ 0.99
SYNE2-219ENST00000555323 ERICH3Q5RHP9 1530 aa21.24■□□□□ 0.99
SYNE2-219ENST00000555323 RUSC2Q8N2Y8 1516 aa21.23■□□□□ 0.99
SYNE2-219ENST00000555323 MAGI1Q96QZ7 1491 aaPredicted RBP21.22■□□□□ 0.99
SYNE2-219ENST00000555323 SNAPC4Q5SXM2 1469 aa21.2■□□□□ 0.98
SYNE2-219ENST00000555323 PBRM1Q86U86 1689 aa21.18■□□□□ 0.98
SYNE2-219ENST00000555323 EEA1Q15075 1411 aa21.17■□□□□ 0.98
SYNE2-219ENST00000555323 FHAD1B1AJZ9 1412 aa21.14■□□□□ 0.98
SYNE2-219ENST00000555323 SYNJ2O15056 1496 aa21.13■□□□□ 0.97
SYNE2-219ENST00000555323 CHMP7Q8WUX9 453 aaPredicted RBP21.13■□□□□ 0.97
SYNE2-219ENST00000555323 CSRNP3Q8WYN3 585 aa21.12■□□□□ 0.97
SYNE2-219ENST00000555323 CARMIL1Q5VZK9 1371 aa21.1■□□□□ 0.97
SYNE2-219ENST00000555323 ADAMTS12P58397 1594 aa21.08■□□□□ 0.97
SYNE2-219ENST00000555323 FBLN2P98095 1184 aa21.08■□□□□ 0.97
SYNE2-219ENST00000555323 OSCARQ8IYS5 282 aa21.07■□□□□ 0.96
SYNE2-219ENST00000555323 CUL7Q14999 1698 aa21.05■□□□□ 0.96
SYNE2-219ENST00000555323 PRXQ9BXM0 1461 aa21.03■□□□□ 0.96
SYNE2-219ENST00000555323 FAM9AQ8IZU1 332 aaPredicted RBP21.03■□□□□ 0.96
SYNE2-219ENST00000555323 GRIN2AQ12879 1464 aa21.02■□□□□ 0.96
SYNE2-219ENST00000555323 RAPGEF2Q9Y4G8 1499 aa20.99■□□□□ 0.95
SYNE2-219ENST00000555323 CHD1O14646 1710 aa20.98■□□□□ 0.95
SYNE2-219ENST00000555323 NUP160Q12769 1436 aa20.95■□□□□ 0.95
SYNE2-219ENST00000555323 CEP170Q5SW79 1584 aa20.87■□□□□ 0.93
SYNE2-219ENST00000555323 DNAJC5Q9H3Z4 198 aa20.86■□□□□ 0.93
SYNE2-219ENST00000555323 CLASP1Q7Z460 1538 aa20.85■□□□□ 0.93
SYNE2-219ENST00000555323 KIF21BO75037 1637 aa20.85■□□□□ 0.93
SYNE2-219ENST00000555323 KIAA0586Q9BVV6 1533 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms