RNA–Protein interactions for RNA: ENST00000552188.1

CCDC65-204, Transcript of coiled-coil domain containing 65, humanhuman

TSL 3

Gene CCDC65, Length 582 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65-204ENST00000552188 AEBP2Q6ZN18 517 aaPredicted RBP15.64■□□□□ 0.09
CCDC65-204ENST00000552188 CHIC1Q5VXU3 224 aa15.3■□□□□ 0.04
CCDC65-204ENST00000552188 NISCHQ9Y2I1 1504 aa14.23□□□□□ -0.13
CCDC65-204ENST00000552188 PHF23Q9BUL5 403 aaPredicted RBP13.5□□□□□ -0.25
CCDC65-204ENST00000552188 SENP3Q9H4L4 574 aaPredicted RBP13.2□□□□□ -0.3
CCDC65-204ENST00000552188 CCDC180Q9P1Z9 1646 aa12.74□□□□□ -0.37
CCDC65-204ENST00000552188 ABCC9O60706 1549 aa12.48□□□□□ -0.41
CCDC65-204ENST00000552188 PLPPR3Q6T4P5 718 aa12.45□□□□□ -0.42
CCDC65-204ENST00000552188 FOXD1Q16676 465 aa12.29□□□□□ -0.44
CCDC65-204ENST00000552188 DCAF8L2P0C7V8 631 aa12.03□□□□□ -0.48
CCDC65-204ENST00000552188 RB1CC1Q8TDY2 1594 aa12.01□□□□□ -0.49
CCDC65-204ENST00000552188 NACADO15069 1562 aa11.96□□□□□ -0.5
CCDC65-204ENST00000552188 ADRA2BP18089 450 aa11.92□□□□□ -0.5
CCDC65-204ENST00000552188 PPP6R1Q9UPN7 881 aa11.91□□□□□ -0.5
CCDC65-204ENST00000552188 ZCCHC6Q5VYS8 1495 aaKnown RBP11.83□□□□□ -0.52
CCDC65-204ENST00000552188 MYO15BQ96JP2 1530 aa11.8□□□□□ -0.52
CCDC65-204ENST00000552188 UNC13AQ9UPW8 1703 aa11.79□□□□□ -0.52
CCDC65-204ENST00000552188 DCAF1Q9Y4B6 1507 aa11.75□□□□□ -0.53
CCDC65-204ENST00000552188 PABPN1Q86U42 306 aaKnown RBP eCLIP11.64□□□□□ -0.55
CCDC65-204ENST00000552188 PIAS4Q8N2W9 510 aaPredicted RBP11.63□□□□□ -0.55
CCDC65-204ENST00000552188 SCRIBQ14160 1630 aa11.62□□□□□ -0.55
CCDC65-204ENST00000552188 BICRAQ9NZM4 1560 aa11.58□□□□□ -0.56
CCDC65-204ENST00000552188 SHROOM4Q9ULL8 1493 aa11.45□□□□□ -0.58
CCDC65-204ENST00000552188 DNAJC5BQ9UF47 199 aa11.41□□□□□ -0.58
CCDC65-204ENST00000552188 EIF4G1Q04637 1599 aaKnown RBP11.31□□□□□ -0.6
CCDC65-204ENST00000552188 CC2D2AQ9P2K1 1620 aa11.3□□□□□ -0.6
CCDC65-204ENST00000552188 MSH5O43196 834 aa11.25□□□□□ -0.61
CCDC65-204ENST00000552188 CECR2Q9BXF3 1484 aa11.21□□□□□ -0.61
CCDC65-204ENST00000552188 SMARCA4P51532 1647 aa11.09□□□□□ -0.63
CCDC65-204ENST00000552188 BAZ1AQ9NRL2 1556 aaPredicted RBP11.07□□□□□ -0.64
CCDC65-204ENST00000552188 SMARCA2P51531 1590 aa11.03□□□□□ -0.64
CCDC65-204ENST00000552188 PPP4R3CPQ6ZMV5 832 aa11.02□□□□□ -0.65
CCDC65-204ENST00000552188 ATAD2BQ9ULI0 1458 aa10.99□□□□□ -0.65
CCDC65-204ENST00000552188 NCAPD3P42695 1498 aa10.98□□□□□ -0.65
CCDC65-204ENST00000552188 MROH2BQ7Z745 1585 aa10.96□□□□□ -0.65
CCDC65-204ENST00000552188 HMGXB3Q12766 1538 aa10.95□□□□□ -0.66
CCDC65-204ENST00000552188 BAZ1BQ9UIG0 1483 aaKnown RBP10.94□□□□□ -0.66
CCDC65-204ENST00000552188 PEG3Q9GZU2 1588 aa10.93□□□□□ -0.66
CCDC65-204ENST00000552188 WIZO95785 1651 aa10.9□□□□□ -0.66
CCDC65-204ENST00000552188 KCNA4P22459 653 aa10.87□□□□□ -0.67
CCDC65-204ENST00000552188 SCAF1Q9H7N4 1312 aaKnown RBP10.83□□□□□ -0.68
CCDC65-204ENST00000552188 MAPK8IP2Q13387 824 aaPredicted RBP10.81□□□□□ -0.68
CCDC65-204ENST00000552188 ERCC6Q03468 1493 aa10.81□□□□□ -0.68
CCDC65-204ENST00000552188 RSF1Q96T23 1441 aaPredicted RBP10.8□□□□□ -0.68
CCDC65-204ENST00000552188 LAMC3Q9Y6N6 1575 aa10.77□□□□□ -0.69
CCDC65-204ENST00000552188 NESP48681 1621 aa10.76□□□□□ -0.69
CCDC65-204ENST00000552188 TOP2AP11388 1531 aaKnown RBP10.74□□□□□ -0.69
CCDC65-204ENST00000552188 KIF21AQ7Z4S6 1674 aa10.72□□□□□ -0.69
CCDC65-204ENST00000552188 NCBP3Q53F19 620 aaKnown RBP10.71□□□□□ -0.69
CCDC65-204ENST00000552188 PDS5BQ9NTI5 1447 aa10.68□□□□□ -0.7
CCDC65-204ENST00000552188 CADPSQ9ULU8 1353 aa10.67□□□□□ -0.7
CCDC65-204ENST00000552188 PRDM2Q13029 1718 aa10.67□□□□□ -0.7
CCDC65-204ENST00000552188 CNKSR2Q8WXI2 1034 aa10.65□□□□□ -0.7
CCDC65-204ENST00000552188 CUX2O14529 1486 aa10.65□□□□□ -0.7
CCDC65-204ENST00000552188 THOC2Q8NI27 1593 aaKnown RBP10.62□□□□□ -0.71
CCDC65-204ENST00000552188 CCDC88BA6NC98 1476 aa10.61□□□□□ -0.71
CCDC65-204ENST00000552188 CEP164Q9UPV0 1460 aa10.6□□□□□ -0.71
CCDC65-204ENST00000552188 SUPT5HO00267 1087 aaKnown RBP10.59□□□□□ -0.71
CCDC65-204ENST00000552188 NPM3O75607 178 aaKnown RBP10.59□□□□□ -0.71
CCDC65-204ENST00000552188 CFTRP13569 1480 aa10.59□□□□□ -0.71
CCDC65-204ENST00000552188 FANCD2Q9BXW9 1451 aa10.57□□□□□ -0.72
CCDC65-204ENST00000552188 MRC2Q9UBG0 1479 aa10.57□□□□□ -0.72
CCDC65-204ENST00000552188 DMRT2Q9Y5R5 561 aa10.55□□□□□ -0.72
CCDC65-204ENST00000552188 WDR62O43379 1518 aa10.52□□□□□ -0.73
CCDC65-204ENST00000552188 URB2Q14146 1524 aaKnown RBP10.44□□□□□ -0.74
CCDC65-204ENST00000552188 ABCC8Q09428 1581 aa10.43□□□□□ -0.74
CCDC65-204ENST00000552188 RNF216Q9NWF9 866 aaPredicted RBP10.42□□□□□ -0.74
CCDC65-204ENST00000552188 DNMBPQ6XZF7 1577 aa10.4□□□□□ -0.74
CCDC65-204ENST00000552188 TOPBP1Q92547 1522 aa10.39□□□□□ -0.75
CCDC65-204ENST00000552188 SLC4A1APQ9BWU0 796 aaKnown RBP10.36□□□□□ -0.75
CCDC65-204ENST00000552188 DNAJC5Q9H3Z4 198 aa10.36□□□□□ -0.75
CCDC65-204ENST00000552188 HOXD11P31277 338 aaPredicted RBP10.35□□□□□ -0.75
CCDC65-204ENST00000552188 IFT140Q96RY7 1462 aa10.35□□□□□ -0.75
CCDC65-204ENST00000552188 EIF4G3O43432 1585 aaKnown RBP10.3□□□□□ -0.76
CCDC65-204ENST00000552188 POLA1P09884 1462 aaPredicted RBP10.3□□□□□ -0.76
CCDC65-204ENST00000552188 TARBP1Q13395 1621 aaKnown RBP10.29□□□□□ -0.76
CCDC65-204ENST00000552188 CUX1P39880 1505 aa10.29□□□□□ -0.76
CCDC65-204ENST00000552188 FGD5Q6ZNL6 1462 aa10.29□□□□□ -0.76
CCDC65-204ENST00000552188 SOGA1O94964 1423 aa10.28□□□□□ -0.76
CCDC65-204ENST00000552188 ZNF608Q9ULD9 1512 aaPredicted RBP10.28□□□□□ -0.76
CCDC65-204ENST00000552188 RAD54L2Q9Y4B4 1467 aa10.26□□□□□ -0.77
CCDC65-204ENST00000552188 BIVM-ERCC5R4GMW8 1640 aa10.24□□□□□ -0.77
CCDC65-204ENST00000552188 CHD1O14646 1710 aa10.24□□□□□ -0.77
CCDC65-204ENST00000552188 AQRO60306 1485 aaKnown RBP eCLIP10.23□□□□□ -0.77
CCDC65-204ENST00000552188 WDR97A6NE52 1622 aa10.23□□□□□ -0.77
CCDC65-204ENST00000552188 OSCARQ8IYS5 282 aa10.23□□□□□ -0.77
CCDC65-204ENST00000552188 EHMT2Q96KQ7 1210 aa10.23□□□□□ -0.77
CCDC65-204ENST00000552188 WRNQ14191 1432 aaPredicted RBP eCLIP10.23□□□□□ -0.77
CCDC65-204ENST00000552188 TOP2BQ02880 1626 aa10.22□□□□□ -0.77
CCDC65-204ENST00000552188 PBRM1Q86U86 1689 aa10.22□□□□□ -0.77
CCDC65-204ENST00000552188 DCAF8L1A6NGE4 600 aa10.21□□□□□ -0.77
CCDC65-204ENST00000552188 FBLN2P98095 1184 aa10.21□□□□□ -0.77
CCDC65-204ENST00000552188 TDRD9Q8NDG6 1382 aaKnown RBP10.21□□□□□ -0.78
CCDC65-204ENST00000552188 SYNJ1O43426 1573 aa10.2□□□□□ -0.78
CCDC65-204ENST00000552188 POTEDQ86YR6 584 aa10.17□□□□□ -0.78
CCDC65-204ENST00000552188 GRIN2BQ13224 1484 aa10.17□□□□□ -0.78
CCDC65-204ENST00000552188 ABCA10Q8WWZ4 1543 aa10.16□□□□□ -0.78
CCDC65-204ENST00000552188 GAPVD1Q14C86 1478 aa10.16□□□□□ -0.78
CCDC65-204ENST00000552188 SNAPC4Q5SXM2 1469 aa10.15□□□□□ -0.78
CCDC65-204ENST00000552188 ABCA5Q8WWZ7 1642 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 99.1 ms