RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 NISCHQ9Y2I1 1504 aa24.01■■□□□ 1.43
SYNE2-215ENST00000554997 CCDC180Q9P1Z9 1646 aa21.1■□□□□ 0.97
SYNE2-215ENST00000554997 ABCC9O60706 1549 aa20.41■□□□□ 0.86
SYNE2-215ENST00000554997 DCAF8L2P0C7V8 631 aa20.04■□□□□ 0.8
SYNE2-215ENST00000554997 ZCCHC6Q5VYS8 1495 aaKnown RBP20.04■□□□□ 0.8
SYNE2-215ENST00000554997 DCAF1Q9Y4B6 1507 aa19.89■□□□□ 0.77
SYNE2-215ENST00000554997 MYO15BQ96JP2 1530 aa19.86■□□□□ 0.77
SYNE2-215ENST00000554997 NACADO15069 1562 aa19.83■□□□□ 0.77
SYNE2-215ENST00000554997 RB1CC1Q8TDY2 1594 aa19.75■□□□□ 0.75
SYNE2-215ENST00000554997 SCRIBQ14160 1630 aa19.29■□□□□ 0.68
SYNE2-215ENST00000554997 UNC13AQ9UPW8 1703 aa19.25■□□□□ 0.67
SYNE2-215ENST00000554997 PABPN1Q86U42 306 aaKnown RBP eCLIP19.21■□□□□ 0.67
SYNE2-215ENST00000554997 SHROOM4Q9ULL8 1493 aa19.18■□□□□ 0.66
SYNE2-215ENST00000554997 BICRAQ9NZM4 1560 aa19.14■□□□□ 0.65
SYNE2-215ENST00000554997 AEBP2Q6ZN18 517 aaPredicted RBP18.77■□□□□ 0.6
SYNE2-215ENST00000554997 DNAJC5BQ9UF47 199 aa18.69■□□□□ 0.58
SYNE2-215ENST00000554997 CECR2Q9BXF3 1484 aa18.68■□□□□ 0.58
SYNE2-215ENST00000554997 EIF4G1Q04637 1599 aaKnown RBP18.6■□□□□ 0.57
SYNE2-215ENST00000554997 BAZ1AQ9NRL2 1556 aaPredicted RBP18.57■□□□□ 0.56
SYNE2-215ENST00000554997 SMARCA4P51532 1647 aa18.5■□□□□ 0.55
SYNE2-215ENST00000554997 MROH2BQ7Z745 1585 aa18.5■□□□□ 0.55
SYNE2-215ENST00000554997 RSF1Q96T23 1441 aaPredicted RBP18.46■□□□□ 0.55
SYNE2-215ENST00000554997 CC2D2AQ9P2K1 1620 aa18.44■□□□□ 0.54
SYNE2-215ENST00000554997 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.53
SYNE2-215ENST00000554997 NCAPD3P42695 1498 aa18.36■□□□□ 0.53
SYNE2-215ENST00000554997 SMARCA2P51531 1590 aa18.34■□□□□ 0.53
SYNE2-215ENST00000554997 PEG3Q9GZU2 1588 aa18.34■□□□□ 0.53
SYNE2-215ENST00000554997 SUPT5HO00267 1087 aaKnown RBP18.29■□□□□ 0.52
SYNE2-215ENST00000554997 WIZO95785 1651 aa18.27■□□□□ 0.52
SYNE2-215ENST00000554997 BAZ1BQ9UIG0 1483 aaKnown RBP18.23■□□□□ 0.51
SYNE2-215ENST00000554997 HMGXB3Q12766 1538 aa18.21■□□□□ 0.51
SYNE2-215ENST00000554997 TOP2AP11388 1531 aaKnown RBP18.11■□□□□ 0.49
SYNE2-215ENST00000554997 CHIC1Q5VXU3 224 aa18.08■□□□□ 0.48
SYNE2-215ENST00000554997 CCDC88BA6NC98 1476 aa17.97■□□□□ 0.47
SYNE2-215ENST00000554997 CADPSQ9ULU8 1353 aa17.86■□□□□ 0.45
SYNE2-215ENST00000554997 CFTRP13569 1480 aa17.79■□□□□ 0.44
SYNE2-215ENST00000554997 NESP48681 1621 aa17.76■□□□□ 0.43
SYNE2-215ENST00000554997 LAMC3Q9Y6N6 1575 aa17.74■□□□□ 0.43
SYNE2-215ENST00000554997 PDS5BQ9NTI5 1447 aa17.69■□□□□ 0.42
SYNE2-215ENST00000554997 FANCD2Q9BXW9 1451 aa17.59■□□□□ 0.41
SYNE2-215ENST00000554997 ERCC6Q03468 1493 aa17.56■□□□□ 0.4
SYNE2-215ENST00000554997 CEP164Q9UPV0 1460 aa17.51■□□□□ 0.39
SYNE2-215ENST00000554997 PRDM2Q13029 1718 aa17.48■□□□□ 0.39
SYNE2-215ENST00000554997 KIF21AQ7Z4S6 1674 aa17.47■□□□□ 0.39
SYNE2-215ENST00000554997 MRC2Q9UBG0 1479 aa17.43■□□□□ 0.38
SYNE2-215ENST00000554997 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
SYNE2-215ENST00000554997 THOC2Q8NI27 1593 aaKnown RBP17.4■□□□□ 0.38
SYNE2-215ENST00000554997 URB2Q14146 1524 aaKnown RBP17.38■□□□□ 0.37
SYNE2-215ENST00000554997 WRNQ14191 1432 aaPredicted RBP eCLIP17.38■□□□□ 0.37
SYNE2-215ENST00000554997 CUX2O14529 1486 aa17.36■□□□□ 0.37
SYNE2-215ENST00000554997 WDR62O43379 1518 aa17.33■□□□□ 0.37
SYNE2-215ENST00000554997 TOPBP1Q92547 1522 aa17.33■□□□□ 0.37
SYNE2-215ENST00000554997 DNMBPQ6XZF7 1577 aa17.32■□□□□ 0.36
SYNE2-215ENST00000554997 CUX1P39880 1505 aa17.31■□□□□ 0.36
SYNE2-215ENST00000554997 TRIM41Q8WV44 630 aa17.29■□□□□ 0.36
SYNE2-215ENST00000554997 TOP2BQ02880 1626 aa17.25■□□□□ 0.35
SYNE2-215ENST00000554997 SYNJ1O43426 1573 aa17.24■□□□□ 0.35
SYNE2-215ENST00000554997 SOGA1O94964 1423 aa17.22■□□□□ 0.35
SYNE2-215ENST00000554997 POLA1P09884 1462 aaPredicted RBP17.21■□□□□ 0.35
SYNE2-215ENST00000554997 FGD5Q6ZNL6 1462 aa17.21■□□□□ 0.35
SYNE2-215ENST00000554997 BIVM-ERCC5R4GMW8 1640 aa17.21■□□□□ 0.35
SYNE2-215ENST00000554997 IFT140Q96RY7 1462 aa17.17■□□□□ 0.34
SYNE2-215ENST00000554997 RAD54L2Q9Y4B4 1467 aa17.16■□□□□ 0.34
SYNE2-215ENST00000554997 TARBP1Q13395 1621 aaKnown RBP17.09■□□□□ 0.33
SYNE2-215ENST00000554997 ABCA10Q8WWZ4 1543 aa17.08■□□□□ 0.32
SYNE2-215ENST00000554997 TDRD9Q8NDG6 1382 aaKnown RBP17.08■□□□□ 0.32
SYNE2-215ENST00000554997 ZNF608Q9ULD9 1512 aaPredicted RBP17.05■□□□□ 0.32
SYNE2-215ENST00000554997 AQRO60306 1485 aaKnown RBP eCLIP17.03■□□□□ 0.32
SYNE2-215ENST00000554997 KIF27Q86VH2 1401 aa17.01■□□□□ 0.31
SYNE2-215ENST00000554997 GAPVD1Q14C86 1478 aa16.99■□□□□ 0.31
SYNE2-215ENST00000554997 WDR97A6NE52 1622 aa16.97■□□□□ 0.31
SYNE2-215ENST00000554997 IGF1RP08069 1367 aa16.94■□□□□ 0.3
SYNE2-215ENST00000554997 RUSC2Q8N2Y8 1516 aa16.94■□□□□ 0.3
SYNE2-215ENST00000554997 GRIN2BQ13224 1484 aa16.93■□□□□ 0.3
SYNE2-215ENST00000554997 CSRNP3Q8WYN3 585 aa16.92■□□□□ 0.3
SYNE2-215ENST00000554997 EIF4G3O43432 1585 aaKnown RBP16.91■□□□□ 0.3
SYNE2-215ENST00000554997 ABCA5Q8WWZ7 1642 aa16.91■□□□□ 0.3
SYNE2-215ENST00000554997 EEA1Q15075 1411 aa16.9■□□□□ 0.3
SYNE2-215ENST00000554997 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
SYNE2-215ENST00000554997 ERICH3Q5RHP9 1530 aa16.87■□□□□ 0.29
SYNE2-215ENST00000554997 DNAJC5Q9H3Z4 198 aa16.85■□□□□ 0.29
SYNE2-215ENST00000554997 CARMIL1Q5VZK9 1371 aa16.83■□□□□ 0.28
SYNE2-215ENST00000554997 CHMP7Q8WUX9 453 aaPredicted RBP16.83■□□□□ 0.28
SYNE2-215ENST00000554997 MAGI1Q96QZ7 1491 aaPredicted RBP16.83■□□□□ 0.28
SYNE2-215ENST00000554997 SNAPC4Q5SXM2 1469 aa16.82■□□□□ 0.28
SYNE2-215ENST00000554997 FHAD1B1AJZ9 1412 aa16.81■□□□□ 0.28
SYNE2-215ENST00000554997 FBLN2P98095 1184 aa16.8■□□□□ 0.28
SYNE2-215ENST00000554997 PBRM1Q86U86 1689 aa16.78■□□□□ 0.28
SYNE2-215ENST00000554997 SYNJ2O15056 1496 aa16.78■□□□□ 0.28
SYNE2-215ENST00000554997 PRXQ9BXM0 1461 aa16.75■□□□□ 0.27
SYNE2-215ENST00000554997 OSCARQ8IYS5 282 aa16.73■□□□□ 0.27
SYNE2-215ENST00000554997 RAPGEF2Q9Y4G8 1499 aa16.73■□□□□ 0.27
SYNE2-215ENST00000554997 CUL7Q14999 1698 aa16.72■□□□□ 0.27
SYNE2-215ENST00000554997 ADAMTS12P58397 1594 aa16.72■□□□□ 0.27
SYNE2-215ENST00000554997 GRIN2AQ12879 1464 aa16.69■□□□□ 0.26
SYNE2-215ENST00000554997 CHD1O14646 1710 aa16.65■□□□□ 0.26
SYNE2-215ENST00000554997 NUP160Q12769 1436 aa16.62■□□□□ 0.25
SYNE2-215ENST00000554997 UBTFP17480 764 aaKnown RBP16.62■□□□□ 0.25
SYNE2-215ENST00000554997 EHMT2Q96KQ7 1210 aa16.62■□□□□ 0.25
SYNE2-215ENST00000554997 KIF21BO75037 1637 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms