RNA–Protein interactions for RNA: ENST00000555038.5

ARHGEF40-204, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-204ENST00000555038 NISCHQ9Y2I1 1504 aa45.89■■■■■ 4.94
ARHGEF40-204ENST00000555038 CCDC180Q9P1Z9 1646 aa39.6■■■■□ 3.93
ARHGEF40-204ENST00000555038 ZCCHC6Q5VYS8 1495 aaKnown RBP38.76■■■■□ 3.79
ARHGEF40-204ENST00000555038 DCAF1Q9Y4B6 1507 aa38.01■■■■□ 3.68
ARHGEF40-204ENST00000555038 SHROOM4Q9ULL8 1493 aa38.01■■■■□ 3.67
ARHGEF40-204ENST00000555038 DCAF8L2P0C7V8 631 aa37.5■■■■□ 3.59
ARHGEF40-204ENST00000555038 MYO15BQ96JP2 1530 aa37.21■■■■□ 3.55
ARHGEF40-204ENST00000555038 SUPT5HO00267 1087 aaKnown RBP37.06■■■■□ 3.52
ARHGEF40-204ENST00000555038 NACADO15069 1562 aa36.66■■■■□ 3.46
ARHGEF40-204ENST00000555038 ABCC9O60706 1549 aa36.52■■■■□ 3.44
ARHGEF40-204ENST00000555038 SCRIBQ14160 1630 aa36.49■■■■□ 3.43
ARHGEF40-204ENST00000555038 RB1CC1Q8TDY2 1594 aa36.1■■■■□ 3.37
ARHGEF40-204ENST00000555038 CHIC1Q5VXU3 224 aa36.02■■■■□ 3.36
ARHGEF40-204ENST00000555038 RSF1Q96T23 1441 aaPredicted RBP35.96■■■■□ 3.35
ARHGEF40-204ENST00000555038 CECR2Q9BXF3 1484 aa35.53■■■■□ 3.28
ARHGEF40-204ENST00000555038 MROH2BQ7Z745 1585 aa35.47■■■■□ 3.27
ARHGEF40-204ENST00000555038 BAZ1AQ9NRL2 1556 aaPredicted RBP35.38■■■■□ 3.25
ARHGEF40-204ENST00000555038 UNC13AQ9UPW8 1703 aa35.37■■■■□ 3.25
ARHGEF40-204ENST00000555038 WIZO95785 1651 aa35.21■■■■□ 3.23
ARHGEF40-204ENST00000555038 SMARCA4P51532 1647 aa35.07■■■■□ 3.21
ARHGEF40-204ENST00000555038 BICRAQ9NZM4 1560 aa34.98■■■■□ 3.19
ARHGEF40-204ENST00000555038 TOP2AP11388 1531 aaKnown RBP34.93■■■■□ 3.18
ARHGEF40-204ENST00000555038 TRIM41Q8WV44 630 aa34.83■■■■□ 3.17
ARHGEF40-204ENST00000555038 EIF4G1Q04637 1599 aaKnown RBP34.73■■■■□ 3.15
ARHGEF40-204ENST00000555038 PEG3Q9GZU2 1588 aa34.65■■■■□ 3.14
ARHGEF40-204ENST00000555038 LOC105371045A0A1W2PR82 267 aa34.62■■■■□ 3.13
ARHGEF40-204ENST00000555038 SMARCA2P51531 1590 aa34.61■■■■□ 3.13
ARHGEF40-204ENST00000555038 PABPN1Q86U42 306 aaKnown RBP eCLIP34.61■■■■□ 3.13
ARHGEF40-204ENST00000555038 CCDC88BA6NC98 1476 aa34.56■■■■□ 3.12
ARHGEF40-204ENST00000555038 ATAD2BQ9ULI0 1458 aa34.26■■■■□ 3.08
ARHGEF40-204ENST00000555038 FAM9AQ8IZU1 332 aaPredicted RBP34.15■■■■□ 3.06
ARHGEF40-204ENST00000555038 BAZ1BQ9UIG0 1483 aaKnown RBP34.13■■■■□ 3.05
ARHGEF40-204ENST00000555038 ABCC8Q09428 1581 aa34.1■■■■□ 3.05
ARHGEF40-204ENST00000555038 PCGF6Q9BYE7 350 aa34.08■■■■□ 3.05
ARHGEF40-204ENST00000555038 HRCP23327 699 aa33.94■■■■□ 3.02
ARHGEF40-204ENST00000555038 EEA1Q15075 1411 aa33.92■■■■□ 3.02
ARHGEF40-204ENST00000555038 TRIM26Q12899 539 aaPredicted RBP33.91■■■■□ 3.02
ARHGEF40-204ENST00000555038 HMGXB3Q12766 1538 aa33.87■■■■□ 3.01
ARHGEF40-204ENST00000555038 WRNQ14191 1432 aaPredicted RBP eCLIP33.83■■■■□ 3.01
ARHGEF40-204ENST00000555038 NCAPD3P42695 1498 aa33.83■■■■□ 3.01
ARHGEF40-204ENST00000555038 SOGA1O94964 1423 aa33.68■■■□□ 2.98
ARHGEF40-204ENST00000555038 SYNJ1O43426 1573 aa33.63■■■□□ 2.97
ARHGEF40-204ENST00000555038 EHMT2Q96KQ7 1210 aa33.57■■■□□ 2.96
ARHGEF40-204ENST00000555038 CSRNP3Q8WYN3 585 aa33.56■■■□□ 2.96
ARHGEF40-204ENST00000555038 TNIKQ9UKE5 1360 aa33.53■■■□□ 2.96
ARHGEF40-204ENST00000555038 RUSC2Q8N2Y8 1516 aa33.47■■■□□ 2.95
ARHGEF40-204ENST00000555038 TOP2BQ02880 1626 aa33.46■■■□□ 2.95
ARHGEF40-204ENST00000555038 GOLGA3Q08378 1498 aa33.45■■■□□ 2.95
ARHGEF40-204ENST00000555038 BIVM-ERCC5R4GMW8 1640 aa33.4■■■□□ 2.94
ARHGEF40-204ENST00000555038 CEP162Q5TB80 1403 aa33.39■■■□□ 2.94
ARHGEF40-204ENST00000555038 KIF21BO75037 1637 aa33.39■■■□□ 2.94
ARHGEF40-204ENST00000555038 CEP164Q9UPV0 1460 aa33.36■■■□□ 2.93
ARHGEF40-204ENST00000555038 CFTRP13569 1480 aa33.34■■■□□ 2.93
ARHGEF40-204ENST00000555038 PRDM2Q13029 1718 aa33.23■■■□□ 2.91
ARHGEF40-204ENST00000555038 UBTFP17480 764 aaKnown RBP33.19■■■□□ 2.9
ARHGEF40-204ENST00000555038 ZEB1P37275 1124 aaPredicted RBP33.12■■■□□ 2.89
ARHGEF40-204ENST00000555038 CUX1P39880 1505 aa33.1■■■□□ 2.89
ARHGEF40-204ENST00000555038 CC2D2AQ9P2K1 1620 aa33.09■■■□□ 2.89
ARHGEF40-204ENST00000555038 CADPSQ9ULU8 1353 aa33.01■■■□□ 2.87
ARHGEF40-204ENST00000555038 ERICH3Q5RHP9 1530 aa33■■■□□ 2.87
ARHGEF40-204ENST00000555038 RAPGEF2Q9Y4G8 1499 aa32.96■■■□□ 2.87
ARHGEF40-204ENST00000555038 PRXQ9BXM0 1461 aa32.93■■■□□ 2.86
ARHGEF40-204ENST00000555038 CLIP1P30622 1438 aa32.92■■■□□ 2.86
ARHGEF40-204ENST00000555038 KIF27Q86VH2 1401 aa32.91■■■□□ 2.86
ARHGEF40-204ENST00000555038 PPARGC1BQ86YN6 1023 aaKnown RBP32.88■■■□□ 2.85
ARHGEF40-204ENST00000555038 DNAJC5BQ9UF47 199 aa32.86■■■□□ 2.85
ARHGEF40-204ENST00000555038 VPS8Q8N3P4 1428 aa32.79■■■□□ 2.84
ARHGEF40-204ENST00000555038 FANCD2Q9BXW9 1451 aa32.65■■■□□ 2.82
ARHGEF40-204ENST00000555038 FGD5Q6ZNL6 1462 aa32.6■■■□□ 2.81
ARHGEF40-204ENST00000555038 CUX2O14529 1486 aa32.57■■■□□ 2.8
ARHGEF40-204ENST00000555038 DNMBPQ6XZF7 1577 aa32.55■■■□□ 2.8
ARHGEF40-204ENST00000555038 LAMC3Q9Y6N6 1575 aa32.52■■■□□ 2.8
ARHGEF40-204ENST00000555038 IGF1RP08069 1367 aa32.48■■■□□ 2.79
ARHGEF40-204ENST00000555038 APLP2Q06481 763 aa32.47■■■□□ 2.79
ARHGEF40-204ENST00000555038 ARAP1Q96P48 1450 aa32.47■■■□□ 2.79
ARHGEF40-204ENST00000555038 TTBK1Q5TCY1 1321 aaPredicted RBP32.41■■■□□ 2.78
ARHGEF40-204ENST00000555038 TOPBP1Q92547 1522 aa32.4■■■□□ 2.78
ARHGEF40-204ENST00000555038 CCER1Q8TC90 406 aaPredicted RBP32.38■■■□□ 2.77
ARHGEF40-204ENST00000555038 ABCA10Q8WWZ4 1543 aa32.37■■■□□ 2.77
ARHGEF40-204ENST00000555038 NESP48681 1621 aa32.35■■■□□ 2.77
ARHGEF40-204ENST00000555038 CARMIL1Q5VZK9 1371 aa32.34■■■□□ 2.77
ARHGEF40-204ENST00000555038 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.34■■■□□ 2.77
ARHGEF40-204ENST00000555038 POLA1P09884 1462 aaPredicted RBP32.31■■■□□ 2.76
ARHGEF40-204ENST00000555038 ARHGAP35Q9NRY4 1499 aa32.29■■■□□ 2.76
ARHGEF40-204ENST00000555038 RANGAP1P46060 587 aaPredicted RBP32.27■■■□□ 2.76
ARHGEF40-204ENST00000555038 PDS5BQ9NTI5 1447 aa32.24■■■□□ 2.75
ARHGEF40-204ENST00000555038 CUL7Q14999 1698 aa32.2■■■□□ 2.75
ARHGEF40-204ENST00000555038 RAD54L2Q9Y4B4 1467 aa32.18■■■□□ 2.74
ARHGEF40-204ENST00000555038 URB2Q14146 1524 aaKnown RBP32.17■■■□□ 2.74
ARHGEF40-204ENST00000555038 WDR97A6NE52 1622 aa32.16■■■□□ 2.74
ARHGEF40-204ENST00000555038 MAP3K1Q13233 1512 aa32.11■■■□□ 2.73
ARHGEF40-204ENST00000555038 ABCA5Q8WWZ7 1642 aa32.02■■■□□ 2.72
ARHGEF40-204ENST00000555038 FHAD1B1AJZ9 1412 aa31.99■■■□□ 2.71
ARHGEF40-204ENST00000555038 KIF21AQ7Z4S6 1674 aa31.99■■■□□ 2.71
ARHGEF40-204ENST00000555038 EFCAB5A4FU69 1503 aa31.99■■■□□ 2.71
ARHGEF40-204ENST00000555038 RRBP1Q9P2E9 1410 aaKnown RBP31.98■■■□□ 2.71
ARHGEF40-204ENST00000555038 HNRNPUL2Q1KMD3 747 aaKnown RBP31.96■■■□□ 2.71
ARHGEF40-204ENST00000555038 KANK4Q5T7N3 995 aaPredicted RBP31.95■■■□□ 2.71
ARHGEF40-204ENST00000555038 CTTNBP2Q8WZ74 1663 aa31.95■■■□□ 2.7
ARHGEF40-204ENST00000555038 TIAM1Q13009 1591 aa31.93■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms