RNA–Protein interactions for RNA: ENST00000552872.5

MMP19-209, Transcript of matrix metallopeptidase 19, humanhuman

TSL 1 (best)

Gene MMP19, Length 2,350 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP19-209ENST00000552872 NISCHQ9Y2I1 1504 aa23.36■■□□□ 1.33
MMP19-209ENST00000552872 CCDC180Q9P1Z9 1646 aa20.4■□□□□ 0.86
MMP19-209ENST00000552872 ABCC9O60706 1549 aa19.87■□□□□ 0.77
MMP19-209ENST00000552872 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
MMP19-209ENST00000552872 ZCCHC6Q5VYS8 1495 aaKnown RBP19.54■□□□□ 0.72
MMP19-209ENST00000552872 SHROOM4Q9ULL8 1493 aa19.17■□□□□ 0.66
MMP19-209ENST00000552872 DCAF1Q9Y4B6 1507 aa19.13■□□□□ 0.65
MMP19-209ENST00000552872 NACADO15069 1562 aa19.09■□□□□ 0.65
MMP19-209ENST00000552872 RB1CC1Q8TDY2 1594 aa19.05■□□□□ 0.64
MMP19-209ENST00000552872 SCRIBQ14160 1630 aa18.98■□□□□ 0.63
MMP19-209ENST00000552872 MYO15BQ96JP2 1530 aa18.97■□□□□ 0.63
MMP19-209ENST00000552872 UNC13AQ9UPW8 1703 aa18.81■□□□□ 0.6
MMP19-209ENST00000552872 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.59
MMP19-209ENST00000552872 BICRAQ9NZM4 1560 aa18.57■□□□□ 0.56
MMP19-209ENST00000552872 CECR2Q9BXF3 1484 aa18.32■□□□□ 0.52
MMP19-209ENST00000552872 SUPT5HO00267 1087 aaKnown RBP18.25■□□□□ 0.51
MMP19-209ENST00000552872 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
MMP19-209ENST00000552872 RSF1Q96T23 1441 aaPredicted RBP18.05■□□□□ 0.48
MMP19-209ENST00000552872 SMARCA4P51532 1647 aa18.05■□□□□ 0.48
MMP19-209ENST00000552872 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
MMP19-209ENST00000552872 BAZ1AQ9NRL2 1556 aaPredicted RBP18.02■□□□□ 0.48
MMP19-209ENST00000552872 WIZO95785 1651 aa18.01■□□□□ 0.47
MMP19-209ENST00000552872 DNAJC5BQ9UF47 199 aa17.89■□□□□ 0.45
MMP19-209ENST00000552872 CC2D2AQ9P2K1 1620 aa17.89■□□□□ 0.45
MMP19-209ENST00000552872 ATAD2BQ9ULI0 1458 aa17.82■□□□□ 0.44
MMP19-209ENST00000552872 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
MMP19-209ENST00000552872 BAZ1BQ9UIG0 1483 aaKnown RBP17.73■□□□□ 0.43
MMP19-209ENST00000552872 PEG3Q9GZU2 1588 aa17.71■□□□□ 0.43
MMP19-209ENST00000552872 TOP2AP11388 1531 aaKnown RBP17.66■□□□□ 0.42
MMP19-209ENST00000552872 NCAPD3P42695 1498 aa17.64■□□□□ 0.41
MMP19-209ENST00000552872 HMGXB3Q12766 1538 aa17.57■□□□□ 0.4
MMP19-209ENST00000552872 CCDC88BA6NC98 1476 aa17.56■□□□□ 0.4
MMP19-209ENST00000552872 NESP48681 1621 aa17.37■□□□□ 0.37
MMP19-209ENST00000552872 CADPSQ9ULU8 1353 aa17.23■□□□□ 0.35
MMP19-209ENST00000552872 ABCC8Q09428 1581 aa17.21■□□□□ 0.34
MMP19-209ENST00000552872 CFTRP13569 1480 aa17.2■□□□□ 0.34
MMP19-209ENST00000552872 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
MMP19-209ENST00000552872 LAMC3Q9Y6N6 1575 aa17.1■□□□□ 0.33
MMP19-209ENST00000552872 KIF21AQ7Z4S6 1674 aa17.09■□□□□ 0.33
MMP19-209ENST00000552872 FANCD2Q9BXW9 1451 aa17.09■□□□□ 0.33
MMP19-209ENST00000552872 PRDM2Q13029 1718 aa17.08■□□□□ 0.32
MMP19-209ENST00000552872 TRIM41Q8WV44 630 aa17.04■□□□□ 0.32
MMP19-209ENST00000552872 ERCC6Q03468 1493 aa17.01■□□□□ 0.31
MMP19-209ENST00000552872 PDS5BQ9NTI5 1447 aa17■□□□□ 0.31
MMP19-209ENST00000552872 SYNJ1O43426 1573 aa17■□□□□ 0.31
MMP19-209ENST00000552872 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.31
MMP19-209ENST00000552872 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
MMP19-209ENST00000552872 CUX1P39880 1505 aa16.96■□□□□ 0.31
MMP19-209ENST00000552872 FAM9AQ8IZU1 332 aaPredicted RBP16.93■□□□□ 0.3
MMP19-209ENST00000552872 URB2Q14146 1524 aaKnown RBP16.92■□□□□ 0.3
MMP19-209ENST00000552872 EHMT2Q96KQ7 1210 aa16.87■□□□□ 0.29
MMP19-209ENST00000552872 TOPBP1Q92547 1522 aa16.86■□□□□ 0.29
MMP19-209ENST00000552872 PELP1Q8IZL8 1130 aaKnown RBP16.85■□□□□ 0.29
MMP19-209ENST00000552872 TOP2BQ02880 1626 aa16.85■□□□□ 0.29
MMP19-209ENST00000552872 MRC2Q9UBG0 1479 aa16.83■□□□□ 0.28
MMP19-209ENST00000552872 FGD5Q6ZNL6 1462 aa16.82■□□□□ 0.28
MMP19-209ENST00000552872 BIVM-ERCC5R4GMW8 1640 aa16.81■□□□□ 0.28
MMP19-209ENST00000552872 DNMBPQ6XZF7 1577 aa16.81■□□□□ 0.28
MMP19-209ENST00000552872 THOC2Q8NI27 1593 aaKnown RBP16.81■□□□□ 0.28
MMP19-209ENST00000552872 RAD54L2Q9Y4B4 1467 aa16.8■□□□□ 0.28
MMP19-209ENST00000552872 RUSC2Q8N2Y8 1516 aa16.79■□□□□ 0.28
MMP19-209ENST00000552872 SOGA1O94964 1423 aa16.79■□□□□ 0.28
MMP19-209ENST00000552872 POLA1P09884 1462 aaPredicted RBP16.77■□□□□ 0.28
MMP19-209ENST00000552872 WDR62O43379 1518 aa16.74■□□□□ 0.27
MMP19-209ENST00000552872 CUX2O14529 1486 aa16.69■□□□□ 0.26
MMP19-209ENST00000552872 TDRD9Q8NDG6 1382 aaKnown RBP16.68■□□□□ 0.26
MMP19-209ENST00000552872 LOC105371045A0A1W2PR82 267 aa16.65■□□□□ 0.26
MMP19-209ENST00000552872 ZNF608Q9ULD9 1512 aaPredicted RBP16.64■□□□□ 0.25
MMP19-209ENST00000552872 TARBP1Q13395 1621 aaKnown RBP16.62■□□□□ 0.25
MMP19-209ENST00000552872 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.25
MMP19-209ENST00000552872 MYT1Q01538 1121 aa16.61■□□□□ 0.25
MMP19-209ENST00000552872 WDR97A6NE52 1622 aa16.57■□□□□ 0.24
MMP19-209ENST00000552872 ABCA10Q8WWZ4 1543 aa16.57■□□□□ 0.24
MMP19-209ENST00000552872 KIF27Q86VH2 1401 aa16.55■□□□□ 0.24
MMP19-209ENST00000552872 IFT140Q96RY7 1462 aa16.54■□□□□ 0.24
MMP19-209ENST00000552872 CSRNP3Q8WYN3 585 aa16.54■□□□□ 0.24
MMP19-209ENST00000552872 GAPVD1Q14C86 1478 aa16.51■□□□□ 0.23
MMP19-209ENST00000552872 EIF4G3O43432 1585 aaKnown RBP16.51■□□□□ 0.23
MMP19-209ENST00000552872 ABCA5Q8WWZ7 1642 aa16.49■□□□□ 0.23
MMP19-209ENST00000552872 IGF1RP08069 1367 aa16.48■□□□□ 0.23
MMP19-209ENST00000552872 RANGAP1P46060 587 aaPredicted RBP16.48■□□□□ 0.23
MMP19-209ENST00000552872 PBRM1Q86U86 1689 aa16.46■□□□□ 0.22
MMP19-209ENST00000552872 FBLN2P98095 1184 aa16.44■□□□□ 0.22
MMP19-209ENST00000552872 HRCP23327 699 aa16.43■□□□□ 0.22
MMP19-209ENST00000552872 RAPGEF2Q9Y4G8 1499 aa16.43■□□□□ 0.22
MMP19-209ENST00000552872 UBTFP17480 764 aaKnown RBP16.41■□□□□ 0.22
MMP19-209ENST00000552872 EEA1Q15075 1411 aa16.41■□□□□ 0.22
MMP19-209ENST00000552872 SNAPC4Q5SXM2 1469 aa16.4■□□□□ 0.22
MMP19-209ENST00000552872 CARMIL1Q5VZK9 1371 aa16.4■□□□□ 0.22
MMP19-209ENST00000552872 GRIN2BQ13224 1484 aa16.38■□□□□ 0.21
MMP19-209ENST00000552872 PRXQ9BXM0 1461 aa16.35■□□□□ 0.21
MMP19-209ENST00000552872 ERICH3Q5RHP9 1530 aa16.34■□□□□ 0.21
MMP19-209ENST00000552872 ADAMTS12P58397 1594 aa16.31■□□□□ 0.2
MMP19-209ENST00000552872 KIF21BO75037 1637 aa16.31■□□□□ 0.2
MMP19-209ENST00000552872 CHMP7Q8WUX9 453 aaPredicted RBP16.31■□□□□ 0.2
MMP19-209ENST00000552872 GOLGA3Q08378 1498 aa16.3■□□□□ 0.2
MMP19-209ENST00000552872 CUL7Q14999 1698 aa16.29■□□□□ 0.2
MMP19-209ENST00000552872 FHAD1B1AJZ9 1412 aa16.26■□□□□ 0.19
MMP19-209ENST00000552872 CHD1O14646 1710 aa16.25■□□□□ 0.19
MMP19-209ENST00000552872 MAGI1Q96QZ7 1491 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms