RNA–Protein interactions for RNA: ENST00000554628.5

PTPN21-206, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

TSL 1 (best)

Gene PTPN21, Length 1,571 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-206ENST00000554628 NISCHQ9Y2I1 1504 aa43.69■■■■■ 4.58
PTPN21-206ENST00000554628 CCDC180Q9P1Z9 1646 aa38.75■■■■□ 3.79
PTPN21-206ENST00000554628 ABCC9O60706 1549 aa37.68■■■■□ 3.62
PTPN21-206ENST00000554628 ZCCHC6Q5VYS8 1495 aaKnown RBP36.44■■■■□ 3.42
PTPN21-206ENST00000554628 DCAF8L2P0C7V8 631 aa36.41■■■■□ 3.42
PTPN21-206ENST00000554628 NACADO15069 1562 aa36.34■■■■□ 3.41
PTPN21-206ENST00000554628 RB1CC1Q8TDY2 1594 aa36.34■■■■□ 3.41
PTPN21-206ENST00000554628 MYO15BQ96JP2 1530 aa36.19■■■■□ 3.38
PTPN21-206ENST00000554628 DCAF1Q9Y4B6 1507 aa36.14■■■■□ 3.38
PTPN21-206ENST00000554628 UNC13AQ9UPW8 1703 aa35.61■■■■□ 3.29
PTPN21-206ENST00000554628 SCRIBQ14160 1630 aa35.39■■■■□ 3.26
PTPN21-206ENST00000554628 BICRAQ9NZM4 1560 aa35.25■■■■□ 3.23
PTPN21-206ENST00000554628 PABPN1Q86U42 306 aaKnown RBP eCLIP35.25■■■■□ 3.23
PTPN21-206ENST00000554628 SHROOM4Q9ULL8 1493 aa34.83■■■■□ 3.17
PTPN21-206ENST00000554628 DNAJC5BQ9UF47 199 aa34.36■■■■□ 3.09
PTPN21-206ENST00000554628 EIF4G1Q04637 1599 aaKnown RBP34.29■■■■□ 3.08
PTPN21-206ENST00000554628 CC2D2AQ9P2K1 1620 aa34.11■■■■□ 3.05
PTPN21-206ENST00000554628 CECR2Q9BXF3 1484 aa34.03■■■■□ 3.04
PTPN21-206ENST00000554628 SMARCA4P51532 1647 aa33.87■■■■□ 3.01
PTPN21-206ENST00000554628 BAZ1AQ9NRL2 1556 aaPredicted RBP33.85■■■■□ 3.01
PTPN21-206ENST00000554628 MROH2BQ7Z745 1585 aa33.69■■■□□ 2.98
PTPN21-206ENST00000554628 ATAD2BQ9ULI0 1458 aa33.6■■■□□ 2.97
PTPN21-206ENST00000554628 SMARCA2P51531 1590 aa33.56■■■□□ 2.96
PTPN21-206ENST00000554628 NCAPD3P42695 1498 aa33.53■■■□□ 2.96
PTPN21-206ENST00000554628 PEG3Q9GZU2 1588 aa33.51■■■□□ 2.96
PTPN21-206ENST00000554628 HMGXB3Q12766 1538 aa33.39■■■□□ 2.94
PTPN21-206ENST00000554628 RSF1Q96T23 1441 aaPredicted RBP33.38■■■□□ 2.93
PTPN21-206ENST00000554628 WIZO95785 1651 aa33.37■■■□□ 2.93
PTPN21-206ENST00000554628 BAZ1BQ9UIG0 1483 aaKnown RBP33.33■■■□□ 2.93
PTPN21-206ENST00000554628 TOP2AP11388 1531 aaKnown RBP32.99■■■□□ 2.87
PTPN21-206ENST00000554628 SUPT5HO00267 1087 aaKnown RBP32.74■■■□□ 2.83
PTPN21-206ENST00000554628 NESP48681 1621 aa32.69■■■□□ 2.82
PTPN21-206ENST00000554628 LAMC3Q9Y6N6 1575 aa32.62■■■□□ 2.81
PTPN21-206ENST00000554628 CCDC88BA6NC98 1476 aa32.6■■■□□ 2.81
PTPN21-206ENST00000554628 CADPSQ9ULU8 1353 aa32.56■■■□□ 2.8
PTPN21-206ENST00000554628 CFTRP13569 1480 aa32.43■■■□□ 2.78
PTPN21-206ENST00000554628 ERCC6Q03468 1493 aa32.43■■■□□ 2.78
PTPN21-206ENST00000554628 PDS5BQ9NTI5 1447 aa32.37■■■□□ 2.77
PTPN21-206ENST00000554628 KIF21AQ7Z4S6 1674 aa32.34■■■□□ 2.77
PTPN21-206ENST00000554628 PRDM2Q13029 1718 aa32.27■■■□□ 2.76
PTPN21-206ENST00000554628 FANCD2Q9BXW9 1451 aa32.2■■■□□ 2.75
PTPN21-206ENST00000554628 THOC2Q8NI27 1593 aaKnown RBP32.14■■■□□ 2.74
PTPN21-206ENST00000554628 CEP164Q9UPV0 1460 aa32.14■■■□□ 2.74
PTPN21-206ENST00000554628 MRC2Q9UBG0 1479 aa32.03■■■□□ 2.72
PTPN21-206ENST00000554628 CUX2O14529 1486 aa31.99■■■□□ 2.71
PTPN21-206ENST00000554628 WDR62O43379 1518 aa31.93■■■□□ 2.7
PTPN21-206ENST00000554628 URB2Q14146 1524 aaKnown RBP31.88■■■□□ 2.69
PTPN21-206ENST00000554628 TOPBP1Q92547 1522 aa31.73■■■□□ 2.67
PTPN21-206ENST00000554628 ABCC8Q09428 1581 aa31.7■■■□□ 2.67
PTPN21-206ENST00000554628 DNMBPQ6XZF7 1577 aa31.7■■■□□ 2.67
PTPN21-206ENST00000554628 CUX1P39880 1505 aa31.59■■■□□ 2.65
PTPN21-206ENST00000554628 POLA1P09884 1462 aaPredicted RBP31.48■■■□□ 2.63
PTPN21-206ENST00000554628 WRNQ14191 1432 aaPredicted RBP eCLIP31.46■■■□□ 2.63
PTPN21-206ENST00000554628 FGD5Q6ZNL6 1462 aa31.44■■■□□ 2.62
PTPN21-206ENST00000554628 IFT140Q96RY7 1462 aa31.44■■■□□ 2.62
PTPN21-206ENST00000554628 SYNJ1O43426 1573 aa31.4■■■□□ 2.62
PTPN21-206ENST00000554628 BIVM-ERCC5R4GMW8 1640 aa31.39■■■□□ 2.62
PTPN21-206ENST00000554628 TOP2BQ02880 1626 aa31.38■■■□□ 2.61
PTPN21-206ENST00000554628 TARBP1Q13395 1621 aaKnown RBP31.38■■■□□ 2.61
PTPN21-206ENST00000554628 RAD54L2Q9Y4B4 1467 aa31.34■■■□□ 2.61
PTPN21-206ENST00000554628 SOGA1O94964 1423 aa31.34■■■□□ 2.61
PTPN21-206ENST00000554628 ZNF608Q9ULD9 1512 aaPredicted RBP31.31■■■□□ 2.6
PTPN21-206ENST00000554628 EIF4G3O43432 1585 aaKnown RBP31.21■■■□□ 2.59
PTPN21-206ENST00000554628 WDR97A6NE52 1622 aa31.2■■■□□ 2.59
PTPN21-206ENST00000554628 AQRO60306 1485 aaKnown RBP eCLIP31.16■■■□□ 2.58
PTPN21-206ENST00000554628 TDRD9Q8NDG6 1382 aaKnown RBP31.14■■■□□ 2.58
PTPN21-206ENST00000554628 ABCA10Q8WWZ4 1543 aa31.13■■■□□ 2.57
PTPN21-206ENST00000554628 ABCA5Q8WWZ7 1642 aa31.02■■■□□ 2.56
PTPN21-206ENST00000554628 GAPVD1Q14C86 1478 aa30.99■■■□□ 2.55
PTPN21-206ENST00000554628 PBRM1Q86U86 1689 aa30.96■■■□□ 2.55
PTPN21-206ENST00000554628 GRIN2BQ13224 1484 aa30.94■■■□□ 2.54
PTPN21-206ENST00000554628 TRIM41Q8WV44 630 aa30.89■■■□□ 2.54
PTPN21-206ENST00000554628 SNAPC4Q5SXM2 1469 aa30.87■■■□□ 2.53
PTPN21-206ENST00000554628 MAGI1Q96QZ7 1491 aaPredicted RBP30.82■■■□□ 2.53
PTPN21-206ENST00000554628 CHD1O14646 1710 aa30.8■■■□□ 2.52
PTPN21-206ENST00000554628 KIF27Q86VH2 1401 aa30.77■■■□□ 2.52
PTPN21-206ENST00000554628 ERICH3Q5RHP9 1530 aa30.77■■■□□ 2.52
PTPN21-206ENST00000554628 FBLN2P98095 1184 aa30.74■■■□□ 2.51
PTPN21-206ENST00000554628 DNAJC5Q9H3Z4 198 aa30.72■■■□□ 2.51
PTPN21-206ENST00000554628 OSCARQ8IYS5 282 aa30.71■■■□□ 2.51
PTPN21-206ENST00000554628 SYNJ2O15056 1496 aa30.71■■■□□ 2.51
PTPN21-206ENST00000554628 ADAMTS12P58397 1594 aa30.69■■■□□ 2.5
PTPN21-206ENST00000554628 CHIC1Q5VXU3 224 aa30.69■■■□□ 2.5
PTPN21-206ENST00000554628 CHMP7Q8WUX9 453 aaPredicted RBP30.67■■■□□ 2.5
PTPN21-206ENST00000554628 IGF1RP08069 1367 aa30.63■■■□□ 2.49
PTPN21-206ENST00000554628 RUSC2Q8N2Y8 1516 aa30.63■■■□□ 2.49
PTPN21-206ENST00000554628 FHAD1B1AJZ9 1412 aa30.62■■■□□ 2.49
PTPN21-206ENST00000554628 GRIN2AQ12879 1464 aa30.55■■■□□ 2.48
PTPN21-206ENST00000554628 CUL7Q14999 1698 aa30.55■■■□□ 2.48
PTPN21-206ENST00000554628 CARMIL1Q5VZK9 1371 aa30.45■■■□□ 2.46
PTPN21-206ENST00000554628 CLASP1Q7Z460 1538 aa30.42■■■□□ 2.46
PTPN21-206ENST00000554628 CEP170Q5SW79 1584 aa30.41■■■□□ 2.46
PTPN21-206ENST00000554628 NUP160Q12769 1436 aa30.4■■■□□ 2.46
PTPN21-206ENST00000554628 EEA1Q15075 1411 aa30.33■■■□□ 2.45
PTPN21-206ENST00000554628 RAPGEF2Q9Y4G8 1499 aa30.3■■■□□ 2.44
PTPN21-206ENST00000554628 CSRNP3Q8WYN3 585 aa30.28■■■□□ 2.44
PTPN21-206ENST00000554628 FAM9AQ8IZU1 332 aaPredicted RBP30.27■■■□□ 2.44
PTPN21-206ENST00000554628 PRXQ9BXM0 1461 aa30.26■■■□□ 2.43
PTPN21-206ENST00000554628 ARHGEF11O15085 1522 aa30.24■■■□□ 2.43
PTPN21-206ENST00000554628 RIMBP3CA6NJZ7 1639 aa30.23■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms