RNA–Protein interactions for RNA: ENST00000551630.1

PTCH1-224, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 539 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-224ENST00000551630 NISCHQ9Y2I1 1504 aa36.65■■■■□ 3.46
PTCH1-224ENST00000551630 CCDC180Q9P1Z9 1646 aa32.42■■■□□ 2.78
PTCH1-224ENST00000551630 ABCC9O60706 1549 aa31.49■■■□□ 2.63
PTCH1-224ENST00000551630 ZCCHC6Q5VYS8 1495 aaKnown RBP30.62■■■□□ 2.49
PTCH1-224ENST00000551630 DCAF8L2P0C7V8 631 aa30.51■■■□□ 2.47
PTCH1-224ENST00000551630 NACADO15069 1562 aa30.4■■■□□ 2.46
PTCH1-224ENST00000551630 RB1CC1Q8TDY2 1594 aa30.37■■■□□ 2.45
PTCH1-224ENST00000551630 DCAF1Q9Y4B6 1507 aa30.29■■■□□ 2.44
PTCH1-224ENST00000551630 MYO15BQ96JP2 1530 aa30.28■■■□□ 2.44
PTCH1-224ENST00000551630 UNC13AQ9UPW8 1703 aa29.71■■■□□ 2.35
PTCH1-224ENST00000551630 SCRIBQ14160 1630 aa29.7■■■□□ 2.34
PTCH1-224ENST00000551630 PABPN1Q86U42 306 aaKnown RBP eCLIP29.48■■■□□ 2.31
PTCH1-224ENST00000551630 BICRAQ9NZM4 1560 aa29.47■■■□□ 2.31
PTCH1-224ENST00000551630 SHROOM4Q9ULL8 1493 aa29.23■■■□□ 2.27
PTCH1-224ENST00000551630 EIF4G1Q04637 1599 aaKnown RBP28.67■■■□□ 2.18
PTCH1-224ENST00000551630 DNAJC5BQ9UF47 199 aa28.59■■■□□ 2.17
PTCH1-224ENST00000551630 CECR2Q9BXF3 1484 aa28.56■■■□□ 2.16
PTCH1-224ENST00000551630 CC2D2AQ9P2K1 1620 aa28.47■■■□□ 2.15
PTCH1-224ENST00000551630 SMARCA4P51532 1647 aa28.39■■■□□ 2.13
PTCH1-224ENST00000551630 BAZ1AQ9NRL2 1556 aaPredicted RBP28.37■■■□□ 2.13
PTCH1-224ENST00000551630 MROH2BQ7Z745 1585 aa28.29■■■□□ 2.12
PTCH1-224ENST00000551630 ATAD2BQ9ULI0 1458 aa28.15■■■□□ 2.1
PTCH1-224ENST00000551630 SMARCA2P51531 1590 aa28.11■■■□□ 2.09
PTCH1-224ENST00000551630 PEG3Q9GZU2 1588 aa28.07■■■□□ 2.08
PTCH1-224ENST00000551630 RSF1Q96T23 1441 aaPredicted RBP28.05■■■□□ 2.08
PTCH1-224ENST00000551630 NCAPD3P42695 1498 aa28.04■■■□□ 2.08
PTCH1-224ENST00000551630 WIZO95785 1651 aa28■■■□□ 2.07
PTCH1-224ENST00000551630 HMGXB3Q12766 1538 aa27.96■■■□□ 2.07
PTCH1-224ENST00000551630 BAZ1BQ9UIG0 1483 aaKnown RBP27.94■■■□□ 2.06
PTCH1-224ENST00000551630 TOP2AP11388 1531 aaKnown RBP27.71■■■□□ 2.03
PTCH1-224ENST00000551630 SUPT5HO00267 1087 aaKnown RBP27.62■■■□□ 2.01
PTCH1-224ENST00000551630 CCDC88BA6NC98 1476 aa27.38■■□□□ 1.97
PTCH1-224ENST00000551630 NESP48681 1621 aa27.35■■□□□ 1.97
PTCH1-224ENST00000551630 LAMC3Q9Y6N6 1575 aa27.26■■□□□ 1.95
PTCH1-224ENST00000551630 CADPSQ9ULU8 1353 aa27.25■■□□□ 1.95
PTCH1-224ENST00000551630 CFTRP13569 1480 aa27.17■■□□□ 1.94
PTCH1-224ENST00000551630 ERCC6Q03468 1493 aa27.1■■□□□ 1.93
PTCH1-224ENST00000551630 PDS5BQ9NTI5 1447 aa27.06■■□□□ 1.92
PTCH1-224ENST00000551630 KIF21AQ7Z4S6 1674 aa27.02■■□□□ 1.92
PTCH1-224ENST00000551630 PRDM2Q13029 1718 aa26.99■■□□□ 1.91
PTCH1-224ENST00000551630 FANCD2Q9BXW9 1451 aa26.98■■□□□ 1.91
PTCH1-224ENST00000551630 CEP164Q9UPV0 1460 aa26.91■■□□□ 1.9
PTCH1-224ENST00000551630 THOC2Q8NI27 1593 aaKnown RBP26.86■■□□□ 1.89
PTCH1-224ENST00000551630 MRC2Q9UBG0 1479 aa26.81■■□□□ 1.88
PTCH1-224ENST00000551630 WDR62O43379 1518 aa26.7■■□□□ 1.87
PTCH1-224ENST00000551630 URB2Q14146 1524 aaKnown RBP26.7■■□□□ 1.87
PTCH1-224ENST00000551630 CUX2O14529 1486 aa26.66■■□□□ 1.86
PTCH1-224ENST00000551630 TOPBP1Q92547 1522 aa26.59■■□□□ 1.85
PTCH1-224ENST00000551630 DNMBPQ6XZF7 1577 aa26.58■■□□□ 1.85
PTCH1-224ENST00000551630 CUX1P39880 1505 aa26.52■■□□□ 1.84
PTCH1-224ENST00000551630 ABCC8Q09428 1581 aa26.52■■□□□ 1.84
PTCH1-224ENST00000551630 WRNQ14191 1432 aaPredicted RBP eCLIP26.45■■□□□ 1.82
PTCH1-224ENST00000551630 SYNJ1O43426 1573 aa26.4■■□□□ 1.82
PTCH1-224ENST00000551630 POLA1P09884 1462 aaPredicted RBP26.38■■□□□ 1.81
PTCH1-224ENST00000551630 FGD5Q6ZNL6 1462 aa26.37■■□□□ 1.81
PTCH1-224ENST00000551630 TOP2BQ02880 1626 aa26.35■■□□□ 1.81
PTCH1-224ENST00000551630 BIVM-ERCC5R4GMW8 1640 aa26.35■■□□□ 1.81
PTCH1-224ENST00000551630 IFT140Q96RY7 1462 aa26.31■■□□□ 1.8
PTCH1-224ENST00000551630 RAD54L2Q9Y4B4 1467 aa26.29■■□□□ 1.8
PTCH1-224ENST00000551630 TARBP1Q13395 1621 aaKnown RBP26.26■■□□□ 1.79
PTCH1-224ENST00000551630 SOGA1O94964 1423 aa26.26■■□□□ 1.79
PTCH1-224ENST00000551630 ZNF608Q9ULD9 1512 aaPredicted RBP26.22■■□□□ 1.79
PTCH1-224ENST00000551630 WDR97A6NE52 1622 aa26.14■■□□□ 1.78
PTCH1-224ENST00000551630 EIF4G3O43432 1585 aaKnown RBP26.12■■□□□ 1.77
PTCH1-224ENST00000551630 ABCA10Q8WWZ4 1543 aa26.11■■□□□ 1.77
PTCH1-224ENST00000551630 AQRO60306 1485 aaKnown RBP eCLIP26.1■■□□□ 1.77
PTCH1-224ENST00000551630 TDRD9Q8NDG6 1382 aaKnown RBP26.09■■□□□ 1.77
PTCH1-224ENST00000551630 TRIM41Q8WV44 630 aa26.02■■□□□ 1.76
PTCH1-224ENST00000551630 ABCA5Q8WWZ7 1642 aa26■■□□□ 1.75
PTCH1-224ENST00000551630 GAPVD1Q14C86 1478 aa25.97■■□□□ 1.75
PTCH1-224ENST00000551630 CHIC1Q5VXU3 224 aa25.93■■□□□ 1.74
PTCH1-224ENST00000551630 PBRM1Q86U86 1689 aa25.92■■□□□ 1.74
PTCH1-224ENST00000551630 GRIN2BQ13224 1484 aa25.91■■□□□ 1.74
PTCH1-224ENST00000551630 SNAPC4Q5SXM2 1469 aa25.88■■□□□ 1.73
PTCH1-224ENST00000551630 KIF27Q86VH2 1401 aa25.85■■□□□ 1.73
PTCH1-224ENST00000551630 MAGI1Q96QZ7 1491 aaPredicted RBP25.8■■□□□ 1.72
PTCH1-224ENST00000551630 ERICH3Q5RHP9 1530 aa25.78■■□□□ 1.72
PTCH1-224ENST00000551630 RUSC2Q8N2Y8 1516 aa25.78■■□□□ 1.72
PTCH1-224ENST00000551630 ADAMTS12P58397 1594 aa25.74■■□□□ 1.71
PTCH1-224ENST00000551630 CHD1O14646 1710 aa25.73■■□□□ 1.71
PTCH1-224ENST00000551630 FBLN2P98095 1184 aa25.71■■□□□ 1.71
PTCH1-224ENST00000551630 SYNJ2O15056 1496 aa25.71■■□□□ 1.71
PTCH1-224ENST00000551630 IGF1RP08069 1367 aa25.7■■□□□ 1.71
PTCH1-224ENST00000551630 FHAD1B1AJZ9 1412 aa25.67■■□□□ 1.7
PTCH1-224ENST00000551630 CHMP7Q8WUX9 453 aaPredicted RBP25.66■■□□□ 1.7
PTCH1-224ENST00000551630 CUL7Q14999 1698 aa25.63■■□□□ 1.69
PTCH1-224ENST00000551630 GRIN2AQ12879 1464 aa25.6■■□□□ 1.69
PTCH1-224ENST00000551630 OSCARQ8IYS5 282 aa25.58■■□□□ 1.69
PTCH1-224ENST00000551630 CARMIL1Q5VZK9 1371 aa25.56■■□□□ 1.68
PTCH1-224ENST00000551630 FAM9AQ8IZU1 332 aaPredicted RBP25.55■■□□□ 1.68
PTCH1-224ENST00000551630 EEA1Q15075 1411 aa25.54■■□□□ 1.68
PTCH1-224ENST00000551630 CEP170Q5SW79 1584 aa25.48■■□□□ 1.67
PTCH1-224ENST00000551630 CSRNP3Q8WYN3 585 aa25.47■■□□□ 1.67
PTCH1-224ENST00000551630 NUP160Q12769 1436 aa25.46■■□□□ 1.67
PTCH1-224ENST00000551630 PRXQ9BXM0 1461 aa25.45■■□□□ 1.66
PTCH1-224ENST00000551630 RAPGEF2Q9Y4G8 1499 aa25.45■■□□□ 1.66
PTCH1-224ENST00000551630 CLASP1Q7Z460 1538 aa25.44■■□□□ 1.66
PTCH1-224ENST00000551630 DNAJC5Q9H3Z4 198 aa25.44■■□□□ 1.66
PTCH1-224ENST00000551630 KIF21BO75037 1637 aa25.3■■□□□ 1.64
PTCH1-224ENST00000551630 KIAA0586Q9BVV6 1533 aa25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 163.7 ms