RNA–Protein interactions for RNA: ENST00000553656.5

TUBB3-202, Transcript of tubulin beta 3 class III, humanhuman

TSL 4

Gene TUBB3, Length 550 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB3-202ENST00000553656 NISCHQ9Y2I1 1504 aa33.07■■■□□ 2.88
TUBB3-202ENST00000553656 CCDC180Q9P1Z9 1646 aa29.32■■■□□ 2.28
TUBB3-202ENST00000553656 ABCC9O60706 1549 aa28.47■■■□□ 2.15
TUBB3-202ENST00000553656 ZCCHC6Q5VYS8 1495 aaKnown RBP27.6■■■□□ 2.01
TUBB3-202ENST00000553656 DCAF8L2P0C7V8 631 aa27.6■■■□□ 2.01
TUBB3-202ENST00000553656 NACADO15069 1562 aa27.52■■■□□ 2
TUBB3-202ENST00000553656 RB1CC1Q8TDY2 1594 aa27.51■■□□□ 1.99
TUBB3-202ENST00000553656 MYO15BQ96JP2 1530 aa27.4■■□□□ 1.98
TUBB3-202ENST00000553656 DCAF1Q9Y4B6 1507 aa27.37■■□□□ 1.97
TUBB3-202ENST00000553656 UNC13AQ9UPW8 1703 aa26.81■■□□□ 1.88
TUBB3-202ENST00000553656 SCRIBQ14160 1630 aa26.78■■□□□ 1.88
TUBB3-202ENST00000553656 PABPN1Q86U42 306 aaKnown RBP eCLIP26.63■■□□□ 1.85
TUBB3-202ENST00000553656 BICRAQ9NZM4 1560 aa26.58■■□□□ 1.85
TUBB3-202ENST00000553656 SHROOM4Q9ULL8 1493 aa26.4■■□□□ 1.82
TUBB3-202ENST00000553656 EIF4G1Q04637 1599 aaKnown RBP25.91■■□□□ 1.74
TUBB3-202ENST00000553656 DNAJC5BQ9UF47 199 aa25.81■■□□□ 1.72
TUBB3-202ENST00000553656 CC2D2AQ9P2K1 1620 aa25.74■■□□□ 1.71
TUBB3-202ENST00000553656 CECR2Q9BXF3 1484 aa25.71■■□□□ 1.71
TUBB3-202ENST00000553656 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
TUBB3-202ENST00000553656 SMARCA4P51532 1647 aa25.62■■□□□ 1.69
TUBB3-202ENST00000553656 MROH2BQ7Z745 1585 aa25.48■■□□□ 1.67
TUBB3-202ENST00000553656 SMARCA2P51531 1590 aa25.44■■□□□ 1.66
TUBB3-202ENST00000553656 ATAD2BQ9ULI0 1458 aa25.4■■□□□ 1.66
TUBB3-202ENST00000553656 NCAPD3P42695 1498 aa25.35■■□□□ 1.65
TUBB3-202ENST00000553656 PEG3Q9GZU2 1588 aa25.34■■□□□ 1.65
TUBB3-202ENST00000553656 HMGXB3Q12766 1538 aa25.27■■□□□ 1.64
TUBB3-202ENST00000553656 RSF1Q96T23 1441 aaPredicted RBP25.27■■□□□ 1.64
TUBB3-202ENST00000553656 BAZ1BQ9UIG0 1483 aaKnown RBP25.26■■□□□ 1.63
TUBB3-202ENST00000553656 WIZO95785 1651 aa25.22■■□□□ 1.63
TUBB3-202ENST00000553656 TOP2AP11388 1531 aaKnown RBP25■■□□□ 1.59
TUBB3-202ENST00000553656 SUPT5HO00267 1087 aaKnown RBP24.87■■□□□ 1.57
TUBB3-202ENST00000553656 LAMC3Q9Y6N6 1575 aa24.68■■□□□ 1.54
TUBB3-202ENST00000553656 CCDC88BA6NC98 1476 aa24.67■■□□□ 1.54
TUBB3-202ENST00000553656 NESP48681 1621 aa24.67■■□□□ 1.54
TUBB3-202ENST00000553656 CADPSQ9ULU8 1353 aa24.65■■□□□ 1.54
TUBB3-202ENST00000553656 ERCC6Q03468 1493 aa24.58■■□□□ 1.52
TUBB3-202ENST00000553656 CFTRP13569 1480 aa24.54■■□□□ 1.52
TUBB3-202ENST00000553656 PDS5BQ9NTI5 1447 aa24.53■■□□□ 1.52
TUBB3-202ENST00000553656 KIF21AQ7Z4S6 1674 aa24.4■■□□□ 1.5
TUBB3-202ENST00000553656 PRDM2Q13029 1718 aa24.39■■□□□ 1.5
TUBB3-202ENST00000553656 FANCD2Q9BXW9 1451 aa24.38■■□□□ 1.49
TUBB3-202ENST00000553656 CEP164Q9UPV0 1460 aa24.35■■□□□ 1.49
TUBB3-202ENST00000553656 MRC2Q9UBG0 1479 aa24.26■■□□□ 1.47
TUBB3-202ENST00000553656 THOC2Q8NI27 1593 aaKnown RBP24.25■■□□□ 1.47
TUBB3-202ENST00000553656 CUX2O14529 1486 aa24.19■■□□□ 1.46
TUBB3-202ENST00000553656 WDR62O43379 1518 aa24.15■■□□□ 1.46
TUBB3-202ENST00000553656 URB2Q14146 1524 aaKnown RBP24.09■■□□□ 1.45
TUBB3-202ENST00000553656 ABCC8Q09428 1581 aa24.06■■□□□ 1.44
TUBB3-202ENST00000553656 DNMBPQ6XZF7 1577 aa24.01■■□□□ 1.43
TUBB3-202ENST00000553656 TOPBP1Q92547 1522 aa24■■□□□ 1.43
TUBB3-202ENST00000553656 CUX1P39880 1505 aa23.89■■□□□ 1.42
TUBB3-202ENST00000553656 WRNQ14191 1432 aaPredicted RBP eCLIP23.87■■□□□ 1.41
TUBB3-202ENST00000553656 IFT140Q96RY7 1462 aa23.81■■□□□ 1.4
TUBB3-202ENST00000553656 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
TUBB3-202ENST00000553656 FGD5Q6ZNL6 1462 aa23.81■■□□□ 1.4
TUBB3-202ENST00000553656 TOP2BQ02880 1626 aa23.77■■□□□ 1.4
TUBB3-202ENST00000553656 SYNJ1O43426 1573 aa23.76■■□□□ 1.39
TUBB3-202ENST00000553656 BIVM-ERCC5R4GMW8 1640 aa23.76■■□□□ 1.39
TUBB3-202ENST00000553656 SOGA1O94964 1423 aa23.74■■□□□ 1.39
TUBB3-202ENST00000553656 TARBP1Q13395 1621 aaKnown RBP23.7■■□□□ 1.38
TUBB3-202ENST00000553656 RAD54L2Q9Y4B4 1467 aa23.69■■□□□ 1.38
TUBB3-202ENST00000553656 ZNF608Q9ULD9 1512 aaPredicted RBP23.64■■□□□ 1.38
TUBB3-202ENST00000553656 EIF4G3O43432 1585 aaKnown RBP23.6■■□□□ 1.37
TUBB3-202ENST00000553656 WDR97A6NE52 1622 aa23.58■■□□□ 1.36
TUBB3-202ENST00000553656 ABCA10Q8WWZ4 1543 aa23.57■■□□□ 1.36
TUBB3-202ENST00000553656 TDRD9Q8NDG6 1382 aaKnown RBP23.56■■□□□ 1.36
TUBB3-202ENST00000553656 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.36
TUBB3-202ENST00000553656 TRIM41Q8WV44 630 aa23.49■■□□□ 1.35
TUBB3-202ENST00000553656 GAPVD1Q14C86 1478 aa23.47■■□□□ 1.35
TUBB3-202ENST00000553656 ABCA5Q8WWZ7 1642 aa23.45■■□□□ 1.34
TUBB3-202ENST00000553656 GRIN2BQ13224 1484 aa23.44■■□□□ 1.34
TUBB3-202ENST00000553656 PBRM1Q86U86 1689 aa23.4■■□□□ 1.34
TUBB3-202ENST00000553656 SNAPC4Q5SXM2 1469 aa23.37■■□□□ 1.33
TUBB3-202ENST00000553656 KIF27Q86VH2 1401 aa23.37■■□□□ 1.33
TUBB3-202ENST00000553656 MAGI1Q96QZ7 1491 aaPredicted RBP23.36■■□□□ 1.33
TUBB3-202ENST00000553656 ERICH3Q5RHP9 1530 aa23.31■■□□□ 1.32
TUBB3-202ENST00000553656 FBLN2P98095 1184 aa23.29■■□□□ 1.32
TUBB3-202ENST00000553656 CHIC1Q5VXU3 224 aa23.29■■□□□ 1.32
TUBB3-202ENST00000553656 SYNJ2O15056 1496 aa23.25■■□□□ 1.31
TUBB3-202ENST00000553656 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
TUBB3-202ENST00000553656 CHD1O14646 1710 aa23.25■■□□□ 1.31
TUBB3-202ENST00000553656 ADAMTS12P58397 1594 aa23.23■■□□□ 1.31
TUBB3-202ENST00000553656 OSCARQ8IYS5 282 aa23.23■■□□□ 1.31
TUBB3-202ENST00000553656 FHAD1B1AJZ9 1412 aa23.21■■□□□ 1.31
TUBB3-202ENST00000553656 IGF1RP08069 1367 aa23.18■■□□□ 1.3
TUBB3-202ENST00000553656 CUL7Q14999 1698 aa23.16■■□□□ 1.3
TUBB3-202ENST00000553656 RUSC2Q8N2Y8 1516 aa23.15■■□□□ 1.3
TUBB3-202ENST00000553656 GRIN2AQ12879 1464 aa23.13■■□□□ 1.29
TUBB3-202ENST00000553656 DNAJC5Q9H3Z4 198 aa23.13■■□□□ 1.29
TUBB3-202ENST00000553656 CARMIL1Q5VZK9 1371 aa23.09■■□□□ 1.29
TUBB3-202ENST00000553656 EEA1Q15075 1411 aa23.08■■□□□ 1.29
TUBB3-202ENST00000553656 NUP160Q12769 1436 aa22.99■■□□□ 1.27
TUBB3-202ENST00000553656 FAM9AQ8IZU1 332 aaPredicted RBP22.99■■□□□ 1.27
TUBB3-202ENST00000553656 CSRNP3Q8WYN3 585 aa22.99■■□□□ 1.27
TUBB3-202ENST00000553656 RAPGEF2Q9Y4G8 1499 aa22.98■■□□□ 1.27
TUBB3-202ENST00000553656 CLASP1Q7Z460 1538 aa22.98■■□□□ 1.27
TUBB3-202ENST00000553656 CEP170Q5SW79 1584 aa22.98■■□□□ 1.27
TUBB3-202ENST00000553656 PRXQ9BXM0 1461 aa22.92■■□□□ 1.26
TUBB3-202ENST00000553656 KIAA0586Q9BVV6 1533 aa22.85■■□□□ 1.25
TUBB3-202ENST00000553656 ARHGEF11O15085 1522 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms