RNA–Protein interactions for RNA: ENST00000553405.1

MTHFD1-204, Transcript of methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, humanhuman

TSL 2

Gene MTHFD1, Length 833 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MTHFD1-204ENST00000553405 NISCHQ9Y2I1 1504 aa35.76■■■■□ 3.31
MTHFD1-204ENST00000553405 CCDC180Q9P1Z9 1646 aa31.62■■■□□ 2.65
MTHFD1-204ENST00000553405 ABCC9O60706 1549 aa30.51■■■□□ 2.47
MTHFD1-204ENST00000553405 ZCCHC6Q5VYS8 1495 aaKnown RBP29.9■■■□□ 2.38
MTHFD1-204ENST00000553405 DCAF1Q9Y4B6 1507 aa29.64■■■□□ 2.34
MTHFD1-204ENST00000553405 MYO15BQ96JP2 1530 aa29.63■■■□□ 2.33
MTHFD1-204ENST00000553405 NACADO15069 1562 aa29.61■■■□□ 2.33
MTHFD1-204ENST00000553405 RB1CC1Q8TDY2 1594 aa29.52■■■□□ 2.32
MTHFD1-204ENST00000553405 DCAF8L2P0C7V8 631 aa29.47■■■□□ 2.31
MTHFD1-204ENST00000553405 UNC13AQ9UPW8 1703 aa28.94■■■□□ 2.22
MTHFD1-204ENST00000553405 SCRIBQ14160 1630 aa28.83■■■□□ 2.21
MTHFD1-204ENST00000553405 BICRAQ9NZM4 1560 aa28.75■■■□□ 2.19
MTHFD1-204ENST00000553405 PABPN1Q86U42 306 aaKnown RBP eCLIP28.55■■■□□ 2.16
MTHFD1-204ENST00000553405 SHROOM4Q9ULL8 1493 aa28.4■■■□□ 2.14
MTHFD1-204ENST00000553405 EIF4G1Q04637 1599 aaKnown RBP27.88■■■□□ 2.05
MTHFD1-204ENST00000553405 CECR2Q9BXF3 1484 aa27.83■■■□□ 2.05
MTHFD1-204ENST00000553405 DNAJC5BQ9UF47 199 aa27.76■■■□□ 2.03
MTHFD1-204ENST00000553405 SMARCA4P51532 1647 aa27.66■■■□□ 2.02
MTHFD1-204ENST00000553405 CC2D2AQ9P2K1 1620 aa27.66■■■□□ 2.02
MTHFD1-204ENST00000553405 BAZ1AQ9NRL2 1556 aaPredicted RBP27.65■■■□□ 2.02
MTHFD1-204ENST00000553405 MROH2BQ7Z745 1585 aa27.57■■■□□ 2
MTHFD1-204ENST00000553405 PEG3Q9GZU2 1588 aa27.44■■□□□ 1.98
MTHFD1-204ENST00000553405 ATAD2BQ9ULI0 1458 aa27.42■■□□□ 1.98
MTHFD1-204ENST00000553405 RSF1Q96T23 1441 aaPredicted RBP27.39■■□□□ 1.97
MTHFD1-204ENST00000553405 NCAPD3P42695 1498 aa27.36■■□□□ 1.97
MTHFD1-204ENST00000553405 SMARCA2P51531 1590 aa27.35■■□□□ 1.97
MTHFD1-204ENST00000553405 WIZO95785 1651 aa27.27■■□□□ 1.96
MTHFD1-204ENST00000553405 HMGXB3Q12766 1538 aa27.25■■□□□ 1.95
MTHFD1-204ENST00000553405 BAZ1BQ9UIG0 1483 aaKnown RBP27.14■■□□□ 1.94
MTHFD1-204ENST00000553405 TOP2AP11388 1531 aaKnown RBP27■■□□□ 1.91
MTHFD1-204ENST00000553405 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
MTHFD1-204ENST00000553405 CCDC88BA6NC98 1476 aa26.69■■□□□ 1.86
MTHFD1-204ENST00000553405 NESP48681 1621 aa26.57■■□□□ 1.84
MTHFD1-204ENST00000553405 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
MTHFD1-204ENST00000553405 LAMC3Q9Y6N6 1575 aa26.53■■□□□ 1.84
MTHFD1-204ENST00000553405 CFTRP13569 1480 aa26.49■■□□□ 1.83
MTHFD1-204ENST00000553405 PRDM2Q13029 1718 aa26.31■■□□□ 1.8
MTHFD1-204ENST00000553405 PDS5BQ9NTI5 1447 aa26.29■■□□□ 1.8
MTHFD1-204ENST00000553405 KIF21AQ7Z4S6 1674 aa26.25■■□□□ 1.79
MTHFD1-204ENST00000553405 FANCD2Q9BXW9 1451 aa26.22■■□□□ 1.79
MTHFD1-204ENST00000553405 ERCC6Q03468 1493 aa26.18■■□□□ 1.78
MTHFD1-204ENST00000553405 THOC2Q8NI27 1593 aaKnown RBP26.12■■□□□ 1.77
MTHFD1-204ENST00000553405 CEP164Q9UPV0 1460 aa26.12■■□□□ 1.77
MTHFD1-204ENST00000553405 MRC2Q9UBG0 1479 aa26.04■■□□□ 1.76
MTHFD1-204ENST00000553405 WDR62O43379 1518 aa25.99■■□□□ 1.75
MTHFD1-204ENST00000553405 URB2Q14146 1524 aaKnown RBP25.99■■□□□ 1.75
MTHFD1-204ENST00000553405 CUX2O14529 1486 aa25.87■■□□□ 1.73
MTHFD1-204ENST00000553405 TOPBP1Q92547 1522 aa25.87■■□□□ 1.73
MTHFD1-204ENST00000553405 DNMBPQ6XZF7 1577 aa25.86■■□□□ 1.73
MTHFD1-204ENST00000553405 CUX1P39880 1505 aa25.84■■□□□ 1.73
MTHFD1-204ENST00000553405 ABCC8Q09428 1581 aa25.82■■□□□ 1.72
MTHFD1-204ENST00000553405 WRNQ14191 1432 aaPredicted RBP eCLIP25.75■■□□□ 1.71
MTHFD1-204ENST00000553405 SYNJ1O43426 1573 aa25.73■■□□□ 1.71
MTHFD1-204ENST00000553405 BIVM-ERCC5R4GMW8 1640 aa25.71■■□□□ 1.71
MTHFD1-204ENST00000553405 TOP2BQ02880 1626 aa25.7■■□□□ 1.71
MTHFD1-204ENST00000553405 POLA1P09884 1462 aaPredicted RBP25.69■■□□□ 1.7
MTHFD1-204ENST00000553405 FGD5Q6ZNL6 1462 aa25.66■■□□□ 1.7
MTHFD1-204ENST00000553405 TARBP1Q13395 1621 aaKnown RBP25.6■■□□□ 1.69
MTHFD1-204ENST00000553405 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
MTHFD1-204ENST00000553405 RAD54L2Q9Y4B4 1467 aa25.55■■□□□ 1.68
MTHFD1-204ENST00000553405 SOGA1O94964 1423 aa25.52■■□□□ 1.68
MTHFD1-204ENST00000553405 WDR97A6NE52 1622 aa25.49■■□□□ 1.67
MTHFD1-204ENST00000553405 ZNF608Q9ULD9 1512 aaPredicted RBP25.48■■□□□ 1.67
MTHFD1-204ENST00000553405 ABCA10Q8WWZ4 1543 aa25.45■■□□□ 1.66
MTHFD1-204ENST00000553405 EIF4G3O43432 1585 aaKnown RBP25.39■■□□□ 1.65
MTHFD1-204ENST00000553405 AQRO60306 1485 aaKnown RBP eCLIP25.35■■□□□ 1.656e-12■■■■□ 19.7
MTHFD1-204ENST00000553405 ABCA5Q8WWZ7 1642 aa25.34■■□□□ 1.65
MTHFD1-204ENST00000553405 TDRD9Q8NDG6 1382 aaKnown RBP25.34■■□□□ 1.65
MTHFD1-204ENST00000553405 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
MTHFD1-204ENST00000553405 TRIM41Q8WV44 630 aa25.3■■□□□ 1.64
MTHFD1-204ENST00000553405 GAPVD1Q14C86 1478 aa25.25■■□□□ 1.63
MTHFD1-204ENST00000553405 PBRM1Q86U86 1689 aa25.2■■□□□ 1.62
MTHFD1-204ENST00000553405 GRIN2BQ13224 1484 aa25.19■■□□□ 1.62
MTHFD1-204ENST00000553405 KIF27Q86VH2 1401 aa25.15■■□□□ 1.62
MTHFD1-204ENST00000553405 RUSC2Q8N2Y8 1516 aa25.14■■□□□ 1.62
MTHFD1-204ENST00000553405 ERICH3Q5RHP9 1530 aa25.13■■□□□ 1.61
MTHFD1-204ENST00000553405 SNAPC4Q5SXM2 1469 aa25.12■■□□□ 1.61
MTHFD1-204ENST00000553405 MAGI1Q96QZ7 1491 aaPredicted RBP25.1■■□□□ 1.61
MTHFD1-204ENST00000553405 IGF1RP08069 1367 aa25.08■■□□□ 1.61
MTHFD1-204ENST00000553405 ADAMTS12P58397 1594 aa25.05■■□□□ 1.6
MTHFD1-204ENST00000553405 SYNJ2O15056 1496 aa25■■□□□ 1.59
MTHFD1-204ENST00000553405 CHD1O14646 1710 aa24.98■■□□□ 1.59
MTHFD1-204ENST00000553405 FHAD1B1AJZ9 1412 aa24.97■■□□□ 1.59
MTHFD1-204ENST00000553405 CUL7Q14999 1698 aa24.95■■□□□ 1.58
MTHFD1-204ENST00000553405 EEA1Q15075 1411 aa24.93■■□□□ 1.58
MTHFD1-204ENST00000553405 GRIN2AQ12879 1464 aa24.89■■□□□ 1.58
MTHFD1-204ENST00000553405 CARMIL1Q5VZK9 1371 aa24.88■■□□□ 1.57
MTHFD1-204ENST00000553405 PRXQ9BXM0 1461 aa24.87■■□□□ 1.57
MTHFD1-204ENST00000553405 CHMP7Q8WUX9 453 aaPredicted RBP24.84■■□□□ 1.57
MTHFD1-204ENST00000553405 CSRNP3Q8WYN3 585 aa24.82■■□□□ 1.56
MTHFD1-204ENST00000553405 NUP160Q12769 1436 aa24.81■■□□□ 1.56
MTHFD1-204ENST00000553405 FBLN2P98095 1184 aa24.81■■□□□ 1.56
MTHFD1-204ENST00000553405 CEP170Q5SW79 1584 aa24.8■■□□□ 1.56
MTHFD1-204ENST00000553405 RAPGEF2Q9Y4G8 1499 aa24.78■■□□□ 1.56
MTHFD1-204ENST00000553405 OSCARQ8IYS5 282 aa24.78■■□□□ 1.56
MTHFD1-204ENST00000553405 CLASP1Q7Z460 1538 aa24.77■■□□□ 1.56
MTHFD1-204ENST00000553405 FAM9AQ8IZU1 332 aaPredicted RBP24.75■■□□□ 1.55
MTHFD1-204ENST00000553405 KIF21BO75037 1637 aa24.7■■□□□ 1.54
MTHFD1-204ENST00000553405 DNAJC5Q9H3Z4 198 aa24.63■■□□□ 1.53
MTHFD1-204ENST00000553405 KIAA0586Q9BVV6 1533 aa24.61■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 173.1 ms